Initializing AMReX (24.05-2-gee11254ffc7c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-2-gee11254ffc7c) initialized Starting run at 05:23:04 UTC on 2024-05-03. Successfully read inputs file ... Castro git describe: 24.05 AMReX git describe: 24.05-2-gee11254ff Microphysics git describe: 24.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01696455 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.3672317 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338776148 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334301554 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.355653549 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.322689681 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.307945109 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308488687 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308683625 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308879321 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308724357 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007910544 seconds Ending run at 05:23:07 UTC on 2024-05-03. Run time = 3.506461517 Run time without initialization = 3.274078586 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.506 ... 3.506 ... 3.507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2428 2.3509 2.3776 67.81% Gravity::make_radial_gravity() 21 0.2968 0.3013 0.3126 8.91% check_for_negative_density() 10 0.03019 0.0578 0.1687 4.81% Castro::initData() 1 0.0491 0.08636 0.1256 3.58% Castro::estTimeStep() 21 0.02683 0.07279 0.1146 3.27% FabArray::ParallelCopy_finish() 41 0.04147 0.05249 0.08315 2.37% amrex::Copy() 193 0.06221 0.07416 0.08028 2.29% FabArray::setVal() 143 0.06098 0.065 0.06898 1.97% Castro::normalize_species() 62 0.04189 0.04782 0.05712 1.63% Castro::reset_internal_energy(Fab) 1008 0.04607 0.04757 0.04908 1.40% FabArray::ParallelCopy_nowait() 41 0.03339 0.03824 0.03986 1.14% FillPatchIterator::Initialize 41 0.02826 0.03318 0.03458 0.99% Amr::InitAmr() 1 0.0003906 0.004729 0.03453 0.98% DistributionMapping::LeastUsedCPUs() 1 2.285e-05 0.02981 0.03417 0.97% StateData::FillBoundary(geom) 41 0.02673 0.03103 0.0329 0.94% Gravity::interpolate_monopole_grav() 21 0.02704 0.02894 0.03165 0.90% Castro::construct_new_gravity_source() 10 0.02234 0.02284 0.02337 0.67% Castro::computeTemp() 63 0.01947 0.02003 0.0206 0.59% Castro::initialize_do_advance() 10 0.01305 0.01712 0.01865 0.53% VisMF::Write(FabArray) 2 0.01007 0.01115 0.01549 0.44% FabArray::setDomainBndry() 41 0.008888 0.01189 0.01387 0.40% Castro::initialize_advance() 10 0.005603 0.0096 0.01197 0.34% Amr::writePlotFile() 2 0.008126 0.01094 0.01176 0.34% Castro::initMFs() 1 0.006512 0.007963 0.01152 0.33% FabArray::Saxpy() 20 0.01066 0.01111 0.01135 0.32% MultiFab::contains_nan() 20 0.009352 0.00965 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006641 0.007867 0.008465 0.24% Castro::construct_new_source() 50 0.005304 0.005784 0.005991 0.17% Gravity::get_new_grav_vector() 11 0.00338 0.004143 0.005368 0.15% Amr::coarseTimeStep() 