Initializing AMReX (24.04-27-gd857968968ae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-27-gd857968968ae) initialized Starting run at 19:56:20 UTC on 2024-04-26. Successfully read inputs file ... Castro git describe: 24.04-18-g6053b3e6c AMReX git describe: 24.04-27-gd85796896 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014113066 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346708082 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352274185 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327484097 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.347986061 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359067083 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312971849 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308111466 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312750849 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311412657 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313395608 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007369581 seconds Ending run at 19:56:24 UTC on 2024-04-26. Run time = 3.503053866 Run time without initialization = 3.304342054 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.502 ... 3.503 ... 3.503 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2902 2.3270 2.3832 68.03% Gravity::make_radial_gravity() 21 0.2906 0.2975 0.3117 8.90% check_for_negative_density() 10 0.05251 0.1122 0.1503 4.29% Castro::initData() 1 0.05689 0.09397 0.1336 3.81% Castro::estTimeStep() 21 0.02499 0.07178 0.1125 3.21% FabArray::ParallelCopy_finish() 41 0.03748 0.05812 0.09973 2.85% amrex::Copy() 193 0.06586 0.0758 0.08351 2.38% FabArray::setVal() 143 0.05102 0.06867 0.08065 2.30% Castro::reset_internal_energy(Fab) 1008 0.04241 0.04524 0.04701 1.34% Castro::normalize_species() 62 0.04124 0.04229 0.04353 1.24% FabArray::ParallelCopy_nowait() 41 0.03237 0.03834 0.04012 1.15% FillPatchIterator::Initialize 41 0.02672 0.03199 0.03466 0.99% StateData::FillBoundary(geom) 41 0.02933 0.03099 0.03209 0.92% Gravity::interpolate_monopole_grav() 21 0.0278 0.02938 0.03037 0.87% Castro::construct_new_gravity_source() 10 0.0223 0.02529 0.02826 0.81% Castro::initialize_do_advance() 10 0.01157 0.01676 0.02013 0.57% Castro::computeTemp() 63 0.01766 0.01881 0.01963 0.56% FabArray::Saxpy() 20 0.01007 0.0123 0.01299 0.37% Castro::initialize_advance() 10 0.00538 0.009821 0.01225 0.35% Amr::writePlotFile() 2 0.007581 0.01005 0.01173 0.33% VisMF::Write(FabArray) 2 0.008572 0.009119 0.01147 0.33% FabArray::setDomainBndry() 41 0.008196 0.01026 0.01134 0.32% MultiFab::contains_nan() 20 0.008995 0.009924 0.01077 0.31% Castro::construct_old_gravity_source() 10 0.006559 0.008785 0.009439 0.27% Castro::initMFs() 1 0.006611 0.007321 0.007725 0.22% Castro::construct_new_source() 50 0.00537 0.005802 0.006029 0.17% main() 1 0.002754 0.003545 0.004073 0.12% Gravity::get_new_grav_vector() 11 0.002827 0.003358 0.003713 0.11% Amr::coarseTimeStep() 10 0.001464 0.002181 0.003526 0.10% Gravity::get_old_grav_vector() 10 0.001559 0.001997 0.002337 0.07% Castro::finalize_do_advance() 10 0.0003803 0.0009309 0.001235 0.04% AmrLevel::FillPatch() 41 0.0006463 0.001072 0.001173 0.03% Amr::timeStep() 10 0.0001655 0.0002168 0.0004555 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002904 0.0003004 0.0003054 0.01% Castro::do_advance_ctu() 10 0.0001408 0.0001676 0.0002002 0.01% Castro::clean_state() 62 0.0001364 0.0001552 0.0001696 0.00% StateDataPhysBCFunct::() 41 9.557e-05 0.0001127 0.0001339 0.00% FillPatchIterator::FillFromLevel0() 41 9.373e-05 0.0001089 0.000124 0.00% Castro::Castro() 1 8.277e-05 0.000105 0.0001127 0.00% Castro::do_old_sources() 10 6.736e-05 8.611e-05 0.0001001 0.00% FabArray::ParallelCopy() 41 6.947e-05 8.02e-05 9.049e-05 0.00% Amr::FinalizeInit() 1 3.764e-06 1.508e-05 9.022e-05 0.00% Castro::construct_old_source() 50 4.861e-05 7.29e-05 8.686e-05 0.00% FillPatchSingleLevel 41 6.621e-05 7.445e-05 8.582e-05 0.00% Castro::do_new_sources() 10 5.322e-05 6.158e-05 6.853e-05 0.00% Castro::subcycle_advance_ctu() 10 3.801e-05 4.739e-05 6.144e-05 0.00% Castro::advance() 10 3.804e-05 4.788e-05 5.906e-05 0.00% Amr::defBaseLevel() 1 4.811e-05 5.163e-05 5.585e-05 0.00% Castro::construct_new_gravity() 10 2.817e-05 3.385e-05 5.051e-05 0.00% Castro::apply_source_to_state() 