Initializing AMReX (24.04-24-gb752027c1aeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-24-gb752027c1aeb) initialized Starting run at 05:22:10 UTC on 2024-04-22. Successfully read inputs file ... Castro git describe: 24.04-17-g4ef6d25ac AMReX git describe: 24.04-24-gb752027c1 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014555114 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353763705 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362830233 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343404275 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.372106698 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.32628284 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.308749124 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310425563 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310744059 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310155407 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310973691 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007421131 seconds Ending run at 05:22:14 UTC on 2024-04-22. Run time = 3.570096204 Run time without initialization = 3.321627246 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.569 ... 3.57 ... 3.57 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2412 2.3674 2.4389 68.31% Gravity::make_radial_gravity() 21 0.2905 0.2973 0.3112 8.72% check_for_negative_density() 10 0.02956 0.1031 0.2335 6.54% Castro::initData() 1 0.05249 0.1029 0.1742 4.88% Castro::estTimeStep() 21 0.02338 0.105 0.1607 4.50% amrex::Copy() 193 0.05972 0.07677 0.08434 2.36% FabArray::ParallelCopy_finish() 41 0.03532 0.04877 0.08213 2.30% FabArray::setVal() 143 0.06137 0.0659 0.07194 2.02% Castro::reset_internal_energy(Fab) 1008 0.04511 0.0472 0.04926 1.38% Castro::normalize_species() 62 0.04173 0.04282 0.04458 1.25% FabArray::ParallelCopy_nowait() 41 0.03282 0.03903 0.04117 1.15% FillPatchIterator::Initialize 41 0.02678 0.03199 0.03422 0.96% StateData::FillBoundary(geom) 41 0.02686 0.03053 0.03207 0.90% Gravity::interpolate_monopole_grav() 21 0.02727 0.02909 0.03001 0.84% Castro::construct_new_gravity_source() 10 0.02267 0.0238 0.0259 0.73% Castro::computeTemp() 63 0.01914 0.01978 0.02037 0.57% Castro::initialize_do_advance() 10 0.01279 0.01657 0.01865 0.52% FabArray::setDomainBndry() 41 0.008688 0.01218 0.01418 0.40% VisMF::Write(FabArray) 2 0.008689 0.009454 0.01308 0.37% FabArray::Saxpy() 20 0.01029 0.01184 0.01252 0.35% Castro::initialize_advance() 10 0.005492 0.009599 0.01226 0.34% Castro::initMFs() 1 0.007391 0.008515 0.0118 0.33% MultiFab::contains_nan() 20 0.009296 0.0102 0.01136 0.32% Amr::writePlotFile() 2 0.0074 0.01019 0.011 0.31% StateData::define() 4 0.006074 0.00689 0.009335 0.26% Castro::construct_old_gravity_source() 10 0.006453 0.008729 0.009258 0.26% Castro::construct_new_source() 50 0.005359 0.005986 0.006269 0.18% main() 1 0.003138 0.003594 0.004094 0.11% Gravity::get_new_grav_vector() 11 0.002949 0.003506 0.003781 0.11% Amr::coarseTimeStep() 10 0.001349 0.002308 0.002995 0.08% Gravity::get_old_grav_vector() 10 0.001464 0.002116 0.002663 0.07% Castro::finalize_do_advance() 10 0.0003489 0.0008969 0.001097 0.03% AmrLevel::FillPatch() 41 0.0006351 0.0008693 0.000992 0.03% Amr::timeStep() 10 0.0001573 0.0002141 0.0003819 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002894 0.0002993 0.0003138 0.01% Castro::Castro() 1 9.362e-05 0.0001168 0.0002069 0.01% Castro::do_advance_ctu() 10 0.000147 0.0001701 0.0001976 0.01% Castro::clean_state() 62 0.0001382 0.0001555 0.0001788 0.01% StateDataPhysBCFunct::() 41 9.798e-05 0.0001057 0.0001113 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001033 0.0001064 0.0001089 0.00% Castro::do_old_sources() 10 6.541e-05 8.98e-05 0.0001019 0.00% FabArray::ParallelCopy() 41 7.021e-05 8.423e-05 8.837e-05 0.00% Castro::construct_old_source() 50 4.946e-05 7.224e-05 8.46e-05 0.00% FillPatchSingleLevel 41 7.06e-05 7.543e-05 8.044e-05 0.00% Amr::FinalizeInit() 1 3.741e-06 1.369e-05 7.416e-05 0.00% Amr::defBaseLevel() 1 4.44e-05 5.225e-05 6.651e-05 0.00% Castro::do_new_sources() 10 4.865e-05 5.799e-05 6.636e-05 0.00% Castro::subcycle_advance_ctu() 10 3.484e-05 4.876e-05 5.742e-05 0.00% Castro::apply_source_to_state() 20 3.548e-05 4.031e-05 5.37e-05 0.00% Castro::advance() 10 3.851e-05 4.478e-05 5.067e-05 0.00% Castro::construct_new_gravity() 10 3.046e-05 3.5e-05 