10 0.002554 0.004088 0.005131 0.15% main() 1 0.003399 0.003674 0.003919 0.11% Gravity::get_old_grav_vector() 10 0.001981 0.00223 0.002578 0.07% AmrLevel::FillPatch() 41 0.0008542 0.00113 0.001234 0.04% Castro::finalize_do_advance() 10 0.001004 0.001094 0.00113 0.03% Amr::timeStep() 10 0.0001755 0.0002294 0.0004847 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000264 0.0002878 0.0003242 0.01% Castro::clean_state() 62 0.000148 0.0001667 0.0002262 0.01% Castro::do_advance_ctu() 10 0.0001578 0.0001727 0.0001946 0.01% Castro::Castro() 1 7.773e-05 0.0001075 0.0001784 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.0001154 0.0001578 0.00% StateDataPhysBCFunct::() 41 0.0001002 0.000114 0.0001433 0.00% Castro::do_old_sources() 10 8.292e-05 9.374e-05 0.0001036 0.00% FabArray::ParallelCopy() 41 7.394e-05 8.474e-05 9.922e-05 0.00% FillPatchSingleLevel 41 6.877e-05 8.137e-05 9.779e-05 0.00% Amr::FinalizeInit() 1 4.071e-06 1.663e-05 8.986e-05 0.00% Castro::construct_old_source() 50 6.475e-05 7.58e-05 8.876e-05 0.00% Castro::do_new_sources() 10 5.329e-05 6.163e-05 7.377e-05 0.00% Castro::subcycle_advance_ctu() 10 4.404e-05 4.937e-05 6.413e-05 0.00% Amr::defBaseLevel() 1 4.12e-05 5.019e-05 6.208e-05 0.00% Castro::advance() 10 4.045e-05 4.526e-05 5.09e-05 0.00% Castro::apply_source_to_state() 20 3.585e-05 3.928e-05 4.569e-05 0.00% Castro::construct_old_gravity() 10 3.363e-05 3.764e-05 4.452e-05 0.00% Castro::construct_new_gravity() 10 2.834e-05 3.367e-05 3.83e-05 0.00% Castro::expand_state() 10 1.985e-05 2.225e-05 2.675e-05 0.00% Castro::check_for_nan() 20 2.054e-05 2.315e-05 2.593e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.042e-06 1.416e-05 2.053e-05 0.00% Castro::post_timestep() 10 1.441e-05 1.585e-05 1.829e-05 0.00% Castro::computeInitialDt() 2 3.638e-06 5.646e-06 1.622e-05 0.00% Castro::computeNewDt() 9 8.398e-06 9.718e-06 1.098e-05 0.00% Castro::post_init() 1 8.324e-06 9.786e-06 1.092e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.79e-06 6.644e-06 9.786e-06 0.00% Amr::init() 1 2.093e-06 3.093e-06 7.363e-06 0.00% Amr::InitializeInit() 1 3.094e-06 3.663e-06 6.014e-06 0.00% Amr::initialInit() 1 1.651e-06 1.909e-06 2.545e-06 0.00% Other 257 0.01606 0.01986 0.02363 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.506 3.506 3.507 100.00% Amr::coarseTimeStep() 10 3.262 3.262 3.262 93.04% Amr::timeStep() 10 3.247 3.248 3.25 92.67% Castro::advance() 10 3.23 3.231 3.231 92.15% Castro::subcycle_advance_ctu() 10 3.155 3.159 3.165 90.26% Castro::do_advance_ctu() 10 3.155 3.159 3.165 90.26% Castro::construct_ctu_hydro_source() 10 2.428 2.431 2.435 69.43% Gravity::make_radial_gravity() 21 0.3123 0.3168 0.3264 9.31% Amr::init() 1 0.1977 0.2275 0.2318 6.61% Gravity::get_new_grav_vector() 11 0.2115 0.2135 0.2156 6.15% Amr::initialInit() 1 0.1805 0.2107 0.2151 6.13% AmrLevel::FillPatch() 41 0.1932 0.199 0.2068 5.90% Castro::construct_old_gravity() 10 0.1838 0.1877 0.1958 5.59% Gravity::get_old_grav_vector() 10 0.1831 0.1871 0.1953 5.57% Castro::construct_new_gravity() 