Initializing AMReX (24.04-26-gb029e4f335b0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-26-gb029e4f335b0) initialized Starting run at 05:36:13 UTC on 2024-04-26. Successfully read inputs file ... Castro git describe: 24.04-19-g9935adf51 AMReX git describe: 24.04-26-gb029e4f33 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014241554 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368812697 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344410906 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.389912918 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.383583123 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331534828 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.310820712 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311107341 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310746347 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312248266 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311928006 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00756394 seconds Ending run at 05:36:17 UTC on 2024-04-26. Run time = 3.584954319 Run time without initialization = 3.387559343 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.584 ... 3.584 ... 3.585 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2645 2.3758 2.4631 68.70% Gravity::make_radial_gravity() 21 0.2908 0.2991 0.3156 8.80% check_for_negative_density() 10 0.06444 0.155 0.2705 7.54% Castro::initData() 1 0.04723 0.09222 0.1351 3.77% Castro::estTimeStep() 21 0.02485 0.07363 0.1236 3.45% FabArray::ParallelCopy_finish() 41 0.03774 0.04923 0.08515 2.38% amrex::Copy() 193 0.0587 0.07672 0.08428 2.35% FabArray::setVal() 143 0.0588 0.06533 0.073 2.04% Castro::reset_internal_energy(Fab) 1008 0.04523 0.04679 0.04922 1.37% Castro::normalize_species() 62 0.04105 0.042 0.04311 1.20% FabArray::ParallelCopy_nowait() 41 0.03292 0.03926 0.04161 1.16% FillPatchIterator::Initialize 41 0.02725 0.03204 0.03414 0.95% StateData::FillBoundary(geom) 41 0.02739 0.03033 0.03311 0.92% Gravity::interpolate_monopole_grav() 21 0.02745 0.02909 0.03032 0.85% Castro::construct_new_gravity_source() 10 0.02258 0.0239 0.02617 0.73% Castro::computeTemp() 63 0.01846 0.01952 0.02002 0.56% Castro::initialize_do_advance() 10 0.01245 0.01659 0.01965 0.55% FabArray::setDomainBndry() 41 0.008689 0.01211 0.01408 0.39% FabArray::Saxpy() 20 0.0101 0.01164 0.01248 0.35% VisMF::Write(FabArray) 2 0.008769 0.009381 0.01246 0.35% Castro::initialize_advance() 10 0.005581 0.009574 0.0123 0.34% MultiFab::contains_nan() 20 0.009677 0.01043 0.01124 0.31% Amr::writePlotFile() 2 0.007502 0.009669 0.0101 0.28% Castro::construct_old_gravity_source() 10 0.006481 0.00873 0.009326 0.26% Castro::initMFs() 1 0.006412 0.007143 0.007435 0.21% Castro::construct_new_source() 50 0.005186 0.005778 0.00595 0.17% Gravity::get_new_grav_vector() 11 0.003232 0.003761 0.005125 0.14% main() 1 0.003423 0.003681 0.004249 0.12% Gravity::get_old_grav_vector() 10 0.001462 0.002027 0.002464 0.07% Amr::coarseTimeStep() 10 0.0009524 0.001791 0.002447 0.07% AmrLevel::FillPatch() 41 0.0007539 0.0009415 0.001145 0.03% Castro::finalize_do_advance() 10 0.0004271 0.0009012 0.001071 0.03% Amr::timeStep() 10 0.0001748 0.0002112 0.0003867 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002949 0.0003132 0.01% Castro::do_advance_ctu() 10 0.0001557 0.0001797 0.0002189 0.01% Castro::clean_state() 62 0.0001342 0.0001589 0.00019 0.01% FillPatchIterator::FillFromLevel0() 41 9.661e-05 0.0001126 0.000138 0.00% StateDataPhysBCFunct::() 41 9.065e-05 0.0001038 0.0001092 0.00% Castro::do_old_sources() 10 8.032e-05 9.239e-05 0.000105 0.00% Castro::Castro() 1 7.499e-05 9.212e-05 0.0001009 0.00% FabArray::ParallelCopy() 41 7.713e-05 8.334e-05 9.837e-05 0.00% FillPatchSingleLevel 41 7.346e-05 7.929e-05 9.462e-05 0.00% Amr::FinalizeInit() 1 3.436e-06 1.478e-05 8.951e-05 0.00% Castro::construct_old_source() 50 5.77e-05 7.581e-05 8.71e-05 0.00% Castro::do_new_sources() 10 4.766e-05 5.74e-05 6.659e-05 0.00% Castro::subcycle_advance_ctu() 10 4.075e-05 4.999e-05 5.954e-05 0.00% Amr::defBaseLevel() 1 4.168e-05 4.587e-05 5.904e-05 0.00% Castro::construct_old_gravity() 10 3.398e-05 4.179e-05 5.839e-05 0.00% Castro::advance() 10 3.915e-05 4.513e-05 5.083e-05 0.00% Castro::apply_source_to_state() 20 3.698e-05 4.064e-05 