4.276e-05 0.00% Castro::construct_old_gravity() 10 3.139e-05 3.72e-05 4.258e-05 0.00% Castro::expand_state() 10 2.049e-05 2.462e-05 3.066e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.038e-05 1.55e-05 2.592e-05 0.00% Castro::check_for_nan() 20 1.991e-05 2.22e-05 2.471e-05 0.00% Castro::post_timestep() 10 1.471e-05 1.588e-05 1.796e-05 0.00% Castro::post_init() 1 7.387e-06 1e-05 1.402e-05 0.00% Amr::InitializeInit() 1 3.186e-06 5.077e-06 7.152e-06 0.00% Castro::computeInitialDt() 2 3.478e-06 4.072e-06 4.865e-06 0.00% Amr::init() 1 1.638e-06 2.293e-06 3.125e-06 0.00% Amr::initialInit() 1 1.514e-06 1.849e-06 2.249e-06 0.00% Other 265 0.009796 0.01302 0.01515 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.569 3.57 3.57 100.00% Amr::coarseTimeStep() 10 3.31 3.31 3.31 92.72% Amr::timeStep() 10 3.297 3.298 3.299 92.39% Castro::advance() 10 3.281 3.282 3.282 91.93% Castro::subcycle_advance_ctu() 10 3.206 3.211 3.216 90.07% Castro::do_advance_ctu() 10 3.205 3.211 3.216 90.07% Castro::construct_ctu_hydro_source() 10 2.49 2.492 2.499 69.99% Gravity::make_radial_gravity() 21 0.3067 0.3137 0.3242 9.08% Amr::init() 1 0.2475 0.2478 0.2479 6.94% check_for_negative_density() 10 0.02956 0.1031 0.2335 6.54% Amr::initialInit() 1 0.2327 0.2331 0.2334 6.54% Gravity::get_new_grav_vector() 11 0.2086 0.2117 0.2138 5.99% Amr::InitializeInit() 1 0.07462 0.1269 0.2038 5.71% Amr::defBaseLevel() 1 0.07461 0.1269 0.2038 5.71% AmrLevel::FillPatch() 41 0.182 0.1947 0.2026 5.67% Castro::construct_old_gravity() 10 0.1798 0.1839 0.1944 5.44% Gravity::get_old_grav_vector() 10 0.1791 0.1833 0.1938 5.43% Castro::construct_new_gravity() 10 0.1837 0.1868 0.1882 5.27% Castro::initData() 1 0.05611 0.1067 0.1781 4.99% FillPatchIterator::Initialize 41 0.1528 0.163 0.1777 4.98% Castro::initialize_do_advance() 10 0.1549 0.1623 0.1676 4.69% Castro::estTimeStep() 21 0.02338 0.105 0.1607 4.50% Amr::FinalizeInit() 1 0.02935 0.1061 0.1585 4.44% FillPatchIterator::FillFromLevel0() 41 0.1066 0.1188 0.1423 3.98% FillPatchSingleLevel 41 0.1065 0.1187 0.1421 3.98% Castro::computeInitialDt() 2 0.002624 0.07974 0.1322 3.70% Castro::clean_state() 62 0.1117 0.1152 0.1188 3.33% Castro::expand_state() 10 0.1015 0.1101 0.1158 3.24% FabArray::ParallelCopy() 41 0.07502 0.08797 0.1151 3.22% Castro::do_old_sources() 10 0.08817 0.0906 0.09208 2.58% amrex::Copy() 193 0.05972 0.07677 0.08434 2.36% FabArray::ParallelCopy_finish() 41 0.03532 0.04877 0.08213 2.30% Castro::initialize_advance() 10 0.06208 0.06727 0.0729 2.04% FabArray::setVal() 143 0.06137 0.0659 0.07194 2.02% Castro::computeTemp() 63 0.06454 0.06728 0.06965 1.95% Castro::do_new_sources() 10 0.05993 0.06336 0.06847 1.92% Castro::reset_internal_energy(MultiFab) 63 0.0454 0.0475 0.04958 1.39% Castro::reset_internal_energy(Fab) 1008 0.04511 0.0472 0.04926 1.38% Castro::normalize_species() 62 0.04173 0.04282 0.04458 1.25% FabArray::ParallelCopy_nowait() 41 0.03292 0.03912 0.04126 1.16% StateDataPhysBCFunct::() 41 0.02696 0.03063 0.03218 0.90% StateData::FillBoundary(geom) 41 0.02686 0.03053 0.03207 0.90% Castro::construct_new_source() 50 0.02809 0.02978 0.03203 0.90% Gravity::interpolate_monopole_grav() 21 0.02727 0.02909 0.03001 0.84% Castro::post_init() 1 0.02589 0.02611 0.02639 0.74% Castro::construct_new_gravity_source() 10 0.02267 0.0238 0.0259 0.73% Amr::writePlotFile() 2 0.02186 0.02219 0.02238 0.63% Castro::finalize_do_advance() 10 0.01159 0.0172 0.02093 0.59% Castro::Castro() 1 0.01159 0.01294 0.01636 0.46% Castro::post_timestep() 10 0.01531 0.01571 0.01636 0.46% FabArray::setDomainBndry() 41 0.008688 0.01218 0.01418 0.40% VisMF::Write(FabArray) 2 0.008689 0.009454 0.01308 0.37% Castro::apply_source_to_state() 20 0.01033 0.01188 0.01256 0.35% FabArray::Saxpy() 20 0.01029 0.01184 0.01252 0.35% Castro::initMFs() 1 0.007391 0.008515 0.0118 0.33% Castro::check_for_nan() 20 0.009316 0.01022 0.01139 0.32% MultiFab::contains_nan() 20 0.009296 0.0102 0.01136 0.32% AmrLevel::AmrLevel(dm) 1 0.006085 0.006906 0.00936 0.26% Castro::construct_old_source() 50 0.006503 0.008801 0.009343 0.26% StateData::define() 4 0.006074 0.00689 0.009335 0.26% Castro::construct_old_gravity_source() 10 0.006453 0.008729 0.009258 0.26% Other 265 0.02334 0.02733 0.03049 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 43 B 61 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-24-gb752027c1aeb) finalized