Initializing AMReX (24.04-21-g96f6d669d1bb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-21-g96f6d669d1bb) initialized Starting run at 05:38:07 UTC on 2024-04-17. Successfully read inputs file ... Castro git describe: 24.04-15-g5cacc9476 AMReX git describe: 24.04-21-g96f6d669d Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014431945 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356439138 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342972543 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341457634 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.380083572 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365407017 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.331320141 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.326395964 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.323888506 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.327413843 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.347123195 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009564793 seconds Ending run at 05:38:11 UTC on 2024-04-17. Run time = 3.655852096 Run time without initialization = 3.459450559 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.655 ... 3.655 ... 3.656 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1981 2.4004 2.4882 68.06% check_for_negative_density() 10 0.05036 0.1392 0.3481 9.52% Gravity::make_radial_gravity() 21 0.2916 0.304 0.3333 9.12% Castro::initData() 1 0.04758 0.08966 0.1284 3.51% Castro::estTimeStep() 21 0.03013 0.07801 0.1241 3.40% FabArray::ParallelCopy_finish() 41 0.04613 0.06479 0.1226 3.35% amrex::Copy() 193 0.0553 0.08533 0.09985 2.73% FabArray::setVal() 143 0.06206 0.07204 0.07743 2.12% FabArray::ParallelCopy_nowait() 41 0.02985 0.04265 0.05131 1.40% Castro::reset_internal_energy(Fab) 1008 0.04507 0.047 0.04879 1.33% Castro::normalize_species() 62 0.04175 0.0426 0.04484 1.23% FillPatchIterator::Initialize 41 0.02363 0.03451 0.03932 1.08% StateData::FillBoundary(geom) 41 0.02661 0.03214 0.03639 1.00% Gravity::interpolate_monopole_grav() 21 0.0276 0.02887 0.02993 0.82% Castro::construct_new_gravity_source() 10 0.0225 0.02574 0.028 0.77% Castro::computeTemp() 63 0.01831 0.01966 0.02069 0.57% Castro::initialize_do_advance() 10 0.01029 0.01733 0.01942 0.53% FabArray::setDomainBndry() 41 0.006844 0.01291 0.01593 0.44% FabArray::Saxpy() 20 0.008712 0.01272 0.01459 0.40% MultiFab::contains_nan() 20 0.01013 0.01144 0.0133 0.36% Castro::initialize_advance() 10 0.009857 0.01191 0.01268 0.35% Amr::writePlotFile() 2 0.008468 0.01119 0.01255 0.34% VisMF::Write(FabArray) 2 0.008909 0.009495 0.01206 0.33% Castro::construct_old_gravity_source() 10 0.004764 0.009317 0.01076 0.29% Castro::initMFs() 1 0.006245 0.00743 0.0101 0.28% main() 1 0.005519 0.00622 0.006699 0.18% Castro::construct_new_source() 50 0.004808 0.006098 0.00667 0.18% Gravity::get_new_grav_vector() 11 0.003014 0.003968 0.004894 0.13% Amr::coarseTimeStep() 10 0.002719 0.003311 0.004488 0.12% Gravity::get_old_grav_vector() 10 0.001355 0.002251 0.002912 0.08% AmrLevel::FillPatch() 41 0.0007988 0.0009964 0.001081 0.03% Castro::finalize_do_advance() 10 0.0004192 0.0009291 0.001036 0.03% Amr::timeStep() 10 0.0001769 0.0002362 0.0004485 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002897 0.0003103 0.0003422 0.01% Castro::clean_state() 62 0.0001507 0.0001833 0.0002512 0.01% Castro::do_advance_ctu() 10 0.0001735 0.0001931 0.000221 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001098 0.0001281 0.0001719 0.00% StateDataPhysBCFunct::() 41 9.942e-05 0.0001224 0.0001431 0.00% Castro::do_old_sources() 10 7.573e-05 0.0001051 0.0001226 0.00% FabArray::ParallelCopy() 41 8.589e-05 9.751e-05 0.0001192 0.00% Castro::construct_old_source() 50 6.013e-05 8.326e-05 0.000114 0.00% Castro::Castro() 1 6.943e-05 8.487e-05 0.0001051 0.00% FillPatchSingleLevel 41 7.152e-05 8.348e-05 0.0001032 0.00% Amr::FinalizeInit() 1 3.345e-06 1.664e-05 0.0001005 0.00% Castro::do_new_sources() 10 4.515e-05 6.44e-05 8.348e-05 0.00% Castro::subcycle_advance_ctu() 10 3.718e-05 5.596e-05 6.775e-05 0.00% Castro::apply_source_to_state() 20 3.702e-05 4.761e-05 5.997e-05 0.00% Amr::defBaseLevel() 1 3.914e-05 4.666e-05 5.628e-05 0.00% Castro::expand_state() 10 1.761e-05 3.099e-05 5.376e-05 0.00% Castro::advance() 10 4.3e-05 4.768e-05 5.232e-05 0.00% Castro::construct_old_gravity() 10 3.521e-05 