Initializing AMReX (24.04-22-g64d2360b209c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-22-g64d2360b209c) initialized Starting run at 23:24:59 UTC on 2024-04-19. Successfully read inputs file ... Castro git describe: 24.04-23-gc71c4dfd3 AMReX git describe: 24.04-22-g64d2360b2 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015561173 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351054795 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.365762472 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.352349285 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.371796518 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327503435 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.309810423 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30878478 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310533152 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309060809 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309638366 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007452055 seconds Ending run at 23:25:03 UTC on 2024-04-19. Run time = 3.540462522 Run time without initialization = 3.32835418 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.54 ... 3.54 ... 3.541 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3007 2.3623 2.4246 68.48% Gravity::make_radial_gravity() 21 0.2919 0.3019 0.3148 8.89% check_for_negative_density() 10 0.03799 0.1034 0.1696 4.79% Castro::initData() 1 0.0531 0.09273 0.1435 4.05% Castro::estTimeStep() 21 0.03418 0.07962 0.1161 3.28% amrex::Copy() 193 0.06593 0.07718 0.08355 2.36% FabArray::setVal() 143 0.06425 0.06888 0.07564 2.14% FabArray::ParallelCopy_finish() 41 0.03515 0.04731 0.0679 1.92% Castro::reset_internal_energy(Fab) 1008 0.04366 0.04576 0.04889 1.38% Castro::normalize_species() 62 0.04127 0.0423 0.04505 1.27% FabArray::ParallelCopy_nowait() 41 0.03368 0.03948 0.04175 1.18% FillPatchIterator::Initialize 41 0.02814 0.03258 0.03497 0.99% StateData::FillBoundary(geom) 41 0.02809 0.03144 0.03425 0.97% Gravity::interpolate_monopole_grav() 21 0.02795 0.02926 0.0303 0.86% Castro::construct_new_gravity_source() 10 0.02263 0.02428 0.02698 0.76% Castro::computeTemp() 63 0.01749 0.01901 0.02065 0.58% Castro::initialize_do_advance() 10 0.01238 0.01714 0.01969 0.56% FabArray::setDomainBndry() 41 0.008427 0.01135 0.0141 0.40% Castro::initialize_advance() 10 0.009689 0.01134 0.01308 0.37% FabArray::Saxpy() 20 0.01097 0.01191 0.01252 0.35% VisMF::Write(FabArray) 2 0.008801 0.009516 0.01244 0.35% Amr::writePlotFile() 2 0.007991 0.01101 0.01183 0.33% Castro::initMFs() 1 0.00664 0.008297 0.01164 0.33% MultiFab::contains_nan() 20 0.009173 0.01011 0.01144 0.32% Castro::construct_old_gravity_source() 10 0.006527 0.008855 0.009471 0.27% StateData::define() 4 0.005393 0.006777 0.009431 0.27% Castro::construct_new_source() 50 0.005384 0.005951 0.006205 0.18% Gravity::get_new_grav_vector() 11 0.002933 0.003749 0.004319 0.12% main() 1 0.003309 0.00367 0.00398 0.11% Amr::coarseTimeStep() 10 0.000819 0.002612 0.003406 0.10% Gravity::get_old_grav_vector() 10 0.00163 0.00212 0.002631 0.07% Castro::finalize_do_advance() 10 0.0003571 0.0009104 0.001025 0.03% AmrLevel::FillPatch() 41 0.000653 0.0008585 0.0009265 0.03% Amr::timeStep() 10 0.0001609 0.000223 0.0004193 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002737 0.0002963 0.0003182 0.01% Castro::do_advance_ctu() 10 0.0001444 0.0001745 0.0002084 0.01% Castro::clean_state() 62 0.0001525 0.0001695 0.0001872 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001036 0.0001136 0.0001337 0.00% Castro::Castro() 1 7.812e-05 9.702e-05 0.0001306 0.00% StateDataPhysBCFunct::() 41 9.525e-05 0.0001007 0.0001073 0.00% Castro::do_old_sources() 10 7.969e-05 8.996e-05 0.0001038 0.00% Amr::FinalizeInit() 1 3.732e-06 1.855e-05 0.0001012 0.00% FabArray::ParallelCopy() 41 7.587e-05 8.428e-05 9.441e-05 0.00% FillPatchSingleLevel 41 7.036e-05 7.89e-05 8.854e-05 0.00% Castro::construct_old_source() 50 6.579e-05 7.61e-05 8.708e-05 0.00% Amr::defBaseLevel() 1 4.958e-05 5.803e-05 7.853e-05 0.00% Castro::do_new_sources() 10 5.009e-05 5.797e-05 6.782e-05 0.00% Castro::apply_source_to_state() 20 3.639e-05 4.307e-05 5.418e-05 0.00% Castro::subcycle_advance_ctu() 10 4.152e-05 4.682e-05 5.253e-05 0.00% Castro::advance() 10 3.874e-05 4.485e-05 4.999e-05 0.00% Castro::construct_old_gravity() 10 3.057e-05 3.622e-05 