Initializing AMReX (24.04-29-g95a92e2f8222)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-29-g95a92e2f8222) initialized Starting run at 05:20:36 UTC on 2024-05-01. Successfully read inputs file ... Castro git describe: 24.04-26-g290eea83f AMReX git describe: 24.04-29-g95a92e2f8 Microphysics git describe: 24.04-10-g8e7e3750 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015426301 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355308177 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350624622 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.354156493 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.368271664 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.32700515 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.307980376 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309980033 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312959165 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31299766 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313447467 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.040519443 seconds Ending run at 05:20:39 UTC on 2024-05-01. Run time = 3.554594175 Run time without initialization = 3.358286953 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.554 ... 3.554 ... 3.555 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2761 2.3717 2.4344 68.48% Gravity::make_radial_gravity() 21 0.2882 0.2952 0.3036 8.54% check_for_negative_density() 10 0.01971 0.08539 0.1832 5.16% Castro::initData() 1 0.04725 0.09337 0.1306 3.67% Castro::estTimeStep() 21 0.0238 0.06585 0.1198 3.37% amrex::Copy() 193 0.07624 0.08139 0.08661 2.44% FabArray::setVal() 143 0.066 0.07176 0.07866 2.21% FabArray::ParallelCopy_finish() 41 0.03636 0.04503 0.0518 1.46% Castro::reset_internal_energy(Fab) 1008 0.04392 0.0471 0.04842 1.36% Amr::writePlotFile() 2 0.04078 0.04346 0.04436 1.25% Castro::normalize_species() 62 0.04071 0.04147 0.04251 1.20% FabArray::ParallelCopy_nowait() 41 0.03762 0.03974 0.04121 1.16% FillPatchIterator::Initialize 41 0.02941 0.03328 0.03568 1.00% StateData::FillBoundary(geom) 41 0.02833 0.03092 0.03316 0.93% Gravity::interpolate_monopole_grav() 21 0.02696 0.02881 0.02964 0.83% Castro::construct_new_gravity_source() 10 0.02211 0.02468 0.02684 0.76% Castro::initialize_do_advance() 10 0.0173 0.01847 0.02054 0.58% Castro::computeTemp() 63 0.01738 0.01951 0.02023 0.57% FabArray::setDomainBndry() 41 0.009255 0.0121 0.01385 0.39% Castro::initialize_advance() 10 0.009661 0.0114 0.01314 0.37% FabArray::Saxpy() 20 0.01217 0.01257 0.013 0.37% VisMF::Write(FabArray) 2 0.009198 0.009919 0.01254 0.35% MultiFab::contains_nan() 20 0.009428 0.01016 0.01092 0.31% Castro::construct_old_gravity_source() 10 0.009193 0.009503 0.009875 0.28% Castro::initMFs() 1 0.006585 0.007582 0.008244 0.23% Castro::construct_new_source() 50 0.005875 0.006097 0.006339 0.18% Gravity::get_new_grav_vector() 11 0.003013 0.004231 0.005559 0.16% main() 1 0.003262 0.003783 0.004336 0.12% Amr::coarseTimeStep() 10 0.002318 0.002895 0.003688 0.10% Gravity::get_old_grav_vector() 10 0.001548 0.002115 0.002458 0.07% Castro::finalize_do_advance() 10 0.001085 0.001149 0.001216 0.03% AmrLevel::FillPatch() 41 0.0009784 0.001036 0.001199 0.03% Amr::timeStep() 10 0.0001714 0.0002158 0.0003973 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002763 0.0002915 0.0003357 0.01% Castro::do_advance_ctu() 10 0.0001463 0.0001719 0.0001907 0.01% Castro::clean_state() 62 0.000135 0.0001539 0.0001605 0.00% Castro::Castro() 1 7.311e-05 0.0001034 0.0001299 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001055 0.0001146 0.000121 0.00% StateDataPhysBCFunct::() 41 0.0001021 0.0001058 0.0001109 0.00% Castro::do_old_sources() 10 8.124e-05 9.251e-05 0.0001103 0.00% Amr::FinalizeInit() 1 3.978e-06 1.691e-05 0.0001044 0.00% Castro::construct_old_source() 50 5.766e-05 7.689e-05 9.587e-05 0.00% FabArray::ParallelCopy() 41 7.666e-05 8.461e-05 9.446e-05 0.00% FillPatchSingleLevel 41 7.007e-05 7.727e-05 8.213e-05 0.00% Castro::subcycle_advance_ctu() 10 4.725e-05 5.633e-05 6.533e-05 0.00% Castro::do_new_sources() 10 5.306e-05 5.874e-05 6.392e-05 0.00% Castro::advance() 10 4.314e-05 5.095e-05 6.199e-05 0.00% Amr::defBaseLevel() 1 4.422e-05 5.258e-05 6.05e-05 0.00% Castro::apply_source_to_state() 20 3.828e-05 4.323e-05 