Initializing AMReX (24.05)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05) initialized Starting run at 19:30:41 UTC on 2024-05-01. Successfully read inputs file ... Castro git describe: 24.05-1-g7d1a1c16d AMReX git describe: 24.05 Microphysics git describe: 24.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014817228 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357537237 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351042533 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330875885 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.375061042 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.339074469 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315368006 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315679275 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315996947 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315586309 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316134625 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007447356 seconds Ending run at 19:30:45 UTC on 2024-05-01. Run time = 3.554137219 Run time without initialization = 3.344122571 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.554 ... 3.554 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3649 2.4036 2.4508 68.96% Gravity::make_radial_gravity() 21 0.2993 0.3071 0.3202 9.01% Castro::initData() 1 0.04858 0.0945 0.1435 4.04% Castro::estTimeStep() 21 0.03651 0.08101 0.1359 3.82% check_for_negative_density() 10 0.02336 0.0737 0.1162 3.27% amrex::Copy() 193 0.06151 0.07522 0.08311 2.34% FabArray::setVal() 143 0.06135 0.06731 0.07816 2.20% FabArray::ParallelCopy_finish() 41 0.04093 0.05097 0.07415 2.09% Castro::reset_internal_energy(Fab) 1008 0.04458 0.04675 0.04819 1.36% Castro::normalize_species() 62 0.04114 0.04212 0.04324 1.22% FabArray::ParallelCopy_nowait() 41 0.03358 0.03825 0.03979 1.12% FillPatchIterator::Initialize 41 0.02857 0.03128 0.03332 0.94% StateData::FillBoundary(geom) 41 0.02983 0.0312 0.03236 0.91% Gravity::interpolate_monopole_grav() 21 0.02788 0.02943 0.0305 0.86% Castro::construct_new_gravity_source() 10 0.02265 0.0247 0.02739 0.77% Castro::computeTemp() 63 0.01873 0.01952 0.0203 0.57% Castro::initialize_do_advance() 10 0.01315 0.01696 0.01916 0.54% MultiFab::contains_nan() 20 0.009567 0.0113 0.01864 0.52% FabArray::Saxpy() 20 0.01142 0.01191 0.01298 0.37% Castro::initialize_advance() 10 0.005556 0.009888 0.01261 0.35% Amr::writePlotFile() 2 0.007548 0.01077 0.01259 0.35% VisMF::Write(FabArray) 2 0.008573 0.009341 0.01235 0.35% FabArray::setDomainBndry() 41 0.008847 0.01068 0.01175 0.33% Castro::initMFs() 1 0.006074 0.007684 0.009784 0.28% Castro::construct_old_gravity_source() 10 0.006445 0.008877 0.009465 0.27% Castro::construct_new_source() 50 0.005419 0.005862 0.006142 0.17% Gravity::get_new_grav_vector() 11 0.002844 0.00379 0.005173 0.15% main() 1 0.003317 0.003501 0.00363 0.10% Amr::coarseTimeStep() 10 0.001874 0.002175 0.002368 0.07% Gravity::get_old_grav_vector() 10 0.001638 0.001908 0.002116 0.06% AmrLevel::FillPatch() 41 0.0007057 0.00092 0.001324 0.04% Castro::finalize_do_advance() 10 0.0003889 0.0009728 0.001086 0.03% Amr::timeStep() 10 0.000152 0.0002191 0.0004792 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002653 0.000274 0.0002876 0.01% Castro::do_advance_ctu() 10 0.0001437 0.0001677 0.0002006 0.01% Castro::clean_state() 62 0.0001415 0.0001514 0.0001656 0.00% StateDataPhysBCFunct::() 41 8.774e-05 0.0001023 0.0001251 0.00% FillPatchIterator::FillFromLevel0() 41 9.421e-05 0.0001034 0.0001228 0.00% Castro::do_old_sources() 10 7.472e-05 8.713e-05 0.0001064 0.00% Castro::Castro() 1 6.873e-05 8.534e-05 0.0001058 0.00% Castro::construct_old_source() 50 6.336e-05 7.825e-05 9.799e-05 0.00% FabArray::ParallelCopy() 41 6.972e-05 7.535e-05 8.709e-05 0.00% FillPatchSingleLevel 41 6.973e-05 7.504e-05 8.697e-05 0.00% Amr::FinalizeInit() 1 2.953e-06 1.309e-05 7.549e-05 0.00% Amr::defBaseLevel() 1 4.647e-05 5.455e-05 7.008e-05 0.00% Castro::construct_new_gravity() 10 2.873e-05 3.81e-05 7.002e-05 0.00% Castro::do_new_sources() 10 4.913e-05 5.983e-05 6.48e-05 0.00% Castro::subcycle_advance_ctu() 10 4.383e-05 4.947e-05 5.779e-05 0.00% Castro::check_for_nan() 20 2.077e-05 2.678e-05 5.235e-05 0.00% Castro::advance() 10 4.191e-05 4.599e-05 5.224e-05 0.00% Castro::apply_source_to_state() 