4.74e-05 0.00% Castro::construct_new_gravity() 10 2.796e-05 3.215e-05 3.529e-05 0.00% Castro::expand_state() 10 2.282e-05 2.582e-05 3.038e-05 0.00% Castro::check_for_nan() 20 2.083e-05 2.338e-05 2.843e-05 0.00% Castro::post_timestep() 10 1.473e-05 1.757e-05 2.655e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.714e-06 1.467e-05 2.371e-05 0.00% Castro::post_init() 1 9.427e-06 1.055e-05 1.19e-05 0.00% Amr::InitializeInit() 1 2.975e-06 4.159e-06 8.832e-06 0.00% Castro::computeInitialDt() 2 3.795e-06 4.405e-06 5.306e-06 0.00% Amr::init() 1 2.159e-06 2.75e-06 3.745e-06 0.00% Amr::initialInit() 1 1.53e-06 1.873e-06 2.333e-06 0.00% Other 265 0.01219 0.01468 0.01663 0.47% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.54 3.541 100.00% Amr::coarseTimeStep() 10 3.317 3.317 3.317 93.69% Amr::timeStep() 10 3.303 3.304 3.306 93.37% Castro::advance() 10 3.288 3.288 3.289 92.89% Castro::subcycle_advance_ctu() 10 3.207 3.213 3.217 90.85% Castro::do_advance_ctu() 10 3.207 3.213 3.217 90.85% Castro::construct_ctu_hydro_source() 10 2.484 2.487 2.491 70.36% Gravity::make_radial_gravity() 21 0.3071 0.318 0.3295 9.31% Gravity::get_new_grav_vector() 11 0.2133 0.2152 0.2167 6.12% Amr::init() 1 0.2109 0.2114 0.2116 5.98% AmrLevel::FillPatch() 41 0.1856 0.1941 0.2041 5.76% Amr::initialInit() 1 0.1951 0.1956 0.1959 5.53% Castro::construct_old_gravity() 10 0.1795 0.1865 0.1958 5.53% Gravity::get_old_grav_vector() 10 0.1787 0.1858 0.1951 5.51% Castro::construct_new_gravity() 10 0.1882 0.1895 0.1907 5.39% FillPatchIterator::Initialize 41 0.1547 0.1626 0.17 4.80% check_for_negative_density() 10 0.03799 0.1034 0.1696 4.79% Castro::initialize_do_advance() 10 0.1504 0.1618 0.1689 4.77% Amr::InitializeInit() 1 0.08237 0.1161 0.1658 4.68% Amr::defBaseLevel() 1 0.08236 0.116 0.1658 4.68% Castro::initData() 1 0.05669 0.09641 0.1475 4.17% FillPatchIterator::FillFromLevel0() 41 0.1084 0.1187 0.1302 3.68% FillPatchSingleLevel 41 0.1083 0.1186 0.1301 3.67% Castro::clean_state() 62 0.1105 0.114 0.1213 3.43% Castro::estTimeStep() 21 0.03418 0.07962 0.1161 3.28% Castro::expand_state() 10 0.1034 0.1088 0.1156 3.27% Amr::FinalizeInit() 1 0.03012 0.0795 0.1128 3.19% FabArray::ParallelCopy() 41 0.07546 0.08697 0.1018 2.87% Castro::do_old_sources() 10 0.08774 0.09054 0.09297 2.63% Castro::computeInitialDt() 2 0.0025 0.0521 0.08542 2.41% amrex::Copy() 193 0.06593 0.07718 0.08355 2.36% Castro::initialize_advance() 10 0.06831 0.07139 0.07747 2.19% FabArray::setVal() 143 0.06425 0.06888 0.07564 2.14% Castro::do_new_sources() 10 0.06001 0.06398 0.07043 1.99% Castro::computeTemp() 63 0.06184 0.06507 0.06983 1.97% FabArray::ParallelCopy_finish() 41 0.03515 0.04731 0.0679 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04396 0.04606 0.04918 1.39% Castro::reset_internal_energy(Fab) 1008 0.04366 0.04576 0.04889 1.38% Castro::normalize_species() 62 0.04127 0.0423 0.04505 1.27% FabArray::ParallelCopy_nowait() 41 0.03379 0.03958 0.04184 1.18% StateDataPhysBCFunct::() 41 0.02819 0.03154 0.03435 0.97% StateData::FillBoundary(geom) 41 0.02809 0.03144 0.03425 0.97% Castro::construct_new_source() 50 0.02866 0.03023 0.03296 0.93% Gravity::interpolate_monopole_grav() 21 0.02795 0.02926 0.0303 0.86% Castro::post_init() 1 0.02667 0.02692 0.02723 0.77% Castro::construct_new_gravity_source() 10 0.02263 0.02428 0.02698 0.76% Amr::writePlotFile() 2 0.02318 0.02339 0.02366 0.67% Castro::finalize_do_advance() 10 0.01319 0.01928 0.02362 0.67% Castro::post_timestep() 10 0.01514 0.01562 0.01682 0.47% Castro::Castro() 1 0.009515 0.01223 0.01613 0.46% FabArray::setDomainBndry() 41 0.008427 0.01135 0.0141 0.40% Castro::apply_source_to_state() 20 0.01101 0.01195 0.01256 0.35% FabArray::Saxpy() 20 0.01097 0.01191 0.01252 0.35% VisMF::Write(FabArray) 2 0.008801 0.009516 0.01244 0.35% Castro::initMFs() 1 0.00664 0.008297 0.01164 0.33% Castro::check_for_nan() 20 0.009194 0.01013 0.01146 0.32% MultiFab::contains_nan() 20 0.009173 0.01011 0.01144 0.32% Castro::construct_old_source() 50 0.006595 0.008931 0.009555 0.27% Castro::construct_old_gravity_source() 10 0.006527 0.008855 0.009471 0.27% AmrLevel::AmrLevel(dm) 1 0.005404 0.006792 0.009453 0.27% StateData::define() 4 0.005393 0.006777 0.009431 0.27% Other 265 0.02586 0.02947 0.03238 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 42 B 64 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-22-g64d2360b209c) finalized