5.118e-05 0.00% Castro::construct_old_gravity() 10 3.615e-05 3.902e-05 4.574e-05 0.00% Castro::construct_new_gravity() 10 2.92e-05 3.444e-05 4.378e-05 0.00% Castro::expand_state() 10 2.045e-05 2.513e-05 2.939e-05 0.00% Castro::check_for_nan() 20 2.041e-05 2.293e-05 2.54e-05 0.00% Castro::post_timestep() 10 1.403e-05 1.708e-05 2.469e-05 0.00% Castro::post_init() 1 7.294e-06 9.948e-06 1.8e-05 0.00% Castro::computeNewDt() 9 8.574e-06 1.031e-05 1.26e-05 0.00% Amr::initialInit() 1 1.56e-06 3.425e-06 8.808e-06 0.00% Amr::InitializeInit() 1 2.898e-06 3.629e-06 6.361e-06 0.00% Castro::computeInitialDt() 2 3.379e-06 4.116e-06 4.732e-06 0.00% Amr::init() 1 1.828e-06 2.289e-06 2.648e-06 0.00% Other 261 0.01804 0.02053 0.02168 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.554 3.554 3.555 100.00% Amr::coarseTimeStep() 10 3.314 3.314 3.314 93.22% Amr::timeStep() 10 3.3 3.3 3.301 92.87% Castro::advance() 10 3.284 3.284 3.285 92.41% Castro::subcycle_advance_ctu() 10 3.204 3.209 3.213 90.38% Castro::do_advance_ctu() 10 3.204 3.209 3.213 90.38% Castro::construct_ctu_hydro_source() 10 2.476 2.478 2.481 69.80% Gravity::make_radial_gravity() 21 0.3054 0.3121 0.3198 9.00% Gravity::get_new_grav_vector() 11 0.2097 0.2118 0.2144 6.03% AmrLevel::FillPatch() 41 0.1853 0.1954 0.2061 5.80% Amr::init() 1 0.1955 0.1957 0.1957 5.51% Castro::construct_new_gravity() 10 0.1872 0.1887 0.1906 5.36% Castro::construct_old_gravity() 10 0.1805 0.1841 0.1905 5.36% Gravity::get_old_grav_vector() 10 0.1798 0.1834 0.1899 5.34% check_for_negative_density() 10 0.01971 0.08539 0.1832 5.16% Amr::initialInit() 1 0.1798 0.18 0.1802 5.07% Castro::initialize_do_advance() 10 0.157 0.165 0.1723 4.85% FillPatchIterator::Initialize 41 0.1545 0.1615 0.1704 4.79% Amr::InitializeInit() 1 0.0663 0.1157 0.153 4.30% Amr::defBaseLevel() 1 0.0663 0.1157 0.153 4.30% Castro::initData() 1 0.05084 0.09736 0.1345 3.78% FillPatchIterator::FillFromLevel0() 41 0.1077 0.1162 0.1236 3.48% FillPatchSingleLevel 41 0.1076 0.116 0.1234 3.47% Castro::estTimeStep() 21 0.0238 0.06585 0.1198 3.37% Castro::expand_state() 10 0.1016 0.1101 0.119 3.35% Castro::clean_state() 62 0.1101 0.1149 0.1168 3.29% Amr::FinalizeInit() 1 0.02695 0.06433 0.1139 3.20% Castro::do_old_sources() 10 0.09017 0.09232 0.09381 2.64% FabArray::ParallelCopy() 41 0.07739 0.08494 0.09091 2.56% Castro::computeInitialDt() 2 0.002262 0.03956 0.08903 2.50% amrex::Copy() 193 0.07624 0.08139 0.08661 2.44% FabArray::setVal() 143 0.066 0.07176 0.07866 2.21% Castro::initialize_advance() 10 0.0685 0.07201 0.07653 2.15% Castro::do_new_sources() 10 0.05836 0.06625 0.07241 2.04% Castro::computeTemp() 63 0.06158 0.0669 0.06892 1.94% Amr::writePlotFile() 2 0.05614 0.05626 0.05651 1.59% FabArray::ParallelCopy_finish() 41 0.03636 0.04503 0.0518 1.46% Castro::reset_internal_energy(MultiFab) 63 0.0442 0.04739 0.04871 1.37% Castro::reset_internal_energy(Fab) 1008 0.04392 0.0471 0.04842 1.36% Castro::normalize_species() 62 0.04071 0.04147 0.04251 1.20% FabArray::ParallelCopy_nowait() 41 0.03771 0.03983 0.0413 1.16% StateDataPhysBCFunct::() 41 0.02843 0.03103 0.03327 0.94% StateData::FillBoundary(geom) 41 0.02833 0.03092 0.03316 0.93% Castro::construct_new_source() 50 0.02799 0.03078 0.03315 0.93% Gravity::interpolate_monopole_grav() 21 0.02696 0.02881 0.02964 0.83% Castro::construct_new_gravity_source() 10 0.02211 0.02468 0.02684 0.76% Castro::finalize_do_advance() 10 0.01228 0.01842 0.02623 0.74% Castro::post_init() 1 0.02407 0.0243 0.02445 0.69% Castro::post_timestep() 10 0.01551 0.01586 0.01618 0.46% FabArray::setDomainBndry() 41 0.009255 0.0121 0.01385 0.39% Castro::Castro() 1 0.009566 0.01197 0.01308 0.37% Castro::apply_source_to_state() 20 0.01221 0.01261 0.01304 0.37% FabArray::Saxpy() 20 0.01217 0.01257 0.013 0.37% VisMF::Write(FabArray) 2 0.009198 0.009919 0.01254 0.35% Castro::check_for_nan() 20 0.009451 0.01018 0.01095 0.31% MultiFab::contains_nan() 20 0.009428 0.01016 0.01092 0.31% Castro::construct_old_source() 50 0.00925 0.00958 0.009971 0.28% Castro::construct_old_gravity_source() 10 0.009193 0.009503 0.009875 0.28% Castro::computeNewDt() 9 0.009028 0.009034 0.009044 0.25% Castro::initMFs() 1 0.006585 0.007582 0.008244 0.23% Other 261 0.02824 0.03193 0.03377 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-29-g95a92e2f8222) finalized