Initializing AMReX (24.04-15-g7813bb7d6bc6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-15-g7813bb7d6bc6) initialized Starting run at 05:21:29 UTC on 2024-04-15. Successfully read inputs file ... Castro git describe: 24.04-14-g3d76cd5a0 AMReX git describe: 24.04-15-g7813bb7d6 Microphysics git describe: 24.04-7-gd4312a6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015496333 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35535275 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350532507 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327737446 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342945485 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367982603 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312556184 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.32412807 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310554119 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312052611 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310909291 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007392135 seconds Ending run at 05:21:33 UTC on 2024-04-15. Run time = 3.534714789 Run time without initialization = 3.326542125 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.535 ... 3.535 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3051 2.3345 2.3944 67.74% Gravity::make_radial_gravity() 21 0.3022 0.3202 0.3284 9.29% Castro::initData() 1 0.05616 0.09716 0.1411 3.99% check_for_negative_density() 10 0.03011 0.09575 0.124 3.51% Castro::estTimeStep() 21 0.02618 0.0773 0.1221 3.45% amrex::Copy() 193 0.06314 0.07496 0.08904 2.52% FabArray::setVal() 143 0.06313 0.06918 0.07979 2.26% FabArray::ParallelCopy_finish() 41 0.05104 0.05985 0.07822 2.21% Castro::normalize_species() 62 0.04178 0.04413 0.05725 1.62% Castro::reset_internal_energy(Fab) 1008 0.04407 0.04707 0.05035 1.42% FabArray::ParallelCopy_nowait() 41 0.03333 0.03852 0.04004 1.13% StateData::FillBoundary(geom) 41 0.0298 0.0314 0.03514 0.99% FillPatchIterator::Initialize 41 0.02684 0.0316 0.03349 0.95% Gravity::interpolate_monopole_grav() 21 0.02733 0.02911 0.03041 0.86% Castro::construct_new_gravity_source() 10 0.02187 0.02455 0.02771 0.78% Castro::computeTemp() 63 0.01866 0.01954 0.02063 0.58% Castro::initialize_do_advance() 10 0.01416 0.01682 0.01818 0.51% FabArray::setDomainBndry() 41 0.008636 0.01103 0.01362 0.39% Amr::writePlotFile() 2 0.008262 0.01106 0.01357 0.38% MultiFab::contains_nan() 20 0.009272 0.01047 0.01344 0.38% FabArray::Saxpy() 20 0.009924 0.01154 0.01267 0.36% Castro::initialize_advance() 10 0.005502 0.009899 0.01247 0.35% VisMF::Write(FabArray) 2 0.008246 0.009265 0.01227 0.35% Castro::construct_old_gravity_source() 10 0.006228 0.00857 0.009202 0.26% Castro::enforce_min_density() 62 0.007133 0.007468 0.007793 0.22% Castro::initMFs() 1 0.006654 0.007194 0.007377 0.21% Castro::construct_new_source() 50 