20 3.221e-05 4.141e-05 4.582e-05 0.00% Castro::construct_old_gravity() 10 3.134e-05 3.7e-05 4.314e-05 0.00% Castro::check_for_nan() 20 1.943e-05 2.301e-05 2.958e-05 0.00% Castro::expand_state() 10 2.097e-05 2.34e-05 2.784e-05 0.00% Castro::post_timestep() 10 1.459e-05 1.749e-05 2.041e-05 0.00% Castro::post_init() 1 7.911e-06 1.127e-05 1.84e-05 0.00% Castro::computeNewDt() 9 7.532e-06 9.572e-06 1.106e-05 0.00% Amr::InitializeInit() 1 2.894e-06 3.615e-06 6.047e-06 0.00% Castro::computeInitialDt() 2 3.044e-06 3.892e-06 4.327e-06 0.00% Amr::init() 1 1.697e-06 2.044e-06 2.429e-06 0.00% Amr::initialInit() 1 1.504e-06 1.708e-06 2.05e-06 0.00% Other 261 0.01794 0.02007 0.02138 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.502 3.503 3.503 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 94.00% Amr::timeStep() 10 3.279 3.281 3.281 93.67% Castro::advance() 10 3.264 3.265 3.266 93.22% Castro::subcycle_advance_ctu() 10 3.183 3.192 3.208 91.57% Castro::do_advance_ctu() 10 3.183 3.192 3.208 91.57% Castro::construct_ctu_hydro_source() 10 2.456 2.459 2.463 70.32% Gravity::make_radial_gravity() 21 0.307 0.3132 0.325 9.28% AmrLevel::FillPatch() 41 0.1869 0.2013 0.226 6.45% Gravity::get_new_grav_vector() 11 0.2144 0.2156 0.2167 6.19% Amr::init() 1 0.198 0.1981 0.1982 5.66% FillPatchIterator::Initialize 41 0.154 0.1702 0.1981 5.66% Castro::construct_new_gravity() 10 0.1894 0.1906 0.1918 5.48% Castro::construct_old_gravity() 10 0.1772 0.1818 0.1917 5.47% Gravity::get_old_grav_vector() 10 0.1764 0.181 0.1911 5.46% Amr::initialInit() 1 0.1835 0.1838 0.184 5.25% Castro::initialize_do_advance() 10 0.1551 0.1646 0.1712 4.89% FillPatchIterator::FillFromLevel0() 41 0.1083 0.1279 0.1632 4.66% FillPatchSingleLevel 41 0.1081 0.1278 0.1631 4.66% Amr::InitializeInit() 1 0.07932 0.1158 0.1552 4.43% Amr::defBaseLevel() 1 0.07931 0.1158 0.1552 4.43% check_for_negative_density() 10 0.05251 0.1122 0.1503 4.29% Castro::initData() 1 0.06057 0.09783 0.1376 3.93% FabArray::ParallelCopy() 41 0.07637 0.09663 0.1322 3.77% Castro::expand_state() 10 0.1013 0.1123 0.1251 3.57% Castro::clean_state() 62 0.1098 0.1133 0.116 3.31% Castro::estTimeStep() 21 0.02499 0.07178 0.1125 3.21% Amr::FinalizeInit() 1 0.02844 0.06798 0.1045 2.98% FabArray::ParallelCopy_finish() 41 0.03748 0.05812 0.09973 2.85% Castro::do_old_sources() 10 0.09009 0.09273 0.0989 2.82% amrex::Copy() 193 0.06586 0.0758 0.08351 2.38% FabArray::setVal() 143 0.05102 0.06867 0.08065 2.30% Castro::initialize_advance() 10 0.05287 0.06922 0.07858 2.24% Castro::computeInitialDt() 2 0.002259 0.04165 0.07812 2.23% Castro::do_new_sources() 10 0.05536 0.06548 0.07463 2.13% Castro::computeTemp() 63 0.06052 0.06436 0.06675 1.91% Castro::reset_internal_energy(MultiFab) 63 0.0427 0.04554 0.04732 1.35% Castro::reset_internal_energy(Fab) 1008 0.04241 0.04524 0.04701 1.34% Castro::normalize_species() 62 0.04124 0.04229 0.04353 1.24% FabArray::ParallelCopy_nowait() 41 0.03245 0.03843 0.0402 1.15% Castro::construct_new_source() 50 0.02767 0.03109 0.03429 0.98% StateDataPhysBCFunct::() 41 0.02945 0.0311 0.03221 0.92% StateData::FillBoundary(geom) 41 0.02933 0.03099 0.03209 0.92% Castro::finalize_do_advance() 10 0.01247 0.02201 0.03173 0.91% Gravity::interpolate_monopole_grav() 21 0.0278 0.02938 0.03037 0.87% Castro::construct_new_gravity_source() 10 0.0223 0.02529 0.02826 0.81% Castro::post_init() 1 0.02576 0.02592 0.02609 0.74% Amr::writePlotFile() 2 0.02163 0.02176 0.02212 0.63% Castro::post_timestep() 10 0.01488 0.01564 0.01638 0.47% Castro::apply_source_to_state() 20 0.0101 0.01234 0.01304 0.37% FabArray::Saxpy() 20 0.01007 0.0123 0.01299 0.37% Castro::Castro() 1 0.009623 0.01167 0.0123 0.35% VisMF::Write(FabArray) 2 0.008572 0.009119 0.01147 0.33% FabArray::setDomainBndry() 41 0.008196 0.01026 0.01134 0.32% Castro::check_for_nan() 20 0.00902 0.009947 0.01079 0.31% MultiFab::contains_nan() 20 0.008995 0.009924 0.01077 0.31% Castro::construct_old_source() 50 0.006608 0.008858 0.009519 0.27% Castro::construct_old_gravity_source() 10 0.006559 0.008785 0.009439 0.27% Castro::computeNewDt() 9 0.009039 0.009066 0.009088 0.26% Castro::initMFs() 1 0.006611 0.007321 0.007725 0.22% Other 261 0.02801 0.03139 0.03394 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-27-gd857968968ae) finalized