Initializing AMReX (24.05-1-g1735fd5c65d6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-1-g1735fd5c65d6) initialized Starting run at 05:29:06 UTC on 2024-05-02. Successfully read inputs file ... Castro git describe: 24.05 AMReX git describe: 24.05-1-g1735fd5c6 Microphysics git describe: 24.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015852925 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360356034 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.367045341 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344641783 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.386952735 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.334915714 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.308223212 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309172108 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308545641 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309093539 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309447456 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007705498 seconds Ending run at 05:29:10 UTC on 2024-05-02. Run time = 3.543800515 Run time without initialization = 3.350496314 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.544 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2629 2.3675 2.4245 68.41% Gravity::make_radial_gravity() 21 0.3019 0.3117 0.3244 9.15% check_for_negative_density() 10 0.03598 0.09492 0.202 5.70% Castro::initData() 1 0.04736 0.09058 0.1279 3.61% Castro::estTimeStep() 21 0.02724 0.07101 0.1196 3.37% amrex::Copy() 193 0.06922 0.07854 0.08556 2.41% FabArray::setVal() 143 0.06327 0.07027 0.08164 2.30% FabArray::ParallelCopy_finish() 41 0.03741 0.05345 0.06623 1.87% Castro::reset_internal_energy(Fab) 1008 0.04533 0.04664 0.04988 1.41% Castro::normalize_species() 62 0.04091 0.04244 0.04387 1.24% FabArray::ParallelCopy_nowait() 41 0.03424 0.03913 0.04093 1.16% FillPatchIterator::Initialize 41 0.0291 0.0328 0.03497 0.99% StateData::FillBoundary(geom) 41 0.02773 0.03026 0.03204 0.90% Gravity::interpolate_monopole_grav() 21 0.02825 0.02919 0.03022 0.85% Castro::construct_new_gravity_source() 10 0.0228 0.02454 0.02698 0.76% Castro::initialize_do_advance() 10 0.01325 0.01744 0.02069 0.58% Castro::computeTemp() 63 0.01797 0.01945 0.02054 0.58% FabArray::setDomainBndry() 41 0.008347 0.01176 0.01371 0.39% Castro::initialize_advance() 10 0.009642 0.0113 0.01327 0.37% VisMF::Write(FabArray) 2 0.008976 0.009743 0.01297 0.37% FabArray::Saxpy() 20 0.01163 0.01211 0.01248 0.35% Amr::writePlotFile() 2 0.00792 0.01095 0.0119 0.34% MultiFab::contains_nan() 20 0.009189 0.009929 0.01066 0.30% Castro::construct_old_gravity_source() 10 0.006337 0.008759 0.009362 0.26% Castro::enforce_min_density() 62 0.007035 0.007375 0.008003 0.23% Castro::construct_new_source() 50 0.005628 0.005899 0.006034 0.17% Gravity::get_new_grav_vector() 11 0.002927 0.003934 0.0053 0.15% main() 1 0.003223 0.003517 0.003671 0.10% Amr::coarseTimeStep() 10 0.001371 0.002777 0.003543 0.10% Gravity::get_old_grav_vector() 10 0.001684 0.002037 0.002533 0.07% AmrLevel::FillPatch() 41 0.0006899 0.001045 0.001181 0.03% Castro::finalize_do_advance() 10 0.0004372 0.0008766 0.001091 0.03% Amr::timeStep() 10 0.0001747 0.0002179 0.0004159 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000265 0.0002862 0.000296 0.01% Castro::clean_state() 62 0.0001463 0.0001707 0.0002091 0.01% Castro::do_advance_ctu() 10 0.0001617 0.0001769 0.000194 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001062 0.0001147 0.0001348 0.00% StateDataPhysBCFunct::() 41 0.000105 0.0001123 0.0001259 0.00% Castro::Castro() 1 7.855e-05 8.931e-05 0.0001105 0.00% Amr::FinalizeInit() 1 3.842e-06 1.756e-05 0.0001078 0.00% Castro::do_old_sources() 10 8.827e-05 9.475e-05 9.978e-05 0.00% Castro::construct_old_source() 50 6.643e-05 7.839e-05 9.238e-05 0.00% FabArray::ParallelCopy() 41 7.759e-05 8.399e-05 8.987e-05 0.00% FillPatchSingleLevel 41 7.869e-05 8.361e-05 8.934e-05 0.00% Castro::subcycle_advance_ctu() 10 4.342e-05 5.547e-05 7.418e-05 0.00% Amr::defBaseLevel() 1 4.738e-05 5.203e-05 6.24e-05 0.00% Castro::do_new_sources() 10 5.553e-05 5.897e-05 6.2e-05 0.00% Castro::advance() 10 3.928e-05 4.579e-05 5.654e-05 0.00% Castro::apply_source_to_state() 20 3.618e-05 4.229e-05 5.004e-05 0.00% Castro::construct_old_gravity() 10 3.555e-05 