0.005775 0.005934 0.006141 0.17% StateData::define() 4 0.005312 0.005889 0.006093 0.17% Amr::coarseTimeStep() 10 0.001677 0.004905 0.005859 0.17% Castro::swap_state_time_levels() 10 0.002623 0.003765 0.00447 0.13% Gravity::get_new_grav_vector() 11 0.002695 0.003626 0.00404 0.11% main() 1 0.003101 0.003482 0.00367 0.10% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0006721 0.003367 0.10% Gravity::get_old_grav_vector() 10 0.001596 0.001969 0.002339 0.07% Castro::buildMetrics() 1 0.001489 0.001731 0.00192 0.05% Castro::finalize_do_advance() 10 0.0003888 0.0009604 0.001294 0.04% AmrLevel::FillPatch() 41 0.0006498 0.0008283 0.0009438 0.03% Amr::InitAmr() 1 0.0003501 0.0004101 0.0005831 0.02% Amr::timeStep() 10 0.0001685 0.0002238 0.0004653 0.01% DistributionMapping::LeastUsedCPUs() 1 2.862e-05 0.0001996 0.0002477 0.01% Castro::do_advance_ctu() 10 0.0001536 0.0001781 0.0002092 0.01% Castro::clean_state() 62 0.0001536 0.0001688 0.0001967 0.01% StateDataPhysBCFunct::() 41 9.368e-05 0.0001121 0.0001673 0.00% FillPatchIterator::FillFromLevel0() 41 9.619e-05 0.0001128 0.0001309 0.00% Castro::finalize_advance() 10 9.979e-05 0.0001113 0.0001239 0.00% Castro::Castro() 1 7.552e-05 0.0001019 0.0001171 0.00% Castro::do_old_sources() 10 7.884e-05 8.866e-05 0.0001042 0.00% FabArray::ParallelCopy() 41 6.897e-05 8.525e-05 0.0001023 0.00% Amr::FinalizeInit() 1 3.805e-06 1.688e-05 0.000101 0.00% Castro::enforce_consistent_e() 1 7.612e-05 8.567e-05 9.913e-05 0.00% FillPatchSingleLevel 41 7.03e-05 7.433e-05 8.228e-05 0.00% Castro::construct_old_source() 50 5.323e-05 6.841e-05 8.017e-05 0.00% FabArrayBase::getCPC() 41 5.833e-05 6.411e-05 7.713e-05 0.00% Amr::writeSmallPlotFile() 1 3.426e-05 4.96e-05 6.331e-05 0.00% Castro::subcycle_advance_ctu() 10 4.462e-05 5.168e-05 5.864e-05 0.00% Castro::do_new_sources() 10 5.257e-05 5.52e-05 5.855e-05 0.00% Amr::defBaseLevel() 1 4.236e-05 4.594e-05 5.519e-05 0.00% Castro::advance() 10 4.217e-05 4.506e-05 4.776e-05 0.00% Castro::apply_source_to_state() 20 3.516e-05 4.287e-05 4.694e-05 0.00% Castro::construct_old_gravity() 10 3.156e-05 3.763e-05 4.469e-05 0.00% Castro::construct_new_gravity() 10 2.951e-05 3.339e-05 3.766e-05 0.00% Castro::enforce_speed_limit() 62 2.603e-05 2.882e-05 3.19e-05 0.00% Castro::expand_state() 10 2.187e-05 2.629e-05 2.966e-05 0.00% FabArrayBase::CPC::define() 2 2.19e-05 2.545e-05 2.826e-05 0.00% Castro::check_for_nan() 20 2.051e-05 2.337e-05 2.746e-05 0.00% Amr::initialInit() 1 1.461e-06 4.439e-06 2.377e-05 0.00% Castro::post_timestep() 10 1.342e-05 1.572e-05 2.016e-05 0.00% Gravity::set_mass_offset() 10 1.208e-05 1.633e-05 1.84e-05 0.00% Castro::post_init() 1 7.672e-06 1.016e-05 1.612e-05 0.00% Amr::initSubcycle() 1 1.119e-05 1.167e-05 1.195e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.771e-06 1.063e-05 1.187e-05 0.00% Gravity::swapTimeLevels() 10 7.53e-06 8.965e-06 1.17e-05 