Initializing AMReX (24.04-22-g64d2360b209c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-22-g64d2360b209c) initialized Starting run at 05:21:14 UTC on 2024-04-19. Successfully read inputs file ... Castro git describe: 24.04-15-g5cacc9476 AMReX git describe: 24.04-22-g64d2360b2 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.173519383 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351481406 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.359917204 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332470568 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.380264403 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.323643913 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.30850324 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30623751 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306980132 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30718357 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31027693 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008010608 seconds Ending run at 05:21:18 UTC on 2024-04-19. Run time = 3.662680262 Run time without initialization = 3.299812818 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.662 ... 3.663 ... 3.663 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2381 2.3640 2.4126 65.87% Gravity::make_radial_gravity() 21 0.2909 0.2985 0.3095 8.45% check_for_negative_density() 10 0.03344 0.08312 0.2127 5.81% Amr::writePlotFile() 2 0.167 0.1694 0.17 4.64% Castro::initData() 1 0.04895 0.09464 0.1376 3.76% Castro::estTimeStep() 21 0.0252 0.07245 0.1218 3.33% amrex::Copy() 193 0.061 0.07736 0.08535 2.33% FabArray::ParallelCopy_finish() 41 0.04041 0.05058 0.07864 2.15% FabArray::setVal() 143 0.061 0.06421 0.06762 1.85% Castro::reset_internal_energy(Fab) 1008 0.04331 0.04601 0.04847 1.32% Castro::normalize_species() 62 0.04126 0.04169 0.0426 1.16% FabArray::ParallelCopy_nowait() 41 0.03309 0.03887 0.04123 1.13% FillPatchIterator::Initialize 41 0.02685 0.03249 0.03472 0.95% StateData::FillBoundary(geom) 41 0.02757 0.03043 0.03214 0.88% Gravity::interpolate_monopole_grav() 21 0.0271 0.02889 0.0296 0.81% Castro::construct_new_gravity_source() 10 0.02223 0.02352 0.02493 0.68% Castro::computeTemp() 63 0.01738 0.01919 0.02074 0.57% Castro::initialize_do_advance() 10 0.01261 0.01605 0.01728 0.47% FabArray::setDomainBndry() 41 0.008981 0.01152 0.01355 0.37% VisMF::Write(FabArray) 2 0.009007 0.009797 0.01325 0.36% FabArray::Saxpy() 20 0.01046 0.01187 0.01282 0.35% Castro::initialize_advance() 10 0.005461 0.009747 0.01249 0.34% MultiFab::contains_nan() 20 0.009916 0.01045 0.01159 0.32% Castro::construct_old_gravity_source() 10 0.006491 0.008847 0.009521 0.26% Castro::initMFs() 1 0.006958 0.007737 0.008253 0.23% Castro::construct_new_source() 50 0.005648 0.005933 0.006129 0.17% Gravity::get_new_grav_vector() 11 0.002962 0.003567 0.004034 0.11% main() 1 0.003135 0.003425 0.003679 0.10% Amr::coarseTimeStep() 10 0.00216 0.003089 0.003648 0.10% Gravity::get_old_grav_vector() 10 0.001548 0.002015 0.002558 0.07% AmrLevel::FillPatch() 41 0.0006832 0.0009801 0.00119 0.03% Castro::finalize_do_advance() 10 0.0003659 0.0009629 0.001077 0.03% Amr::timeStep() 10 0.0001785 0.0002141 0.000395 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002765 0.0002932 0.000319 0.01% Castro::do_advance_ctu() 10 0.0001466 0.0001725 0.0002072 0.01% Castro::clean_state() 62 0.0001331 0.0001632 0.0001948 0.01% FillPatchIterator::FillFromLevel0() 41 9.359e-05 0.0001107 0.0001351 0.00% Castro::Castro() 1 8e-05 0.000109 0.0001324 0.00% StateDataPhysBCFunct::() 41 8.811e-05 0.0001029 0.0001114 0.00% Castro::do_old_sources() 10 8.157e-05 9.349e-05 0.0001106 0.00% Castro::construct_old_source() 50 5.736e-05 7.403e-05 9.378e-05 0.00% FabArray::ParallelCopy() 41 7.647e-05 8.261e-05 8.833e-05 0.00% FillPatchSingleLevel 41 6.5e-05 7.33e-05 8.737e-05 0.00% Amr::FinalizeInit() 1 4.117e-06 1.5e-05 8.42e-05 0.00% Amr::defBaseLevel() 1 5.255e-05 6.389e-05 7.692e-05 0.00% Castro::do_new_sources() 10 5.159e-05 5.689e-05 6.555e-05 0.00% Castro::subcycle_advance_ctu() 10 3.916e-05 4.786e-05 5.76e-05 0.00% Castro::advance() 10 4.024e-05 4.544e-05 4.975e-05 0.00% Castro::apply_source_to_state() 20 3.267e-05 4.085e-05 4.948e-05 0.00% Castro::construct_old_gravity() 