Initializing AMReX (24.04-24-gb752027c1aeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-24-gb752027c1aeb) initialized Starting run at 05:27:30 UTC on 2024-04-23. Successfully read inputs file ... Castro git describe: 24.04-19-g9935adf51 AMReX git describe: 24.04-24-gb752027c1 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01454275 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357086307 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.36933217 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331920771 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.37476577 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329899375 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.311352052 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.307983936 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307316207 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.3073599 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30753021 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007415553 seconds Ending run at 05:27:33 UTC on 2024-04-23. Run time = 3.526318129 Run time without initialization = 3.316908603 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.526 ... 3.526 ... 3.526 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2766 2.3634 2.3882 67.72% Gravity::make_radial_gravity() 21 0.2937 0.3011 0.3094 8.77% check_for_negative_density() 10 0.04975 0.07547 0.1646 4.67% Castro::initData() 1 0.05699 0.09692 0.1433 4.06% Castro::estTimeStep() 21 0.0231 0.07858 0.1159 3.29% amrex::Copy() 193 0.07569 0.07996 0.08648 2.45% FabArray::setVal() 143 0.06444 0.07321 0.0836 2.37% FabArray::ParallelCopy_finish() 41 0.0402 0.04861 0.05415 1.54% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04685 0.04767 1.35% Castro::normalize_species() 62 0.04081 0.04218 0.04343 1.23% FabArray::ParallelCopy_nowait() 41 0.03831 0.04004 0.04157 1.18% FillPatchIterator::Initialize 41 0.02862 0.03283 0.03474 0.99% StateData::FillBoundary(geom) 41 0.02803 0.03076 0.0329 0.93% Gravity::interpolate_monopole_grav() 21 0.02743 0.02907 0.02982 0.85% Castro::construct_new_gravity_source() 10 0.02347 0.0251 0.02744 0.78% Castro::computeTemp() 63 0.01942 0.0197 0.01995 0.57% Castro::initialize_do_advance() 10 0.01365 0.01738 0.0198 0.56% FabArray::Saxpy() 20 0.01145 0.01257 0.01436 0.41% FabArray::setDomainBndry() 41 0.009347 0.01231 0.01378 0.39% Castro::initialize_advance() 10 0.009568 0.01133 0.01338 0.38% VisMF::Write(FabArray) 2 0.008814 0.009238 0.0115 0.33% MultiFab::contains_nan() 20 0.009839 0.01061 0.01133 0.32% Amr::writePlotFile() 2 0.007862 0.009909 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.007926 0.009417 0.01004 0.28% Castro::initMFs() 1 0.007529 0.007715 0.00786 0.22% Castro::construct_new_source() 50 0.00605 0.006148 0.006235 0.18% Gravity::get_new_grav_vector() 11 0.003171 0.0042 0.005428 0.15% main() 1 0.003597 0.003895 0.004158 0.12% Amr::coarseTimeStep() 10 0.001372 0.002373 0.003042 0.09% Gravity::get_old_grav_vector() 10 0.001585 0.00199 0.002363 0.07% Castro::finalize_do_advance() 10 0.00107 0.001167 0.001546 0.04% AmrLevel::FillPatch() 41 0.0007994 0.0009264 0.001093 0.03% Amr::timeStep() 10 0.000158 0.00021 0.0004107 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002907 0.0002987 0.0003113 0.01% Castro::do_advance_ctu() 10 0.0001595 0.0001674 0.0001869 0.01% Castro::clean_state() 62 0.0001475 0.0001569 0.0001698 0.00% Castro::Castro() 1 0.0001017 0.0001257 0.0001524 0.00% FillPatchIterator::FillFromLevel0() 41 9.865e-05 0.000108 0.0001163 0.00% StateDataPhysBCFunct::() 41 9.698e-05 0.0001061 0.0001158 0.00% Castro::do_old_sources() 10 7.878e-05 8.878e-05 9.975e-05 0.00% Amr::FinalizeInit() 1 3.889e-06 1.586e-05 9.453e-05 0.00% FabArray::ParallelCopy() 41 7.704e-05 8.32e-05 8.951e-05 0.00% Castro::construct_old_source() 50 5.551e-05 7.098e-05 8.574e-05 0.00% FillPatchSingleLevel 41 7.06e-05 7.478e-05 8.184e-05 0.00% Castro::do_new_sources() 10 5.163e-05 6.01e-05 6.568e-05 0.00% Amr::defBaseLevel() 1 4.802e-05 5.766e-05 6.453e-05 0.00% Castro::subcycle_advance_ctu() 10 4.08e-05 5.104e-05 5.673e-05 0.00% Castro::advance() 10 3.961e-05 4.358e-05 5.07e-05 0.00% Castro::apply_source_to_state() 20 3.951e-05 4.328e-05 4.903e-05 0.00% Castro::construct_old_gravity() 10 3.171e-05 