Initializing AMReX (24.04-24-gb752027c1aeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-24-gb752027c1aeb) initialized Starting run at 05:21:35 UTC on 2024-04-24. Successfully read inputs file ... Castro git describe: 24.04-19-g9935adf51 AMReX git describe: 24.04-24-gb752027c1 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013893611 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352547347 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335399033 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331718395 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.347451958 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.346393376 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.323144753 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.325237248 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.325073548 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.324331531 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.325834726 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007968755 seconds Ending run at 05:21:39 UTC on 2024-04-24. Run time = 3.552441458 Run time without initialization = 3.349687779 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.552 ... 3.552 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1948 2.3612 2.4439 68.79% Gravity::make_radial_gravity() 21 0.2955 0.3098 0.3366 9.48% check_for_negative_density() 10 0.01337 0.1002 0.2724 7.67% Castro::initData() 1 0.05505 0.09663 0.1341 3.77% Castro::estTimeStep() 21 0.03339 0.0739 0.1124 3.16% FabArray::ParallelCopy_finish() 41 0.04871 0.06228 0.1095 3.08% amrex::Copy() 193 0.05144 0.07609 0.08857 2.49% FabArray::setVal() 143 0.05886 0.06696 0.07193 2.02% Castro::reset_internal_energy(Fab) 1008 0.04322 0.04756 0.05026 1.41% Castro::normalize_species() 62 0.0412 0.04362 0.04977 1.40% FabArray::ParallelCopy_nowait() 41 0.02826 0.03901 0.04408 1.24% FillPatchIterator::Initialize 41 0.02566 0.03229 0.0365 1.03% StateData::FillBoundary(geom) 41 0.02619 0.03083 0.03437 0.97% Gravity::interpolate_monopole_grav() 21 0.02845 0.0296 0.03046 0.86% Castro::construct_new_gravity_source() 10 0.02267 0.02494 0.02662 0.75% Castro::computeTemp() 63 0.01791 0.02017 0.02171 0.61% Castro::initialize_do_advance() 10 0.01164 0.01668 0.01849 0.52% FabArray::setDomainBndry() 41 0.009059 0.01148 0.01354 0.38% FabArray::Saxpy() 20 0.009675 0.01235 0.01342 0.38% Amr::writePlotFile() 2 0.007739 0.01025 0.01251 0.35% MultiFab::contains_nan() 20 0.009739 0.01045 0.01203 0.34% VisMF::Write(FabArray) 2 0.008261 0.008904 0.01122 0.32% Castro::initialize_advance() 10 0.004846 0.009259 0.01071 0.30% Castro::initMFs() 1 0.006946 0.007787 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.005543 0.008731 0.00986 0.28% Castro::construct_new_source() 50 0.004872 0.006115 0.006744 0.19% Amr::coarseTimeStep() 10 0.001949 0.003486 0.005089 0.14% main() 1 0.003446 0.003663 0.003926 0.11% Gravity::get_new_grav_vector() 11 0.002481 0.003262 0.003712 0.10% Gravity::get_old_grav_vector() 10 0.001406 0.002077 0.002894 0.08% Castro::finalize_do_advance() 10 0.0004019 0.0009341 0.001195 0.03% AmrLevel::FillPatch() 41 0.0006257 0.0007554 0.0008268 0.02% Amr::timeStep() 10 0.0001702 0.0002355 0.0004487 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002784 0.0003006 0.0003461 0.01% Castro::do_advance_ctu() 10 0.0001286 0.0001735 0.0001977 0.01% Castro::clean_state() 62 0.0001452 0.0001557 0.0001722 0.00% FillPatchIterator::FillFromLevel0() 41 9.681e-05 0.0001117 0.0001222 0.00% StateDataPhysBCFunct::() 41 9.252e-05 0.0001074 0.000116 0.00% Castro::Castro() 1 9.051e-05 9.946e-05 0.0001087 0.00% FabArray::ParallelCopy() 41 6.798e-05 8.702e-05 0.0001026 0.00% Castro::do_old_sources() 10 6.626e-05 8.752e-05 0.0001014 0.00% Castro::construct_old_source() 50 4.475e-05 7.476e-05 9.419e-05 0.00% FillPatchSingleLevel 41 6.315e-05 7.599e-05 8.376e-05 0.00% Amr::FinalizeInit() 1 3.76e-06 1.417e-05 8.246e-05 0.00% Amr::defBaseLevel() 1 4.2e-05 5.144e-05 7.121e-05 0.00% Castro::subcycle_advance_ctu() 10 4.006e-05 5.294e-05 6.55e-05 0.00% Castro::construct_old_gravity() 10 2.56e-05 4.081e-05 6.479e-05 0.00% Castro::do_new_sources() 10 4.167e-05 5.575e-05 6.438e-05 0.00% Castro::advance() 10 3.531e-05 4.623e-05 6.179e-05 0.00% Castro::apply_source_to_state() 20 2.859e-05 3.96e-05 4.584e-05 0.00% Castro::construct_new_gravity() 