Initializing AMReX (24.04-22-g64d2360b209c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-22-g64d2360b209c) initialized Starting run at 05:37:24 UTC on 2024-04-18. Successfully read inputs file ... Castro git describe: 24.04-15-g5cacc9476 AMReX git describe: 24.04-22-g64d2360b2 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014352177 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373435756 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.404493401 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.38345376 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.409917271 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.385456747 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.376051098 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.3776184 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.372427337 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.370598585 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.382069848 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012535867 seconds Ending run at 05:37:28 UTC on 2024-04-18. Run time = 4.051700451 Run time without initialization = 3.856358783 Average number of zones advanced per microsecond: 0.680 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.048 ... 4.051 ... 4.052 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4736 2.6545 2.8459 70.24% check_for_negative_density() 10 0.03076 0.2287 0.4096 10.11% Gravity::make_radial_gravity() 21 0.296 0.312 0.3283 8.10% Castro::initData() 1 0.04915 0.09254 0.1318 3.25% Castro::estTimeStep() 21 0.0252 0.07064 0.1145 2.83% FabArray::ParallelCopy_finish() 41 0.04386 0.05907 0.1083 2.67% amrex::Copy() 193 0.07164 0.09281 0.1044 2.58% FabArray::setVal() 143 0.06382 0.08496 0.0943 2.33% FabArray::ParallelCopy_nowait() 41 0.04191 0.04814 0.05108 1.26% Castro::reset_internal_energy(Fab) 1008 0.04641 0.04874 0.05097 1.26% Castro::normalize_species() 62 0.04245 0.04312 0.04483 1.11% FillPatchIterator::Initialize 41 0.02945 0.03851 0.04205 1.04% StateData::FillBoundary(geom) 41 0.03081 0.0334 0.0355 0.88% Castro::construct_new_gravity_source() 10 0.02618 0.02908 0.03183 0.79% Gravity::interpolate_monopole_grav() 21 0.02749 0.02893 0.03017 0.74% Castro::initialize_do_advance() 10 0.0185 0.02086 0.0224 0.55% Castro::computeTemp() 63 0.01866 0.02022 0.0218 0.54% FabArray::Saxpy() 20 0.01435 0.01612 0.01769 0.44% FabArray::setDomainBndry() 41 0.009082 0.01404 0.01753 0.43% Amr::writePlotFile() 2 0.009103 0.01296 0.01548 0.38% MultiFab::contains_nan() 20 0.01113 0.01309 0.0151 0.37% Castro::initialize_advance() 10 0.004967 0.0128 0.01498 0.37% VisMF::Write(FabArray) 2 0.009117 0.01038 0.01383 0.34% Castro::construct_old_gravity_source() 10 0.01042 0.01242 0.01299 0.32% Castro::construct_new_source() 50 0.006468 0.007294 0.007718 0.19% Castro::initMFs() 1 0.006494 0.007319 0.007639 0.19% main() 1 0.003872 0.006272 0.007574 0.19% Gravity::get_new_grav_vector() 11 0.002771 0.003531 0.004571 0.11% Amr::coarseTimeStep() 10 0.001512 0.002238 0.003527 0.09% Gravity::get_old_grav_vector() 10 0.001463 0.002148 0.002583 0.06% Castro::finalize_do_advance() 10 0.0004542 0.001 0.00149 0.04% AmrLevel::FillPatch() 41 0.001002 0.001096 0.001171 0.03% Amr::timeStep() 10 0.0001583 0.0002651 0.0005181 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000305 0.0003217 0.0003409 0.01% Castro::clean_state() 62 0.0001644 0.0001863 0.0002274 0.01% Castro::do_advance_ctu() 10 0.0001653 0.0001923 0.0002187 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001237 0.0001394 0.0001806 0.00% StateDataPhysBCFunct::() 41 0.0001111 0.0001208 0.0001391 0.00% Castro::do_old_sources() 10 8.125e-05 0.0001053 0.0001317 0.00% FillPatchSingleLevel 41 7.485e-05 8.72e-05 0.0001154 0.00% Castro::Castro() 1 7.331e-05 9.247e-05 0.0001104 0.00% FabArray::ParallelCopy() 41 8.488e-05 9.238e-05 0.0001049 0.00% Castro::construct_old_source() 50 6.83e-05 8.523e-05 9.913e-05 0.00% Castro::do_new_sources() 10 5.591e-05 6.715e-05 8.159e-05 0.00% Amr::FinalizeInit() 1 3.54e-06 1.327e-05 7.526e-05 0.00% Castro::subcycle_advance_ctu() 10 5.071e-05 6.105e-05 7.292e-05 0.00% Amr::defBaseLevel() 1 4.386e-05 5.434e-05 6.723e-05 0.00% Castro::advance() 10 4.632e-05 5.397e-05 6.607e-05 0.00% Castro::apply_source_to_state() 20 4.108e-05 5.371e-05 