4.297e-05 4.648e-05 0.00% Castro::construct_new_gravity() 10 3.23e-05 3.792e-05 4.324e-05 0.00% Castro::post_timestep() 10 1.585e-05 1.948e-05 3.147e-05 0.00% Castro::check_for_nan() 20 2.248e-05 2.597e-05 2.793e-05 0.00% Amr::initialInit() 1 1.558e-06 4.252e-06 1.902e-05 0.00% Castro::computeNewDt() 9 8.615e-06 1.206e-05 1.704e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.124e-06 1.122e-05 1.615e-05 0.00% Castro::post_init() 1 8.781e-06 1.047e-05 1.233e-05 0.00% Amr::InitializeInit() 1 2.477e-06 3.603e-06 5.926e-06 0.00% Castro::computeInitialDt() 2 3.84e-06 4.646e-06 5.603e-06 0.00% Amr::init() 1 1.88e-06 2.42e-06 2.835e-06 0.00% Other 260 0.01594 0.01916 0.02295 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.655 3.655 3.656 100.00% Amr::coarseTimeStep() 10 3.443 3.443 3.443 94.18% Amr::timeStep() 10 3.427 3.428 3.429 93.79% Castro::advance() 10 3.412 3.412 3.413 93.35% Castro::subcycle_advance_ctu() 10 3.33 3.334 3.341 91.37% Castro::do_advance_ctu() 10 3.33 3.334 3.34 91.37% Castro::construct_ctu_hydro_source() 10 2.554 2.561 2.57 70.30% check_for_negative_density() 10 0.05036 0.1392 0.3481 9.52% Gravity::make_radial_gravity() 21 0.3108 0.3213 0.3445 9.42% AmrLevel::FillPatch() 41 0.2183 0.2229 0.2294 6.28% Gravity::get_new_grav_vector() 11 0.2137 0.217 0.2193 6.00% Castro::construct_old_gravity() 10 0.1865 0.1941 0.2154 5.89% Gravity::get_old_grav_vector() 10 0.1857 0.1934 0.2148 5.87% FillPatchIterator::Initialize 41 0.1781 0.1875 0.2101 5.75% Castro::construct_new_gravity() 10 0.1913 0.1943 0.1964 5.37% Amr::init() 1 0.1955 0.1957 0.1959 5.36% Castro::initialize_do_advance() 10 0.1638 0.1789 0.1856 5.08% Amr::initialInit() 1 0.1809 0.1811 0.1813 4.96% FillPatchIterator::FillFromLevel0() 41 0.1245 0.1401 0.1796 4.91% FillPatchSingleLevel 41 0.1244 0.14 0.1794 4.91% Amr::InitializeInit() 1 0.06719 0.111 0.1543 4.22% Amr::defBaseLevel() 1 0.06718 0.111 0.1543 4.22% FabArray::ParallelCopy() 41 0.09152 0.1076 0.1526 4.17% Castro::initData() 1 0.05137 0.09338 0.132 3.61% Castro::expand_state() 10 0.1197 0.1247 0.1295 3.54% Castro::estTimeStep() 21 0.03013 0.07801 0.1241 3.40% FabArray::ParallelCopy_finish() 41 0.04613 0.06479 0.1226 3.35% Castro::clean_state() 62 0.1112 0.115 0.1201 3.28% Amr::FinalizeInit() 1 0.02666 0.07014 0.114 3.12% Castro::do_old_sources() 10 0.09621 0.101 0.1046 2.86% amrex::Copy() 193 0.0553 0.08533 0.09985 2.73% Castro::computeInitialDt() 2 0.003032 0.0466 0.09049 2.48% Castro::initialize_advance() 10 0.06753 0.07481 0.07888 2.16% FabArray::setVal() 143 0.06206 0.07204 0.07743 2.12% Castro::do_new_sources() 10 0.05656 0.06524 0.07053 1.93% Castro::computeTemp() 63 0.06415 0.06697 0.06958 1.90% FabArray::ParallelCopy_nowait() 41 0.02995 0.04275 0.05143 1.41% Castro::reset_internal_energy(MultiFab) 63 0.04536 0.04731 0.04912 1.34% Castro::reset_internal_energy(Fab) 1008 0.04507 0.047 0.04879 1.33% Castro::normalize_species() 62 0.04175 0.0426 0.04484 1.23% StateDataPhysBCFunct::() 41 0.02673 0.03226 0.03651 1.00% StateData::FillBoundary(geom) 41 0.02661 0.03214 0.03639 1.00% Castro::construct_new_source() 50 0.02731 0.03184 0.03467 0.95% Castro::finalize_do_advance() 10 0.01691 0.0227 0.03183 0.87% Gravity::interpolate_monopole_grav() 21 0.0276 0.02887 0.02993 0.82% Castro::construct_new_gravity_source() 10 0.0225 0.02574 0.028 0.77% Amr::writePlotFile() 2 0.02421 0.0243 0.02443 0.67% Castro::post_init() 1 0.02375 0.02385 0.02396 0.66% Castro::post_timestep() 10 0.01511 0.01569 0.01627 0.45% FabArray::setDomainBndry() 41 0.006844 0.01291 0.01593 0.44% Castro::apply_source_to_state() 20 0.00876 0.01277 0.01463 0.40% FabArray::Saxpy() 20 0.008712 0.01272 0.01459 0.40% Castro::Castro() 1 0.009795 0.01111 0.01429 0.39% Castro::check_for_nan() 20 0.01016 0.01147 0.01333 0.36% MultiFab::contains_nan() 20 0.01013 0.01144 0.0133 0.36% VisMF::Write(FabArray) 2 0.008909 0.009495 0.01206 0.33% Castro::construct_old_source() 50 0.00483 0.009401 0.01084 0.30% Castro::construct_old_gravity_source() 10 0.004764 0.009317 0.01076 0.29% Castro::initMFs() 1 0.006245 0.00743 0.0101 0.28% Castro::computeNewDt() 9 0.009609 0.009655 0.009677 0.26% AmrLevel::AmrLevel(dm) 1 0.005233 0.006155 0.008006 0.22% Other 260 0.02094 0.02488 0.02926 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 42 B 73 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-21-g96f6d669d1bb) finalized