10 2.883e-05 3.545e-05 4.345e-05 0.00% Castro::expand_state() 10 1.828e-05 2.566e-05 3.117e-05 0.00% Castro::check_for_nan() 20 1.85e-05 2.173e-05 2.426e-05 0.00% Castro::post_timestep() 10 1.852e-05 1.999e-05 2.247e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.66e-06 1.355e-05 2.06e-05 0.00% Castro::post_init() 1 8.544e-06 1.06e-05 1.538e-05 0.00% Castro::computeNewDt() 9 8.843e-06 1.051e-05 1.26e-05 0.00% Amr::InitializeInit() 1 3.09e-06 4.627e-06 6.824e-06 0.00% Castro::computeInitialDt() 2 3.253e-06 3.627e-06 4.426e-06 0.00% Amr::init() 1 1.801e-06 2.332e-06 2.714e-06 0.00% Amr::initialInit() 1 1.41e-06 1.997e-06 2.652e-06 0.00% Other 260 0.01615 0.01897 0.02199 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.552 3.552 100.00% Amr::coarseTimeStep() 10 3.338 3.338 3.338 93.96% Amr::timeStep() 10 3.322 3.324 3.326 93.61% Castro::advance() 10 3.308 3.308 3.308 93.13% Castro::subcycle_advance_ctu() 10 3.233 3.236 3.247 91.40% Castro::do_advance_ctu() 10 3.232 3.236 3.247 91.40% Castro::construct_ctu_hydro_source() 10 2.479 2.483 2.488 70.03% Gravity::make_radial_gravity() 21 0.3122 0.3255 0.347 9.77% check_for_negative_density() 10 0.01337 0.1002 0.2724 7.67% Gravity::get_new_grav_vector() 11 0.2161 0.2183 0.2194 6.18% AmrLevel::FillPatch() 41 0.1923 0.2074 0.2193 6.17% Castro::construct_old_gravity() 10 0.1816 0.1926 0.2086 5.87% Gravity::get_old_grav_vector() 10 0.1806 0.1917 0.2076 5.84% Amr::init() 1 0.2019 0.2021 0.2022 5.69% FillPatchIterator::Initialize 41 0.1676 0.1764 0.1991 5.60% Castro::construct_new_gravity() 10 0.1918 0.1935 0.1944 5.47% Amr::initialInit() 1 0.1879 0.1881 0.1883 5.30% Castro::initialize_do_advance() 10 0.1555 0.1683 0.1776 5.00% FillPatchIterator::FillFromLevel0() 41 0.125 0.1326 0.1643 4.63% FillPatchSingleLevel 41 0.1249 0.1325 0.1643 4.62% Amr::InitializeInit() 1 0.07602 0.1193 0.1595 4.49% Amr::defBaseLevel() 1 0.07601 0.1193 0.1595 4.49% FabArray::ParallelCopy() 41 0.09125 0.1015 0.1379 3.88% Castro::initData() 1 0.05868 0.1007 0.1375 3.87% Castro::clean_state() 62 0.1071 0.1168 0.1259 3.55% Castro::expand_state() 10 0.1042 0.1157 0.1221 3.44% Castro::estTimeStep() 21 0.03339 0.0739 0.1124 3.16% Amr::FinalizeInit() 1 0.02854 0.06885 0.1123 3.16% FabArray::ParallelCopy_finish() 41 0.04871 0.06228 0.1095 3.08% Castro::do_old_sources() 10 0.09093 0.0953 0.09827 2.77% amrex::Copy() 193 0.05144 0.07609 0.08857 2.49% Castro::computeInitialDt() 2 0.002268 0.04266 0.08604 2.42% Castro::initialize_advance() 10 0.05682 0.06856 0.07202 2.03% FabArray::setVal() 143 0.05886 0.06696 0.07193 2.02% Castro::computeTemp() 63 0.06141 0.06804 0.07156 2.01% Castro::do_new_sources() 10 0.05889 0.06544 0.06955 1.96% Castro::reset_internal_energy(MultiFab) 63 0.0435 0.04786 0.05056 1.42% Castro::reset_internal_energy(Fab) 1008 0.04322 0.04756 0.05026 1.41% Castro::normalize_species() 62 0.0412 0.04362 0.04977 1.40% FabArray::ParallelCopy_nowait() 41 0.02835 0.03911 0.04418 1.24% StateDataPhysBCFunct::() 41 0.02628 0.03094 0.03448 0.97% StateData::FillBoundary(geom) 41 0.02619 0.03083 0.03437 0.97% Castro::construct_new_source() 50 0.02755 0.03106 0.03231 0.91% Castro::finalize_do_advance() 10 0.01828 0.02303 0.0305 0.86% Gravity::interpolate_monopole_grav() 21 0.02845 0.0296 0.03046 0.86% Castro::construct_new_gravity_source() 10 0.02267 0.02494 0.02662 0.75% Castro::post_init() 1 0.0251 0.02564 0.02596 0.73% Amr::writePlotFile() 2 0.02182 0.02198 0.02228 0.63% Castro::post_timestep() 10 0.01475 0.0159 0.01746 0.49% Castro::Castro() 1 0.01114 0.01198 0.01421 0.40% FabArray::setDomainBndry() 41 0.009059 0.01148 0.01354 0.38% Castro::apply_source_to_state() 20 0.009703 0.01238 0.01346 0.38% FabArray::Saxpy() 20 0.009675 0.01235 0.01342 0.38% Castro::check_for_nan() 20 0.009758 0.01048 0.01206 0.34% MultiFab::contains_nan() 20 0.009739 0.01045 0.01203 0.34% VisMF::Write(FabArray) 2 0.008261 0.008904 0.01122 0.32% Castro::initMFs() 1 0.006946 0.007787 0.01024 0.29% Castro::construct_old_source() 50 0.005588 0.008806 0.009942 0.28% Castro::construct_old_gravity_source() 10 0.005543 0.008731 0.00986 0.28% Castro::computeNewDt() 9 0.009132 0.009155 0.009173 0.26% AmrLevel::AmrLevel(dm) 1 0.005789 0.006333 0.007802 0.22% Other 260 0.02086 0.02438 0.02822 0.79% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-24-gb752027c1aeb) finalized