6.434e-05 0.00% Castro::construct_old_gravity() 10 3.636e-05 4.509e-05 6.253e-05 0.00% Castro::construct_new_gravity() 10 3.043e-05 3.662e-05 4.608e-05 0.00% Castro::expand_state() 10 2.636e-05 3.175e-05 3.647e-05 0.00% Castro::check_for_nan() 20 1.945e-05 2.657e-05 3.112e-05 0.00% Castro::post_timestep() 10 1.406e-05 1.905e-05 2.367e-05 0.00% Castro::computeNewDt() 9 8.894e-06 1.068e-05 1.27e-05 0.00% Amr::init() 1 1.718e-06 3.325e-06 1.189e-05 0.00% Castro::post_init() 1 8.755e-06 1.035e-05 1.186e-05 0.00% Amr::InitializeInit() 1 2.833e-06 3.835e-06 9.023e-06 0.00% Castro::computeInitialDt() 2 2.645e-06 3.93e-06 4.963e-06 0.00% Amr::initialInit() 1 1.605e-06 1.871e-06 2.476e-06 0.00% Other 261 0.01675 0.01935 0.02099 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.048 4.051 4.052 100.00% Amr::coarseTimeStep() 10 3.836 3.836 3.836 94.68% Amr::timeStep() 10 3.822 3.824 3.824 94.38% Castro::advance() 10 3.807 3.808 3.808 93.99% Castro::subcycle_advance_ctu() 10 3.711 3.719 3.745 92.43% Castro::do_advance_ctu() 10 3.711 3.719 3.745 92.43% Castro::construct_ctu_hydro_source() 10 2.899 2.905 2.916 71.96% check_for_negative_density() 10 0.03076 0.2287 0.4096 10.11% Gravity::make_radial_gravity() 21 0.3135 0.3297 0.3424 8.45% AmrLevel::FillPatch() 41 0.2168 0.2324 0.2521 6.22% FillPatchIterator::Initialize 41 0.1802 0.1937 0.2233 5.51% Gravity::get_new_grav_vector() 11 0.2185 0.2201 0.222 5.48% Castro::initialize_do_advance() 10 0.1815 0.1925 0.2084 5.14% Castro::construct_old_gravity() 10 0.1878 0.1996 0.2083 5.14% Gravity::get_old_grav_vector() 10 0.1872 0.1989 0.2076 5.12% Castro::construct_new_gravity() 10 0.1963 0.1979 0.1992 4.92% Amr::init() 1 0.1947 0.1948 0.1948 4.81% FillPatchIterator::FillFromLevel0() 41 0.1288 0.1412 0.1821 4.49% FillPatchSingleLevel 41 0.1287 0.141 0.1819 4.49% Amr::initialInit() 1 0.1797 0.18 0.1802 4.45% Amr::InitializeInit() 1 0.06789 0.1138 0.1539 3.80% Amr::defBaseLevel() 1 0.06788 0.1138 0.1539 3.80% Castro::expand_state() 10 0.1226 0.1315 0.1521 3.75% FabArray::ParallelCopy() 41 0.09438 0.1074 0.1505 3.71% Castro::initData() 1 0.05257 0.09626 0.1354 3.34% Castro::clean_state() 62 0.114 0.1184 0.1234 3.04% Castro::estTimeStep() 21 0.0252 0.07064 0.1145 2.83% Castro::do_old_sources() 10 0.1072 0.1114 0.1137 2.81% Amr::FinalizeInit() 1 0.02624 0.06622 0.1123 2.77% FabArray::ParallelCopy_finish() 41 0.04386 0.05907 0.1083 2.67% amrex::Copy() 193 0.07164 0.09281 0.1044 2.58% FabArray::setVal() 143 0.06382 0.08496 0.0943 2.33% Castro::initialize_advance() 10 0.05711 0.08401 0.09172 2.26% Castro::computeInitialDt() 2 0.002274 0.04232 0.08816 2.18% Castro::do_new_sources() 10 0.06776 0.07409 0.08004 1.98% Castro::computeTemp() 63 0.06541 0.06929 0.0731 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04675 0.04907 0.05129 1.27% FabArray::ParallelCopy_nowait() 41 0.04204 0.04825 0.05119 1.26% Castro::reset_internal_energy(Fab) 1008 0.04641 0.04874 0.05097 1.26% Castro::normalize_species() 62 0.04245 0.04312 0.04483 1.11% Castro::construct_new_source() 50 0.03333 0.03637 0.03947 0.97% StateDataPhysBCFunct::() 41 0.03093 0.03352 0.03562 0.88% StateData::FillBoundary(geom) 41 0.03081 0.0334 0.0355 0.88% Castro::construct_new_gravity_source() 10 0.02618 0.02908 0.03183 0.79% Gravity::interpolate_monopole_grav() 21 0.02749 0.02893 0.03017 0.74% Amr::writePlotFile() 2 0.02718 0.02739 0.02771 0.68% Castro::finalize_do_advance() 10 0.01256 0.01991 0.02723 0.67% Castro::post_init() 1 0.02319 0.0235 0.02367 0.58% Castro::apply_source_to_state() 20 0.01441 0.01617 0.01775 0.44% FabArray::Saxpy() 20 0.01435 0.01612 0.01769 0.44% FabArray::setDomainBndry() 41 0.009082 0.01404 0.01753 0.43% Castro::post_timestep() 10 0.01514 0.01569 0.01607 0.40% Castro::check_for_nan() 20 0.01115 0.01312 0.01513 0.37% MultiFab::contains_nan() 20 0.01113 0.01309 0.0151 0.37% VisMF::Write(FabArray) 2 0.009117 0.01038 0.01383 0.34% Castro::construct_old_source() 50 0.01051 0.01251 0.01307 0.32% Castro::construct_old_gravity_source() 10 0.01042 0.01242 0.01299 0.32% Castro::Castro() 1 0.009615 0.01132 0.01232 0.30% Castro::computeNewDt() 9 0.009374 0.009423 0.009444 0.23% Castro::initMFs() 1 0.006494 0.007319 0.007639 0.19% Other 261 0.02787 0.03163 0.03409 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-22-g64d2360b209c) finalized