0.00% Castro::computeNewDt() 9 7.347e-06 8.894e-06 1.084e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.101e-06 5.456e-06 1.053e-05 0.00% Castro::create_source_corrector() 10 7.864e-06 8.927e-06 1.018e-05 0.00% Castro::FluxRegCrseInit 10 6.076e-06 7.709e-06 9.666e-06 0.00% Castro::post_regrid() 1 3.136e-06 4.497e-06 9.651e-06 0.00% Castro::retry_advance_ctu() 10 7.211e-06 7.971e-06 8.632e-06 0.00% Amr::InitializeInit() 1 2.988e-06 4.161e-06 8.058e-06 0.00% Castro::computeInitialDt() 2 3.434e-06 4.26e-06 5.754e-06 0.00% Amr::init() 1 1.983e-06 2.204e-06 2.762e-06 0.00% Castro::FluxRegFineAdd() 10 2.024e-06 2.218e-06 2.423e-06 0.00% DistributionMapping::Distribute() 1 1.102e-06 1.195e-06 1.456e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.535 3.535 100.00% Amr::coarseTimeStep() 10 3.316 3.316 3.316 93.80% Amr::timeStep() 10 3.299 3.3 3.303 93.45% Castro::advance() 10 3.283 3.284 3.285 92.92% Castro::subcycle_advance_ctu() 10 3.203 3.21 3.214 90.93% Castro::do_advance_ctu() 10 3.203 3.21 3.214 90.93% Castro::construct_ctu_hydro_source() 10 2.446 2.452 2.458 69.54% Gravity::make_radial_gravity() 21 0.3171 0.3355 0.3416 9.66% AmrLevel::FillPatch() 41 0.1855 0.2035 0.2175 6.15% Gravity::get_new_grav_vector() 11 0.2131 0.2158 0.2175 6.15% Castro::construct_old_gravity() 10 0.1886 0.2049 0.2111 5.97% Gravity::get_old_grav_vector() 10 0.1875 0.2042 0.21 5.94% Amr::init() 1 0.2074 0.2076 0.2077 5.87% Amr::initialInit() 1 0.1916 0.1922 0.1928 5.45% Castro::construct_new_gravity() 10 0.1875 0.1902 0.1924 5.44% Castro::initialize_do_advance() 10 0.1553 0.1675 0.1857 5.25% FillPatchIterator::Initialize 41 0.1576 0.1729 0.1796 5.08% Amr::InitializeInit() 1 0.07772 0.1188 0.1629 4.61% Amr::defBaseLevel() 1 0.07772 0.1188 0.1629 4.61% Castro::initData() 1 0.05985 0.1011 0.1452 4.11% FillPatchIterator::FillFromLevel0() 41 0.1195 0.1302 0.1423 4.03% FillPatchSingleLevel 41 0.1194 0.1301 0.1422 4.02% Castro::clean_state() 62 0.1117 0.1182 0.1376 3.89% Castro::expand_state() 10 0.1011 0.1144 0.1311 3.71% check_for_negative_density() 10 0.03011 0.09575 0.124 3.51% Castro::estTimeStep() 21 0.02618 0.0773 0.1221 3.45% Amr::FinalizeInit() 1 0.02984 0.07348 0.1149 3.25% FabArray::ParallelCopy() 41 0.08924 0.09855 0.1117 3.16% Castro::do_old_sources() 10 0.08851 0.09329 0.09606 2.72% amrex::Copy() 193 0.06314 0.07496 0.08904 2.52% Castro::computeInitialDt() 2 0.002398 0.0465 0.08755 2.48% FabArray::setVal() 143 0.06313 0.06918 0.07979 2.26% FabArray::ParallelCopy_finish() 41 0.05104 0.05985 0.07822 2.21% Castro::initialize_advance() 10 0.0658 0.07006 0.07751 2.19% Castro::computeTemp() 63 0.06301 0.06728 0.07412 2.10% Castro::do_new_sources() 10 0.06045 0.06463 0.07197 2.04% Castro::normalize_species() 62 0.04178 0.04413 0.05725 1.62% Castro::reset_internal_energy(MultiFab) 63 0.04435 0.04774 0.05372 1.52% Castro::reset_internal_energy(Fab) 1008 0.04407 0.04707 