4.779e-05 0.00% Castro::construct_new_gravity() 10 3.413e-05 3.688e-05 4.201e-05 0.00% Castro::check_for_nan() 20 2.14e-05 2.436e-05 2.948e-05 0.00% Castro::expand_state() 10 2.155e-05 2.486e-05 2.946e-05 0.00% Castro::post_timestep() 10 1.533e-05 1.623e-05 1.765e-05 0.00% Castro::post_init() 1 8.827e-06 1.048e-05 1.303e-05 0.00% Castro::computeNewDt() 9 8.206e-06 9.631e-06 1.184e-05 0.00% Amr::init() 1 1.697e-06 2.988e-06 7.506e-06 0.00% Amr::InitializeInit() 1 2.93e-06 3.683e-06 6.952e-06 0.00% Castro::computeInitialDt() 2 3.259e-06 3.87e-06 4.607e-06 0.00% Amr::initialInit() 1 1.571e-06 1.746e-06 2.139e-06 0.00% Other 261 0.01483 0.01833 0.01981 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.584 3.584 3.585 100.00% Amr::coarseTimeStep() 10 3.376 3.376 3.376 94.17% Amr::timeStep() 10 3.363 3.364 3.365 93.85% Castro::advance() 10 3.348 3.348 3.349 93.40% Castro::subcycle_advance_ctu() 10 3.272 3.278 3.288 91.73% Castro::do_advance_ctu() 10 3.272 3.278 3.288 91.72% Castro::construct_ctu_hydro_source() 10 2.55 2.552 2.556 71.30% Gravity::make_radial_gravity() 21 0.3062 0.3152 0.3283 9.16% check_for_negative_density() 10 0.06444 0.155 0.2705 7.54% Gravity::get_new_grav_vector() 11 0.2106 0.212 0.2131 5.94% AmrLevel::FillPatch() 41 0.1838 0.1953 0.2048 5.71% Castro::construct_old_gravity() 10 0.1803 0.1856 0.1974 5.51% Gravity::get_old_grav_vector() 10 0.1797 0.185 0.1969 5.49% Amr::init() 1 0.1966 0.1968 0.1968 5.49% Castro::construct_new_gravity() 10 0.1888 0.1896 0.1904 5.31% Amr::initialInit() 1 0.1822 0.1827 0.1828 5.10% FillPatchIterator::Initialize 41 0.1528 0.1634 0.1819 5.07% Castro::initialize_do_advance() 10 0.1561 0.1632 0.1683 4.69% Amr::InitializeInit() 1 0.06615 0.1132 0.1566 4.37% Amr::defBaseLevel() 1 0.06615 0.1132 0.1566 4.37% FillPatchIterator::FillFromLevel0() 41 0.1064 0.1193 0.146 4.07% FillPatchSingleLevel 41 0.1062 0.1192 0.1459 4.07% Castro::initData() 1 0.05098 0.09598 0.1388 3.87% Castro::estTimeStep() 21 0.02485 0.07363 0.1236 3.45% FabArray::ParallelCopy() 41 0.07648 0.08867 0.1183 3.30% Castro::clean_state() 62 0.111 0.1137 0.1167 3.26% Amr::FinalizeInit() 1 0.02618 0.06947 0.1166 3.25% Castro::expand_state() 10 0.1029 0.1108 0.1165 3.25% Castro::computeInitialDt() 2 0.002213 0.04551 0.09264 2.58% Castro::do_old_sources() 10 0.08793 0.09013 0.09127 2.55% FabArray::ParallelCopy_finish() 41 0.03774 0.04923 0.08515 2.38% amrex::Copy() 193 0.0587 0.07672 0.08428 2.35% FabArray::setVal() 143 0.0588 0.06533 0.073 2.04% Castro::initialize_advance() 10 0.05577 0.06642 0.07253 2.02% Castro::do_new_sources() 10 0.05925 0.06289 0.06995 1.95% Castro::computeTemp() 63 0.06398 0.06661 0.06954 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04552 0.04709 0.04952 1.38% Castro::reset_internal_energy(Fab) 1008 0.04523 0.04679 0.04922 1.37% Castro::normalize_species() 62 0.04105 0.042 0.04311 1.20% FabArray::ParallelCopy_nowait() 41 0.03303 0.03935 0.0417 1.16% StateDataPhysBCFunct::() 41 0.02749 0.03044 0.03322 0.93% StateData::FillBoundary(geom) 41 0.02739 0.03033 0.03311 0.92% Castro::construct_new_source() 50 0.02787 0.02968 0.03197 0.89% Gravity::interpolate_monopole_grav() 21 0.02745 0.02909 0.03032 0.85% Castro::construct_new_gravity_source() 10 0.02258 0.0239 0.02617 0.73% Castro::finalize_do_advance() 10 0.01177 0.01987 0.02419 0.67% Castro::post_init() 1 0.02297 0.02349 0.02368 0.66% Amr::writePlotFile() 2 0.02161 0.02172 0.02208 0.62% Castro::post_timestep() 10 0.01523 0.01554 0.01593 0.44% FabArray::setDomainBndry() 41 0.008689 0.01211 0.01408 0.39% Castro::apply_source_to_state() 20 0.01014 0.01168 0.01252 0.35% FabArray::Saxpy() 20 0.0101 0.01164 0.01248 0.35% VisMF::Write(FabArray) 2 0.008769 0.009381 0.01246 0.35% Castro::Castro() 1 0.009537 0.01112 0.01187 0.33% Castro::check_for_nan() 20 0.009698 0.01045 0.01126 0.31% MultiFab::contains_nan() 20 0.009677 0.01043 0.01124 0.31% Castro::construct_old_source() 50 0.006538 0.008806 0.009404 0.26% Castro::construct_old_gravity_source() 10 0.006481 0.00873 0.009326 0.26% Castro::computeNewDt() 9 0.009147 0.00916 0.009178 0.26% Castro::initMFs() 1 0.006412 0.007143 0.007435 0.21% Other 261 0.02452 0.02928 0.03166 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 38 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-26-gb029e4f335b0) finalized