Initializing AMReX (24.04-25-gaba9891ec5ed)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-25-gaba9891ec5ed) initialized Starting run at 05:35:35 UTC on 2024-04-25. Successfully read inputs file ... Castro git describe: 24.04-19-g9935adf51 AMReX git describe: 24.04-25-gaba9891ec Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015865783 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355069203 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.356793323 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358210332 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.366735825 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330215039 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.309562464 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308523069 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309928274 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311353221 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310973924 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007471892 seconds Ending run at 05:35:38 UTC on 2024-04-25. Run time = 3.517749966 Run time without initialization = 3.329502285 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.517 ... 3.518 ... 3.518 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2332 2.3709 2.4078 68.45% Gravity::make_radial_gravity() 21 0.299 0.3049 0.3153 8.96% check_for_negative_density() 10 0.04928 0.08728 0.2278 6.48% Castro::initData() 1 0.05697 0.08726 0.12 3.41% Castro::estTimeStep() 21 0.03193 0.06147 0.08691 2.47% amrex::Copy() 193 0.0711 0.07873 0.08571 2.44% FabArray::setVal() 143 0.06473 0.07107 0.07904 2.25% FabArray::ParallelCopy_finish() 41 0.03948 0.0483 0.05606 1.59% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04696 0.0482 1.37% Castro::normalize_species() 62 0.04158 0.04233 0.04341 1.23% FabArray::ParallelCopy_nowait() 41 0.03754 0.03987 0.04095 1.16% FillPatchIterator::Initialize 41 0.02811 0.03266 0.03466 0.99% StateData::FillBoundary(geom) 41 0.02737 0.03063 0.03304 0.94% Gravity::interpolate_monopole_grav() 21 0.02768 0.02931 0.02996 0.85% Castro::construct_new_gravity_source() 10 0.02357 0.02482 0.02598 0.74% Castro::computeTemp() 63 0.01898 0.01962 0.02011 0.57% Castro::initialize_do_advance() 10 0.01423 0.01715 0.01936 0.55% FabArray::setDomainBndry() 41 0.008392 0.01192 0.01395 0.40% Castro::initialize_advance() 10 0.009669 0.01125 0.01317 0.37% FabArray::Saxpy() 20 0.0117 0.0124 0.01304 0.37% VisMF::Write(FabArray) 2 0.009027 0.009552 0.01218 0.35% Amr::writePlotFile() 2 0.008548 0.01082 0.01186 0.34% MultiFab::contains_nan() 20 0.01007 0.01046 0.01077 0.31% Castro::construct_old_gravity_source() 10 0.00756 0.009215 0.009828 0.28% Castro::initMFs() 1 0.006574 0.007143 0.007883 0.22% Castro::construct_new_source() 50 0.005783 0.006018 0.006098 0.17% Gravity::get_new_grav_vector() 11 0.00343 0.004245 0.005507 0.16% main() 1 0.003404 0.003659 0.00378 0.11% Amr::coarseTimeStep() 10 0.00196 0.002454 0.002778 0.08% Gravity::get_old_grav_vector() 10 0.001628 0.002029 0.002296 0.07% Castro::finalize_do_advance() 10 0.0004145 0.0009863 0.001424 0.04% AmrLevel::FillPatch() 41 0.0007855 0.000886 0.001045 0.03% Amr::timeStep() 10 0.000181 0.0002285 0.0004763 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.0003016 0.0003457 0.01% Castro::do_advance_ctu() 10 0.0001617 0.0001731 0.0001878 0.01% Castro::clean_state() 62 0.0001418 0.000157 0.0001726 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.0001077 0.0001251 0.00% StateDataPhysBCFunct::() 41 9.945e-05 0.0001075 0.0001138 0.00% Castro::do_old_sources() 10 8.931e-05 9.614e-05 0.0001097 0.00% Castro::Castro() 1 7.797e-05 9.124e-05 0.0001075 0.00% Amr::FinalizeInit() 1 4.701e-06 1.827e-05 0.0001056 0.00% FillPatchSingleLevel 41 7.259e-05 7.995e-05 0.0001 0.00% FabArray::ParallelCopy() 41 8.317e-05 8.831e-05 9.868e-05 0.00% Castro::construct_old_source() 50 6.912e-05 7.617e-05 8.627e-05 0.00% Castro::do_new_sources() 10 5.878e-05 6.273e-05 6.894e-05 0.00% Castro::subcycle_advance_ctu() 10 4.505e-05 5.196e-05 6.082e-05 0.00% Amr::defBaseLevel() 1 4.147e-05 5.025e-05 5.783e-05 0.00% Castro::advance() 10 4.232e-05 4.5e-05 5.071e-05 0.00% Castro::apply_source_to_state() 20 3.672e-05 4.18e-05 4.983e-05 0.00% Castro::construct_old_gravity() 