20 3.581e-05 4.094e-05 4.802e-05 0.00% Castro::construct_old_gravity() 10 2.889e-05 3.386e-05 4.349e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.654e-06 1.645e-05 2.912e-05 0.00% Castro::expand_state() 10 2.121e-05 2.35e-05 2.544e-05 0.00% Castro::post_timestep() 10 1.351e-05 1.703e-05 2.117e-05 0.00% Castro::post_init() 1 8.925e-06 1.118e-05 1.767e-05 0.00% Castro::computeNewDt() 9 7.559e-06 9.016e-06 1.103e-05 0.00% Amr::initialInit() 1 1.348e-06 2.232e-06 6.809e-06 0.00% Amr::InitializeInit() 1 3.061e-06 3.74e-06 5.746e-06 0.00% Castro::computeInitialDt() 2 3.283e-06 4.056e-06 5.707e-06 0.00% Amr::init() 1 1.646e-06 1.947e-06 2.275e-06 0.00% Other 260 0.01549 0.019 0.02293 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.554 3.554 3.554 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 93.78% Amr::timeStep() 10 3.32 3.32 3.321 93.43% Castro::advance() 10 3.304 3.305 3.305 93.00% Castro::subcycle_advance_ctu() 10 3.224 3.232 3.236 91.04% Castro::do_advance_ctu() 10 3.224 3.232 3.236 91.04% Castro::construct_ctu_hydro_source() 10 2.496 2.499 2.504 70.44% Gravity::make_radial_gravity() 21 0.3156 0.323 0.3333 9.38% Gravity::get_new_grav_vector() 11 0.2133 0.2196 0.2213 6.23% Amr::init() 1 0.2091 0.2094 0.2095 5.89% AmrLevel::FillPatch() 41 0.1825 0.1939 0.2014 5.67% Castro::construct_new_gravity() 10 0.1889 0.1946 0.196 5.51% Amr::initialInit() 1 0.1937 0.1942 0.1947 5.48% Castro::construct_old_gravity() 10 0.1818 0.1855 0.1925 5.42% Gravity::get_old_grav_vector() 10 0.1811 0.1848 0.1914 5.39% FillPatchIterator::Initialize 41 0.1513 0.1628 0.176 4.95% Castro::initialize_do_advance() 10 0.1559 0.1632 0.1685 4.74% Amr::InitializeInit() 1 0.06625 0.1162 0.1653 4.65% Amr::defBaseLevel() 1 0.06625 0.1162 0.1653 4.65% Castro::initData() 1 0.05198 0.0982 0.1477 4.16% FillPatchIterator::FillFromLevel0() 41 0.111 0.1209 0.1386 3.90% FillPatchSingleLevel 41 0.1109 0.1208 0.1385 3.90% Castro::estTimeStep() 21 0.03651 0.08101 0.1359 3.82% Amr::FinalizeInit() 1 0.02936 0.07809 0.1281 3.60% check_for_negative_density() 10 0.02336 0.0737 0.1162 3.27% Castro::expand_state() 10 0.1018 0.1106 0.116 3.26% Castro::clean_state() 62 0.1111 0.1138 0.1158 3.26% FabArray::ParallelCopy() 41 0.07917 0.08938 0.1079 3.04% Castro::computeInitialDt() 2 0.002617 0.05168 0.1016 2.86% Castro::do_old_sources() 10 0.08587 0.08916 0.09141 2.57% amrex::Copy() 193 0.06151 0.07522 0.08311 2.34% FabArray::setVal() 143 0.06135 0.06731 0.07816 2.20% Castro::initialize_advance() 10 0.06475 0.0688 0.07685 2.16% FabArray::ParallelCopy_finish() 41 0.04093 0.05097 0.07415 2.09% Castro::do_new_sources() 10 0.05995 0.06472 0.0719 2.02% Castro::computeTemp() 63 0.06396 0.06654 0.06877 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04485 0.04702 0.04847 1.36% Castro::reset_internal_energy(Fab) 1008 0.04458 0.04675 0.04819 1.36% Castro::normalize_species() 62 0.04114 0.04212 0.04324 1.22% FabArray::ParallelCopy_nowait() 41 0.03367 0.03834 0.03986 1.12% Castro::construct_new_source() 50 0.02845 0.03057 0.03342 0.94% StateDataPhysBCFunct::() 41 0.02995 0.0313 0.03246 0.91% StateData::FillBoundary(geom) 41 0.02983 0.0312 0.03236 0.91% Gravity::interpolate_monopole_grav() 21 0.02788 0.02943 0.0305 0.86% Castro::construct_new_gravity_source() 10 0.02265 0.0247 0.02739 0.77% Castro::post_init() 1 0.0259 0.02613 0.0264 0.74% Castro::finalize_do_advance() 10 0.01328 0.02109 0.02617 0.74% Amr::writePlotFile() 2 0.02232 0.02266 0.023 0.65% Castro::check_for_nan() 20 0.009592 0.01132 0.0187 0.53% MultiFab::contains_nan() 20 0.009567 0.0113 0.01864 0.52% Castro::post_timestep() 10 0.01523 0.0157 0.01603 0.45% Castro::Castro() 1 0.008883 0.01129 0.0139 0.39% Castro::apply_source_to_state() 20 0.01147 0.01195 0.01303 0.37% FabArray::Saxpy() 20 0.01142 0.01191 0.01298 0.37% VisMF::Write(FabArray) 2 0.008573 0.009341 0.01235 0.35% FabArray::setDomainBndry() 41 0.008847 0.01068 0.01175 0.33% Castro::initMFs() 1 0.006074 0.007684 0.009784 0.28% Castro::construct_old_source() 50 0.006515 0.008955 0.009545 0.27% Castro::construct_old_gravity_source() 10 0.006445 0.008877 0.009465 0.27% Castro::computeNewDt() 9 0.009221 0.009237 0.009267 0.26% AmrLevel::AmrLevel(dm) 1 0.005078 0.006334 0.008267 0.23% Other 260 0.01994 0.02438 0.02954 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05) finalized