3.612e-05 4.716e-05 0.00% Castro::construct_new_gravity() 10 3.034e-05 3.597e-05 4.557e-05 0.00% Castro::check_for_nan() 20 1.932e-05 2.374e-05 2.775e-05 0.00% Castro::expand_state() 10 1.963e-05 2.355e-05 2.762e-05 0.00% Castro::post_timestep() 10 1.365e-05 1.83e-05 2.721e-05 0.00% Castro::post_init() 1 8.63e-06 1.054e-05 1.609e-05 0.00% Castro::computeNewDt() 9 8.019e-06 9.384e-06 1.264e-05 0.00% Amr::InitializeInit() 1 3.148e-06 5.313e-06 7.26e-06 0.00% Castro::computeInitialDt() 2 3.642e-06 4.243e-06 5.123e-06 0.00% Amr::init() 1 1.957e-06 2.489e-06 3.213e-06 0.00% Amr::initialInit() 1 1.682e-06 1.977e-06 2.386e-06 0.00% Other 261 0.01741 0.0192 0.02012 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.526 3.526 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 93.73% Amr::timeStep() 10 3.292 3.293 3.294 93.41% Castro::advance() 10 3.276 3.277 3.278 92.95% Castro::subcycle_advance_ctu() 10 3.192 3.201 3.206 90.92% Castro::do_advance_ctu() 10 3.192 3.201 3.206 90.92% Castro::construct_ctu_hydro_source() 10 2.458 2.46 2.464 69.87% Gravity::make_radial_gravity() 21 0.3102 0.318 0.3251 9.22% Gravity::get_new_grav_vector() 11 0.2172 0.2185 0.2202 6.24% Amr::init() 1 0.2086 0.2088 0.2088 5.92% AmrLevel::FillPatch() 41 0.1851 0.1978 0.2076 5.89% Castro::construct_new_gravity() 10 0.1947 0.1955 0.1968 5.58% Amr::initialInit() 1 0.1939 0.1942 0.1943 5.51% Castro::construct_old_gravity() 10 0.1808 0.184 0.1887 5.35% Gravity::get_old_grav_vector() 10 0.1801 0.1833 0.1875 5.32% FillPatchIterator::Initialize 41 0.1564 0.165 0.1731 4.91% Castro::initialize_do_advance() 10 0.1505 0.1649 0.1709 4.85% Amr::InitializeInit() 1 0.07962 0.1201 0.1673 4.74% Amr::defBaseLevel() 1 0.07961 0.1201 0.1673 4.74% check_for_negative_density() 10 0.04975 0.07547 0.1646 4.67% Castro::initData() 1 0.06096 0.101 0.1478 4.19% FillPatchIterator::FillFromLevel0() 41 0.113 0.1199 0.1255 3.56% FillPatchSingleLevel 41 0.1129 0.1198 0.1254 3.56% Castro::expand_state() 10 0.1011 0.1115 0.1179 3.34% Castro::estTimeStep() 21 0.0231 0.07858 0.1159 3.29% Castro::clean_state() 62 0.1122 0.1142 0.1156 3.28% Amr::FinalizeInit() 1 0.027 0.07407 0.1147 3.25% Castro::do_old_sources() 10 0.08913 0.09252 0.09574 2.72% FabArray::ParallelCopy() 41 0.08044 0.08883 0.0944 2.68% Castro::computeInitialDt() 2 0.002414 0.04955 0.09009 2.55% amrex::Copy() 193 0.07569 0.07996 0.08648 2.45% FabArray::setVal() 143 0.06444 0.07321 0.0836 2.37% Castro::initialize_advance() 10 0.0674 0.07262 0.08137 2.31% Castro::do_new_sources() 10 0.06205 0.06699 0.07523 2.13% Castro::computeTemp() 63 0.06543 0.06685 0.06766 1.92% FabArray::ParallelCopy_finish() 41 0.0402 0.04861 0.05415 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04601 0.04715 0.04798 1.36% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04685 0.04767 1.35% Castro::normalize_species() 62 0.04081 0.04218 0.04343 1.23% FabArray::ParallelCopy_nowait() 41 0.03841 0.04014 0.04166 1.18% Castro::construct_new_source() 50 0.02952 0.03125 0.03356 0.95% StateDataPhysBCFunct::() 41 0.02812 0.03086 0.03301 0.94% StateData::FillBoundary(geom) 41 0.02803 0.03076 0.0329 0.93% Gravity::interpolate_monopole_grav() 21 0.02743 0.02907 0.02982 0.85% Castro::construct_new_gravity_source() 10 0.02347 0.0251 0.02744 0.78% Castro::finalize_do_advance() 10 0.0128 0.02118 0.02669 0.76% Castro::post_init() 1 0.02382 0.0241 0.02419 0.69% Amr::writePlotFile() 2 0.02201 0.02208 0.02229 0.63% Castro::post_timestep() 10 0.01528 0.0156 0.01596 0.45% Castro::apply_source_to_state() 20 0.01149 0.01261 0.0144 0.41% FabArray::Saxpy() 20 0.01145 0.01257 0.01436 0.41% FabArray::setDomainBndry() 41 0.009347 0.01231 0.01378 0.39% Castro::Castro() 1 0.01199 0.01261 0.01301 0.37% VisMF::Write(FabArray) 2 0.008814 0.009238 0.0115 0.33% Castro::check_for_nan() 20 0.009858 0.01063 0.01136 0.32% MultiFab::contains_nan() 20 0.009839 0.01061 0.01133 0.32% Castro::construct_old_source() 50 0.007982 0.009488 0.01011 0.29% Castro::construct_old_gravity_source() 10 0.007926 0.009417 0.01004 0.28% Castro::computeNewDt() 9 0.009016 0.009033 0.009046 0.26% Castro::initMFs() 1 0.007529 0.007715 0.00786 0.22% Other 261 0.02807 0.03065 0.03266 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 42 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-24-gb752027c1aeb) finalized