Initializing AMReX (24.04-27-gd857968968ae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-27-gd857968968ae) initialized Starting run at 05:28:09 UTC on 2024-04-29. Successfully read inputs file ... Castro git describe: 24.04-24-gdda3ea60d AMReX git describe: 24.04-27-gd85796896 Microphysics git describe: 24.04-9-g4ad225b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.074764304 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359563978 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352363576 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331633005 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.372637429 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328830581 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.308066425 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.307851106 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307134369 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308889316 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311044135 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007468076 seconds Ending run at 05:28:13 UTC on 2024-04-29. Run time = 3.570970404 Run time without initialization = 3.300432911 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.57 ... 3.571 ... 3.571 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3009 2.3530 2.4102 67.49% Gravity::make_radial_gravity() 21 0.2863 0.2946 0.3044 8.52% check_for_negative_density() 10 0.02484 0.08508 0.1406 3.94% Castro::initData() 1 0.05301 0.09568 0.1381 3.87% Castro::estTimeStep() 21 0.03312 0.07663 0.1178 3.30% amrex::Copy() 193 0.07105 0.0795 0.08747 2.45% FabArray::setVal() 143 0.06255 0.07025 0.07719 2.16% Amr::writePlotFile() 2 0.0677 0.07009 0.07075 1.98% FabArray::ParallelCopy_finish() 41 0.0354 0.04625 0.05328 1.49% Castro::reset_internal_energy(Fab) 1008 0.04391 0.04718 0.04856 1.36% Castro::normalize_species() 62 0.04094 0.04139 0.04194 1.17% FabArray::ParallelCopy_nowait() 41 0.03903 0.04005 0.04127 1.16% FillPatchIterator::Initialize 41 0.02915 0.03294 0.0344 0.96% StateData::FillBoundary(geom) 41 0.02853 0.03063 0.03283 0.92% Gravity::interpolate_monopole_grav() 21 0.02725 0.02891 0.02981 0.83% Castro::construct_new_gravity_source() 10 0.0229 0.02475 0.02633 0.74% Castro::computeTemp() 63 0.01859 0.01965 0.02024 0.57% Castro::initialize_do_advance() 10 0.01565 0.01747 0.01893 0.53% FabArray::setDomainBndry() 41 0.009708 0.01213 0.01441 0.40% Castro::initialize_advance() 10 0.009801 0.01149 0.01317 0.37% FabArray::Saxpy() 20 0.01197 0.01247 0.01294 0.36% VisMF::Write(FabArray) 2 0.008823 0.009465 0.01193 0.33% MultiFab::contains_nan() 20 0.009689 0.01066 0.01158 0.32% Castro::initMFs() 1 0.006779 0.008453 0.01148 0.32% Castro::construct_old_gravity_source() 10 0.009065 0.009562 0.009782 0.27% StateData::define() 4 0.006004 0.007046 0.009723 0.27% Castro::construct_new_source() 50 0.005659 0.005993 0.00615 0.17% Gravity::get_new_grav_vector() 11 0.003427 0.003734 0.004293 0.12% main() 1 0.003333 0.003751 0.004196 0.12% Gravity::get_old_grav_vector() 10 0.001659 0.002129 0.002446 0.07% Amr::coarseTimeStep() 10 0.001353 0.001895 0.002409 0.07% Castro::finalize_do_advance() 10 0.00109 0.001271 0.00177 0.05% AmrLevel::FillPatch() 41 0.0009528 0.001068 0.001182 0.03% Amr::timeStep() 10 0.0001595 0.0002187 0.0004645 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002713 0.0002951 0.0003118 0.01% Castro::do_advance_ctu() 10 0.0001627 0.0001777 0.00019 0.01% Castro::clean_state() 62 0.0001472 0.0001645 0.0001877 0.01% FillPatchIterator::FillFromLevel0() 41 9.689e-05 0.0001131 0.0001352 0.00% Castro::Castro() 1 8.381e-05 9.652e-05 0.0001243 0.00% StateDataPhysBCFunct::() 41 0.0001045 0.0001156 0.0001223 0.00% Castro::do_old_sources() 10 7.738e-05 9.454e-05 0.0001158 0.00% Amr::FinalizeInit() 1 3.427e-06 1.854e-05 0.0001157 0.00% Castro::construct_old_source() 50 7.159e-05 8.727e-05 0.0001099 0.00% FabArray::ParallelCopy() 41 7.828e-05 9.175e-05 0.0001093 0.00% FillPatchSingleLevel 41 7.115e-05 8.201e-05 0.0001001 0.00% Castro::subcycle_advance_ctu() 10 4.36e-05 5.353e-05 7.38e-05 0.00% Castro::do_new_sources() 10 5.717e-05 6.306e-05 7.227e-05 0.00% Amr::defBaseLevel() 1 4.96e-05 5.727e-05 6.823e-05 0.00% Castro::apply_source_to_state() 20 3.495e-05 4.083e-05 5.509e-05 0.00% Castro::construct_new_gravity() 10 3.035e-05 3.517e-05 4.835e-05 0.00% Castro::advance() 10 