10 3.213e-05 3.788e-05 4.417e-05 0.00% Castro::construct_new_gravity() 10 2.936e-05 3.473e-05 3.819e-05 0.00% Castro::expand_state() 10 1.994e-05 2.424e-05 2.706e-05 0.00% Castro::check_for_nan() 20 2.226e-05 2.366e-05 2.499e-05 0.00% Castro::post_timestep() 10 1.498e-05 1.653e-05 1.858e-05 0.00% Castro::post_init() 1 8.497e-06 1.175e-05 1.797e-05 0.00% Castro::computeNewDt() 9 8.631e-06 1.015e-05 1.156e-05 0.00% Amr::InitializeInit() 1 2.988e-06 4.948e-06 8.936e-06 0.00% Castro::computeInitialDt() 2 4.068e-06 4.653e-06 5.668e-06 0.00% Amr::init() 1 1.83e-06 2.051e-06 2.473e-06 0.00% Amr::initialInit() 1 1.398e-06 1.857e-06 2.162e-06 0.00% Other 261 0.01585 0.01921 0.02063 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.662 3.662 3.663 100.00% Amr::coarseTimeStep() 10 3.288 3.288 3.288 89.76% Amr::timeStep() 10 3.274 3.274 3.275 89.42% Castro::advance() 10 3.259 3.259 3.259 88.98% Castro::subcycle_advance_ctu() 10 3.186 3.19 3.192 87.14% Castro::do_advance_ctu() 10 3.186 3.19 3.192 87.14% Castro::construct_ctu_hydro_source() 10 2.465 2.468 2.475 67.57% Amr::init() 1 0.3621 0.3622 0.3623 9.89% Gravity::make_radial_gravity() 21 0.3066 0.3149 0.3232 8.82% Gravity::get_new_grav_vector() 11 0.2087 0.2138 0.2154 5.88% check_for_negative_density() 10 0.03344 0.08312 0.2127 5.81% AmrLevel::FillPatch() 41 0.1877 0.1968 0.205 5.60% Castro::construct_old_gravity() 10 0.1779 0.1834 0.1928 5.26% Gravity::get_old_grav_vector() 10 0.1771 0.1828 0.1922 5.25% Castro::construct_new_gravity() 10 0.1852 0.1893 0.1911 5.22% Amr::initialInit() 1 0.1884 0.189 0.1891 5.16% Amr::writePlotFile() 2 0.1817 0.1818 0.1823 4.98% FillPatchIterator::Initialize 41 0.1572 0.1644 0.1756 4.80% Castro::initialize_do_advance() 10 0.1554 0.163 0.1692 4.62% Amr::InitializeInit() 1 0.06887 0.1175 0.1607 4.39% Amr::defBaseLevel() 1 0.06886 0.1175 0.1607 4.39% Castro::initData() 1 0.05268 0.09843 0.1416 3.87% FillPatchIterator::FillFromLevel0() 41 0.1111 0.1203 0.1398 3.82% FillPatchSingleLevel 41 0.111 0.1202 0.1397 3.81% Castro::estTimeStep() 21 0.0252 0.07245 0.1218 3.33% Amr::FinalizeInit() 1 0.02829 0.07153 0.1195 3.26% Castro::expand_state() 10 0.106 0.1114 0.1169 3.19% Castro::clean_state() 62 0.1081 0.1124 0.1164 3.18% FabArray::ParallelCopy() 41 0.07969 0.08963 0.1119 3.06% Castro::do_old_sources() 10 0.08812 0.091 0.09412 2.57% Castro::computeInitialDt() 2 0.002239 0.04547 0.09396 2.57% amrex::Copy() 193 0.061 0.07736 0.08535 2.33% FabArray::ParallelCopy_finish() 41 0.04041 0.05058 0.07864 2.15% Castro::initialize_advance() 10 0.06321 0.06569 0.06965 1.90% Castro::computeTemp() 63 0.06117 0.0655 0.06952 1.90% FabArray::setVal() 143 0.061 0.06421 0.06762 1.85% Castro::do_new_sources() 10 0.0587 0.06179 0.0661 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04359 0.04631 0.04878 1.33% Castro::reset_internal_energy(Fab) 1008 0.04331 0.04601 0.04847 1.32% Castro::normalize_species() 62 0.04126 0.04169 0.0426 1.16% FabArray::ParallelCopy_nowait() 41 0.0332 0.03896 0.04132 1.13% StateDataPhysBCFunct::() 41 0.02766 0.03053 0.03224 0.88% StateData::FillBoundary(geom) 41 0.02757 0.03043 0.03214 0.88% Castro::construct_new_source() 50 0.02818 0.02945 0.03084 0.84% Gravity::interpolate_monopole_grav() 21 0.0271 0.02889 0.0296 0.81% Castro::post_init() 1 0.02465 0.02558 0.02583 0.71% Castro::construct_new_gravity_source() 10 0.02223 0.02352 0.02493 0.68% Castro::finalize_do_advance() 10 0.01448 0.01875 0.02226 0.61% Castro::post_timestep() 10 0.01483 0.01534 0.01625 0.44% FabArray::setDomainBndry() 41 0.008981 0.01152 0.01355 0.37% VisMF::Write(FabArray) 2 0.009007 0.009797 0.01325 0.36% Castro::Castro() 1 0.009959 0.0122 0.01317 0.36% Castro::apply_source_to_state() 20 0.01049 0.01191 0.01287 0.35% FabArray::Saxpy() 20 0.01046 0.01187 0.01282 0.35% Castro::check_for_nan() 20 0.00994 0.01047 0.01161 0.32% MultiFab::contains_nan() 20 0.009916 0.01045 0.01159 0.32% Castro::construct_old_source() 50 0.006549 0.008921 0.009615 0.26% Castro::construct_old_gravity_source() 10 0.006491 0.008847 0.009521 0.26% Castro::computeNewDt() 9 0.009208 0.009217 0.009234 0.25% Castro::initMFs() 1 0.006958 0.007737 0.008253 0.23% Other 261 0.02644 0.03077 0.03386 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-22-g64d2360b209c) finalized