3.757e-05 4.248e-05 0.00% Castro::construct_new_gravity() 10 2.97e-05 3.244e-05 3.728e-05 0.00% Castro::check_for_nan() 20 1.984e-05 2.308e-05 3.006e-05 0.00% Castro::expand_state() 10 2.106e-05 2.433e-05 2.966e-05 0.00% Castro::post_timestep() 10 1.446e-05 1.639e-05 2.026e-05 0.00% Castro::post_init() 1 9.1e-06 1.013e-05 1.417e-05 0.00% Castro::computeNewDt() 9 7.995e-06 9.442e-06 1.186e-05 0.00% Amr::init() 1 1.966e-06 3.516e-06 1.129e-05 0.00% Amr::initialInit() 1 1.395e-06 2.664e-06 7.406e-06 0.00% Amr::InitializeInit() 1 2.935e-06 3.806e-06 7.386e-06 0.00% Castro::computeInitialDt() 2 3.318e-06 4.027e-06 4.743e-06 0.00% Other 200 0.01716 0.01996 0.02165 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.544 3.544 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 94.22% Amr::timeStep() 10 3.325 3.326 3.327 93.88% Castro::advance() 10 3.309 3.31 3.31 93.41% Castro::subcycle_advance_ctu() 10 3.224 3.234 3.24 91.41% Castro::do_advance_ctu() 10 3.224 3.234 3.24 91.41% Castro::construct_ctu_hydro_source() 10 2.481 2.484 2.485 70.13% Gravity::make_radial_gravity() 21 0.3192 0.3283 0.3383 9.55% Gravity::get_new_grav_vector() 11 0.2229 0.2262 0.2279 6.43% AmrLevel::FillPatch() 41 0.1882 0.2001 0.2108 5.95% Castro::construct_new_gravity() 10 0.2 0.2031 0.2045 5.77% check_for_negative_density() 10 0.03598 0.09492 0.202 5.70% Castro::construct_old_gravity() 10 0.1823 0.1867 0.1947 5.49% Gravity::get_old_grav_vector() 10 0.1816 0.186 0.1936 5.46% Amr::init() 1 0.1925 0.1927 0.1928 5.44% Amr::initialInit() 1 0.1765 0.1769 0.177 4.99% Castro::initialize_do_advance() 10 0.1527 0.1678 0.1766 4.98% FillPatchIterator::Initialize 41 0.1535 0.1679 0.1763 4.98% Amr::InitializeInit() 1 0.06745 0.1118 0.1499 4.23% Amr::defBaseLevel() 1 0.06744 0.1118 0.1499 4.23% Castro::initData() 1 0.05124 0.09433 0.1315 3.71% FillPatchIterator::FillFromLevel0() 41 0.1067 0.1233 0.1302 3.67% FillPatchSingleLevel 41 0.1066 0.1232 0.1301 3.67% Castro::expand_state() 10 0.1039 0.1142 0.124 3.50% Castro::clean_state() 62 0.1122 0.1155 0.122 3.44% Castro::estTimeStep() 21 0.02724 0.07101 0.1196 3.37% Amr::FinalizeInit() 1 0.02682 0.06505 0.1095 3.09% FabArray::ParallelCopy() 41 0.07657 0.09276 0.1007 2.84% Castro::do_old_sources() 10 0.08792 0.09046 0.09308 2.63% amrex::Copy() 193 0.06922 0.07854 0.08556 2.41% Castro::computeInitialDt() 2 0.002323 0.04038 0.08475 2.39% Castro::initialize_advance() 10 0.06667 0.07243 0.08197 2.31% FabArray::setVal() 143 0.06327 0.07027 0.08164 2.30% Castro::do_new_sources() 10 0.06042 0.06495 0.0717 2.02% Castro::computeTemp() 63 0.06371 0.06637 0.07071 2.00% FabArray::ParallelCopy_finish() 41 0.03741 0.05345 0.06623 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04561 0.04693 0.05018 1.42% Castro::reset_internal_energy(Fab) 1008 0.04533 0.04664 0.04988 1.41% Castro::normalize_species() 62 0.04091 0.04244 0.04387 1.24% FabArray::ParallelCopy_nowait() 41 0.03434 0.03922 0.04102 1.16% Castro::construct_new_source() 50 0.0288 0.03044 0.03293 0.93% StateDataPhysBCFunct::() 41 0.02784 0.03037 0.03216 0.91% StateData::FillBoundary(geom) 41 0.02773 0.03026 0.03204 0.90% Gravity::interpolate_monopole_grav() 21 0.02825 0.02919 0.03022 0.85% Castro::finalize_do_advance() 10 0.01493 0.02202 0.02723 0.77% Castro::construct_new_gravity_source() 10 0.0228 0.02454 0.02698 0.76% Castro::post_init() 1 0.02401 0.02428 0.02442 0.69% Amr::writePlotFile() 2 0.02355 0.02366 0.02386 0.67% Castro::post_timestep() 10 0.01527 0.01586 0.01656 0.47% FabArray::setDomainBndry() 41 0.008347 0.01176 0.01371 0.39% VisMF::Write(FabArray) 2 0.008976 0.009743 0.01297 0.37% Castro::apply_source_to_state() 20 0.01166 0.01215 0.01253 0.35% FabArray::Saxpy() 20 0.01163 0.01211 0.01248 0.35% Castro::Castro() 1 0.009899 0.01116 0.01202 0.34% Castro::check_for_nan() 20 0.009209 0.009952 0.01068 0.30% MultiFab::contains_nan() 20 0.009189 0.009929 0.01066 0.30% Castro::computeNewDt() 9 0.009476 0.009499 0.009513 0.27% Castro::construct_old_source() 50 0.006404 0.008837 0.009446 0.27% Castro::construct_old_gravity_source() 10 0.006337 0.008759 0.009362 0.26% Castro::enforce_min_density() 62 0.007035 0.007375 0.008003 0.23% Other 200 0.02728 0.03123 0.03407 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 40 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-1-g1735fd5c65d6) finalized