10 3.883e-05 4.219e-05 4.555e-05 0.00% Castro::construct_new_gravity() 10 3.771e-05 3.969e-05 4.148e-05 0.00% Castro::expand_state() 10 2.363e-05 2.584e-05 3.297e-05 0.00% Castro::check_for_nan() 20 1.945e-05 2.233e-05 2.543e-05 0.00% Castro::post_timestep() 10 1.416e-05 1.563e-05 1.659e-05 0.00% Castro::post_init() 1 8.761e-06 9.827e-06 1.294e-05 0.00% Castro::computeNewDt() 9 8.921e-06 1.059e-05 1.294e-05 0.00% Amr::initialInit() 1 1.574e-06 2.831e-06 9.628e-06 0.00% Amr::InitializeInit() 1 3.017e-06 4.44e-06 6.319e-06 0.00% Castro::computeInitialDt() 2 3.435e-06 4.231e-06 4.497e-06 0.00% Amr::init() 1 1.707e-06 2.288e-06 2.997e-06 0.00% Other 261 0.01665 0.01936 0.02131 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.517 3.518 3.518 100.00% Amr::coarseTimeStep() 10 3.318 3.318 3.318 94.33% Amr::timeStep() 10 3.305 3.305 3.306 93.97% Castro::advance() 10 3.289 3.289 3.29 93.52% Castro::subcycle_advance_ctu() 10 3.207 3.214 3.218 91.48% Castro::do_advance_ctu() 10 3.207 3.214 3.218 91.48% Castro::construct_ctu_hydro_source() 10 2.477 2.479 2.484 70.60% Gravity::make_radial_gravity() 21 0.3156 0.3216 0.3303 9.39% check_for_negative_density() 10 0.04928 0.08728 0.2278 6.48% Gravity::get_new_grav_vector() 11 0.2138 0.2162 0.2171 6.17% AmrLevel::FillPatch() 41 0.1839 0.1958 0.2036 5.79% Castro::construct_old_gravity() 10 0.1861 0.1896 0.1975 5.62% Gravity::get_old_grav_vector() 10 0.1855 0.189 0.1969 5.60% Castro::construct_new_gravity() 10 0.1888 0.1903 0.191 5.43% Amr::init() 1 0.187 0.1876 0.1877 5.34% Amr::initialInit() 1 0.1714 0.1719 0.1726 4.91% Castro::initialize_do_advance() 10 0.1489 0.164 0.1706 4.85% FillPatchIterator::Initialize 41 0.158 0.1639 0.1701 4.84% Amr::InitializeInit() 1 0.08028 0.1091 0.1422 4.04% Amr::defBaseLevel() 1 0.08027 0.1091 0.1422 4.04% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1193 0.1236 3.51% Castro::initData() 1 0.06107 0.09129 0.1236 3.51% FillPatchSingleLevel 41 0.1127 0.1192 0.1235 3.51% Castro::expand_state() 10 0.0991 0.1108 0.1174 3.34% Castro::clean_state() 62 0.1119 0.1144 0.1167 3.32% Castro::do_old_sources() 10 0.08915 0.09157 0.09409 2.67% FabArray::ParallelCopy() 41 0.07974 0.08835 0.0938 2.67% Amr::FinalizeInit() 1 0.02943 0.06279 0.09229 2.62% Castro::estTimeStep() 21 0.03193 0.06147 0.08691 2.47% amrex::Copy() 193 0.0711 0.07873 0.08571 2.44% FabArray::setVal() 143 0.06473 0.07107 0.07904 2.25% Castro::initialize_advance() 10 0.06786 0.07199 0.07828 2.23% Castro::do_new_sources() 10 0.06202 0.0658 0.07008 1.99% Castro::computeTemp() 63 0.06495 0.06688 0.06866 1.95% Castro::computeInitialDt() 2 0.00243 0.03542 0.06436 1.83% FabArray::ParallelCopy_finish() 41 0.03948 0.0483 0.05606 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04598 0.04726 0.04855 1.38% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04696 0.0482 1.37% Castro::normalize_species() 62 0.04158 0.04233 0.04341 1.23% FabArray::ParallelCopy_nowait() 41 0.03764 0.03997 0.04105 1.17% StateDataPhysBCFunct::() 41 0.02748 0.03074 0.03315 0.94% StateData::FillBoundary(geom) 41 0.02737 0.03063 0.03304 0.94% Castro::construct_new_source() 50 0.02967 0.03084 0.03198 0.91% Gravity::interpolate_monopole_grav() 21 0.02768 0.02931 0.02996 0.85% Castro::post_init() 1 0.0265 0.02702 0.02751 0.78% Castro::construct_new_gravity_source() 10 0.02357 0.02482 0.02598 0.74% Amr::writePlotFile() 2 0.02269 0.02326 0.02382 0.68% Castro::finalize_do_advance() 10 0.01329 0.01781 0.02177 0.62% Castro::post_timestep() 10 0.01521 0.01565 0.01598 0.45% FabArray::setDomainBndry() 41 0.008392 0.01192 0.01395 0.40% Castro::apply_source_to_state() 20 0.01174 0.01244 0.01309 0.37% FabArray::Saxpy() 20 0.0117 0.0124 0.01304 0.37% VisMF::Write(FabArray) 2 0.009027 0.009552 0.01218 0.35% Castro::Castro() 1 0.01016 0.01113 0.01191 0.34% Castro::check_for_nan() 20 0.01009 0.01048 0.0108 0.31% MultiFab::contains_nan() 20 0.01007 0.01046 0.01077 0.31% Castro::construct_old_source() 50 0.00763 0.009291 0.009909 0.28% Castro::construct_old_gravity_source() 10 0.00756 0.009215 0.009828 0.28% Castro::computeNewDt() 9 0.009231 0.009245 0.009264 0.26% Castro::initMFs() 1 0.006574 0.007143 0.007883 0.22% Other 261 0.02676 0.03101 0.0346 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-25-gaba9891ec5ed) finalized