0.05035 1.42% FabArray::ParallelCopy_nowait() 41 0.03342 0.03861 0.04013 1.14% StateDataPhysBCFunct::() 41 0.0299 0.03151 0.03531 1.00% StateData::FillBoundary(geom) 41 0.0298 0.0314 0.03514 0.99% Castro::construct_new_source() 50 0.02769 0.03049 0.03381 0.96% Gravity::interpolate_monopole_grav() 21 0.02733 0.02911 0.03041 0.86% Castro::finalize_do_advance() 10 0.01401 0.02261 0.028 0.79% Castro::construct_new_gravity_source() 10 0.02187 0.02455 0.02771 0.78% Castro::post_init() 1 0.02593 0.02668 0.02716 0.77% Amr::writePlotFile() 2 0.02229 0.02284 0.02353 0.67% Castro::post_timestep() 10 0.01549 0.01615 0.01877 0.53% FabArray::setDomainBndry() 41 0.008636 0.01103 0.01362 0.39% Castro::check_for_nan() 20 0.009295 0.01049 0.01347 0.38% MultiFab::contains_nan() 20 0.009272 0.01047 0.01344 0.38% Castro::apply_source_to_state() 20 0.00996 0.01158 0.01271 0.36% FabArray::Saxpy() 20 0.009924 0.01154 0.01267 0.36% VisMF::Write(FabArray) 2 0.008246 0.009265 0.01227 0.35% Castro::Castro() 1 0.009447 0.01154 0.01211 0.34% Castro::construct_old_source() 50 0.006281 0.008638 0.009282 0.26% Castro::construct_old_gravity_source() 10 0.006228 0.00857 0.009202 0.26% Castro::computeNewDt() 9 0.009156 0.009167 0.009178 0.26% Castro::enforce_min_density() 62 0.007133 0.007468 0.007793 0.22% Castro::initMFs() 1 0.006654 0.007194 0.007377 0.21% AmrLevel::AmrLevel(dm) 1 0.005323 0.0059 0.006105 0.17% StateData::define() 4 0.005312 0.005889 0.006093 0.17% Castro::finalize_advance() 10 0.003105 0.003586 0.004786 0.14% Castro::swap_state_time_levels() 10 0.002623 0.003765 0.00447 0.13% Castro::buildMetrics() 1 0.001608 0.001875 0.002065 0.06% Castro::post_regrid() 1 0.001462 0.00155 0.001778 0.05% Amr::InitAmr() 1 0.0003613 0.0004218 0.0005948 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.403e-05 0.0002063 0.0002597 0.01% DistributionMapping::LeastUsedCPUs() 1 2.862e-05 0.0001996 0.0002477 0.01% FabArrayBase::getCPC() 41 8.455e-05 8.956e-05 0.0001001 0.00% Castro::enforce_consistent_e() 1 7.612e-05 8.567e-05 9.913e-05 0.00% Amr::writeSmallPlotFile() 1 3.426e-05 4.96e-05 6.331e-05 0.00% Castro::enforce_speed_limit() 62 2.603e-05 2.882e-05 3.19e-05 0.00% FabArrayBase::CPC::define() 2 2.19e-05 2.545e-05 2.826e-05 0.00% Gravity::set_mass_offset() 10 1.208e-05 1.633e-05 1.84e-05 0.00% Amr::initSubcycle() 1 1.119e-05 1.167e-05 1.195e-05 0.00% Gravity::swapTimeLevels() 10 7.53e-06 8.965e-06 1.17e-05 0.00% Castro::create_source_corrector() 10 7.864e-06 8.927e-06 1.018e-05 0.00% Castro::FluxRegCrseInit 10 6.076e-06 7.709e-06 9.666e-06 0.00% Castro::retry_advance_ctu() 10 7.211e-06 7.971e-06 8.632e-06 0.00% Castro::FluxRegFineAdd() 10 2.024e-06 2.218e-06 2.423e-06 0.00% DistributionMapping::Distribute() 1 1.102e-06 1.195e-06 1.456e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 42 B 66 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-15-g7813bb7d6bc6) finalized