10 0.1885 0.1902 0.1924 5.49% Amr::InitializeInit() 1 0.06998 0.1384 0.1874 5.34% Amr::defBaseLevel() 1 0.06997 0.1384 0.1874 5.34% FillPatchIterator::Initialize 41 0.1601 0.1673 0.181 5.16% Castro::initialize_do_advance() 10 0.1623 0.1674 0.1729 4.93% check_for_negative_density() 10 0.03019 0.0578 0.1687 4.81% FillPatchIterator::FillFromLevel0() 41 0.1119 0.1222 0.1439 4.10% FillPatchSingleLevel 41 0.1118 0.1221 0.1437 4.10% Castro::clean_state() 62 0.1156 0.1223 0.1326 3.78% Castro::initData() 1 0.05309 0.09043 0.1294 3.69% FabArray::ParallelCopy() 41 0.08025 0.0909 0.1167 3.33% Castro::expand_state() 10 0.1102 0.1138 0.1167 3.33% Castro::estTimeStep() 21 0.02683 0.07279 0.1146 3.27% Amr::FinalizeInit() 1 0.02741 0.07233 0.1111 3.17% Castro::do_old_sources() 10 0.08658 0.08822 0.08951 2.55% Castro::computeInitialDt() 2 0.002265 0.04725 0.08594 2.45% FabArray::ParallelCopy_finish() 41 0.04147 0.05249 0.08315 2.37% amrex::Copy() 193 0.06221 0.07416 0.08028 2.29% Castro::initialize_advance() 10 0.06212 0.068 0.07262 2.07% Castro::computeTemp() 63 0.06582 0.06788 0.07 2.00% FabArray::setVal() 143 0.06098 0.065 0.06898 1.97% Castro::do_new_sources() 10 0.06139 0.06357 0.06493 1.85% Castro::normalize_species() 62 0.04189 0.04782 0.05712 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04635 0.04786 0.0494 1.41% Castro::reset_internal_energy(Fab) 1008 0.04607 0.04757 0.04908 1.40% FabArray::ParallelCopy_nowait() 41 0.0335 0.03833 0.03996 1.14% Amr::InitAmr() 1 0.0004017 0.004742 0.03454 0.99% DistributionMapping::SFCProcessorMapDoIt() 1 3.37e-05 0.02982 0.03417 0.97% DistributionMapping::LeastUsedCPUs() 1 2.285e-05 0.02981 0.03417 0.97% StateDataPhysBCFunct::() 41 0.02687 0.03114 0.033 0.94% StateData::FillBoundary(geom) 41 0.02673 0.03103 0.0329 0.94% Gravity::interpolate_monopole_grav() 21 0.02704 0.02894 0.03165 0.90% Castro::construct_new_source() 50 0.02826 0.02863 0.02931 0.84% Amr::writePlotFile() 2 0.02471 0.02481 0.02518 0.72% Castro::post_init() 1 0.02411 0.02438 0.02468 0.70% Castro::construct_new_gravity_source() 10 0.02234 0.02284 0.02337 0.67% Castro::finalize_do_advance() 10 0.01631 0.01758 0.02074 0.59% Castro::post_timestep() 10 0.01583 0.01699 0.01878 0.54% Castro::Castro() 1 0.01041 0.01208 0.01612 0.46% VisMF::Write(FabArray) 2 0.01007 0.01115 0.01549 0.44% FabArray::setDomainBndry() 41 0.008888 0.01189 0.01387 0.40% Castro::initMFs() 1 0.006512 0.007963 0.01152 0.33% Castro::apply_source_to_state() 20 0.0107 0.01115 0.01138 0.32% FabArray::Saxpy() 20 0.01066 0.01111 0.01135 0.32% Castro::check_for_nan() 20 0.009376 0.009673 0.01065 0.30% MultiFab::contains_nan() 20 0.009352 0.00965 0.01063 0.30% Castro::computeNewDt() 9 0.00906 0.009074 0.009089 0.26% Castro::construct_old_source() 50 0.006706 0.007943 0.00854 0.24% Castro::construct_old_gravity_source() 10 0.006641 0.007867 0.008465 0.24% AmrLevel::AmrLevel(dm) 1 0.005205 0.005976 0.00798 0.23% Other 257 0.02062 0.02511 0.02988 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-2-gee11254ffc7c) finalized