3.898e-05 4.172e-05 4.561e-05 0.00% Castro::construct_old_gravity() 10 3.274e-05 3.884e-05 4.555e-05 0.00% Castro::expand_state() 10 2.047e-05 2.498e-05 3.504e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.91e-06 1.519e-05 2.83e-05 0.00% Castro::check_for_nan() 20 2.119e-05 2.37e-05 2.656e-05 0.00% Castro::post_init() 1 8.916e-06 1.355e-05 2.553e-05 0.00% Castro::post_timestep() 10 1.522e-05 1.665e-05 2.159e-05 0.00% Amr::InitializeInit() 1 3.048e-06 4.02e-06 6.761e-06 0.00% Castro::computeInitialDt() 2 2.955e-06 4.069e-06 5.076e-06 0.00% Amr::init() 1 2.125e-06 2.582e-06 3.228e-06 0.00% Amr::initialInit() 1 1.652e-06 2.119e-06 2.856e-06 0.00% Other 265 0.01117 0.01348 0.01558 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.57 3.571 3.571 100.00% Amr::coarseTimeStep() 10 3.289 3.289 3.289 92.10% Amr::timeStep() 10 3.276 3.277 3.277 91.77% Castro::advance() 10 3.26 3.261 3.262 91.33% Castro::subcycle_advance_ctu() 10 3.181 3.185 3.192 89.39% Castro::do_advance_ctu() 10 3.181 3.185 3.192 89.39% Castro::construct_ctu_hydro_source() 10 2.456 2.459 2.461 68.92% Gravity::make_radial_gravity() 21 0.3031 0.3109 0.3202 8.97% Amr::init() 1 0.2695 0.2698 0.27 7.56% Gravity::get_new_grav_vector() 11 0.2081 0.2097 0.2113 5.92% AmrLevel::FillPatch() 41 0.1844 0.1957 0.2073 5.81% Amr::initialInit() 1 0.1946 0.1949 0.1951 5.46% Castro::construct_old_gravity() 10 0.1793 0.1844 0.1901 5.32% Gravity::get_old_grav_vector() 10 0.1785 0.1837 0.1895 5.31% Castro::construct_new_gravity() 10 0.1854 0.1866 0.1878 5.26% FillPatchIterator::Initialize 41 0.1534 0.1625 0.1726 4.83% Castro::initialize_do_advance() 10 0.1568 0.1643 0.1718 4.81% Amr::InitializeInit() 1 0.07442 0.1194 0.1676 4.69% Amr::defBaseLevel() 1 0.07442 0.1194 0.1676 4.69% Castro::initData() 1 0.05671 0.09944 0.1418 3.97% check_for_negative_density() 10 0.02484 0.08508 0.1406 3.94% FillPatchIterator::FillFromLevel0() 41 0.1067 0.1174 0.1257 3.52% FillPatchSingleLevel 41 0.1066 0.1173 0.1256 3.52% Amr::FinalizeInit() 1 0.02705 0.07553 0.1206 3.38% Castro::expand_state() 10 0.1027 0.1103 0.1189 3.33% Castro::estTimeStep() 21 0.03312 0.07663 0.1178 3.30% Castro::clean_state() 62 0.1101 0.1138 0.116 3.25% Castro::computeInitialDt() 2 0.002334 0.0508 0.0959 2.69% Castro::do_old_sources() 10 0.09061 0.09265 0.09474 2.65% FabArray::ParallelCopy() 41 0.07602 0.08648 0.09319 2.61% amrex::Copy() 193 0.07105 0.0795 0.08747 2.45% Amr::writePlotFile() 2 0.08239 0.08246 0.08254 2.31% FabArray::setVal() 143 0.06255 0.07025 0.07719 2.16% Castro::initialize_advance() 10 0.06513 0.07199 0.07618 2.13% Castro::do_new_sources() 10 0.05975 0.06506 0.07 1.96% Castro::computeTemp() 63 0.06277 0.06713 0.0687 1.92% FabArray::ParallelCopy_finish() 41 0.0354 0.04625 0.05328 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04418 0.04747 0.04885 1.37% Castro::reset_internal_energy(Fab) 1008 0.04391 0.04718 0.04856 1.36% Castro::normalize_species() 62 0.04094 0.04139 0.04194 1.17% FabArray::ParallelCopy_nowait() 41 0.03911 0.04014 0.04136 1.16% StateDataPhysBCFunct::() 41 0.02865 0.03075 0.03295 0.92% StateData::FillBoundary(geom) 41 0.02853 0.03063 0.03283 0.92% Castro::construct_new_source() 50 0.02878 0.03074 0.03241 0.91% Gravity::interpolate_monopole_grav() 21 0.02725 0.02891 0.02981 0.83% Castro::construct_new_gravity_source() 10 0.0229 0.02475 0.02633 0.74% Castro::finalize_do_advance() 10 0.01239 0.018 0.02452 0.69% Castro::post_init() 1 0.02421 0.02433 0.02444 0.68% Castro::post_timestep() 10 0.01526 0.01566 0.01626 0.46% Castro::Castro() 1 0.009868 0.0125 0.01624 0.45% FabArray::setDomainBndry() 41 0.009708 0.01213 0.01441 0.40% Castro::apply_source_to_state() 20 0.01201 0.01251 0.01299 0.36% FabArray::Saxpy() 20 0.01197 0.01247 0.01294 0.36% VisMF::Write(FabArray) 2 0.008823 0.009465 0.01193 0.33% Castro::check_for_nan() 20 0.009712 0.01068 0.01161 0.33% MultiFab::contains_nan() 20 0.009689 0.01066 0.01158 0.32% Castro::initMFs() 1 0.006779 0.008453 0.01148 0.32% Castro::construct_old_source() 50 0.009137 0.009649 0.009892 0.28% Castro::construct_old_gravity_source() 10 0.009065 0.009562 0.009782 0.27% AmrLevel::AmrLevel(dm) 1 0.006017 0.007061 0.009751 0.27% StateData::define() 4 0.006004 0.007046 0.009723 0.27% Other 265 0.02464 0.02785 0.03058 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 40 B 44 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-27-gd857968968ae) finalized