Initializing AMReX (24.05-3-gc3616816b46a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-3-gc3616816b46a) initialized Starting run at 05:21:33 UTC on 2024-05-06. Successfully read inputs file ... Castro git describe: 24.05 AMReX git describe: 24.05-3-gc3616816b Microphysics git describe: 24.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014774415 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362264944 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344153894 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330045506 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.369971159 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330782951 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332464259 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316284033 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318836116 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314584353 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316450203 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008659185 seconds Ending run at 05:21:37 UTC on 2024-05-06. Run time = 3.568695428 Run time without initialization = 3.349368677 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.568 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2794 2.3740 2.4218 67.86% Gravity::make_radial_gravity() 21 0.2986 0.3093 0.3201 8.97% check_for_negative_density() 10 0.04071 0.0914 0.1871 5.24% Castro::initData() 1 0.05622 0.09386 0.1476 4.14% Castro::estTimeStep() 21 0.02932 0.09038 0.134 3.75% amrex::Copy() 193 0.06879 0.0759 0.08214 2.30% FabArray::ParallelCopy_finish() 41 0.04091 0.05556 0.07771 2.18% FabArray::setVal() 143 0.06304 0.06901 0.07544 2.11% Castro::reset_internal_energy(Fab) 1008 0.04361 0.04669 0.04965 1.39% Castro::normalize_species() 62 0.04176 0.04314 0.0458 1.28% FabArray::ParallelCopy_nowait() 41 0.03577 0.03973 0.04085 1.14% FillPatchIterator::Initialize 41 0.02844 0.03213 0.0346 0.97% StateData::FillBoundary(geom) 41 0.02726 0.03079 0.03327 0.93% Gravity::interpolate_monopole_grav() 21 0.02716 0.02901 0.02992 0.84% Castro::construct_new_gravity_source() 10 0.02319 0.02547 0.02957 0.83% Castro::computeTemp() 63 0.01803 0.01958 0.02092 0.59% Castro::initialize_do_advance() 10 0.0136 0.01706 0.01958 0.55% FabArray::setDomainBndry() 41 0.009832 0.01156 0.01378 0.39% VisMF::Write(FabArray) 2 0.008547 0.009483 0.01317 0.37% FabArray::Saxpy() 20 0.01085 0.01181 0.01269 0.36% Amr::writePlotFile() 2 0.008115 0.01129 0.01228 0.34% Castro::initialize_advance() 10 0.006223 0.009969 0.0121 0.34% MultiFab::contains_nan() 20 0.009257 0.01054 0.0115 0.32% Castro::initMFs() 1 0.008012 0.008334 0.009932 0.28% Castro::construct_old_gravity_source() 10 0.006951 0.00884 0.009511 0.27% Castro::construct_new_source() 50 0.005855 0.006317 0.008259 0.23% Castro::enforce_min_density() 62 0.007172 0.007371 0.007526 0.21% Gravity::get_new_grav_vector() 11 0.003303 0.004036 0.005521 0.15% main() 1 0.003123 0.003707 0.004333 0.12% Amr::coarseTimeStep() 10 0.002057 0.002878 0.003975 0.11% Gravity::get_old_grav_vector() 10 0.001606 0.002006 0.002262 0.06% Castro::finalize_do_advance() 10 0.0003714 0.0008949 0.001074 0.03% AmrLevel::FillPatch() 41 0.0006531 0.0008082 0.0009912 0.03% Amr::timeStep() 10 0.0001776 0.0002186 0.0003929 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002787 0.000292 0.000313 0.01% Castro::do_advance_ctu() 10 0.0001446 0.0001733 0.0001937 0.01% Castro::clean_state() 62 0.0001462 0.0001602 0.0001698 0.00% Castro::Castro() 1 8.102e-05 0.000123 0.0001509 0.00% Amr::defBaseLevel() 1 4.953e-05 6.821e-05 0.0001336 0.00% StateDataPhysBCFunct::() 41 9.368e-05 0.0001106 0.0001243 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001078 0.0001138 0.0001207 0.00% Castro::do_old_sources() 10 7.623e-05 9.611e-05 0.0001095 0.00% FillPatchSingleLevel 41 7.748e-05 8.583e-05 0.0001011 0.00% Amr::FinalizeInit() 1 3.969e-06 1.669e-05 9.357e-05 0.00% Castro::construct_old_source() 50 5.287e-05 7.606e-05 9.148e-05 0.00% FabArray::ParallelCopy() 41 7.356e-05 8.143e-05 9.082e-05 0.00% Castro::do_new_sources() 10 6.009e-05 6.303e-05 6.791e-05 0.00% Castro::subcycle_advance_ctu() 10 4.244e-05 5.162e-05 5.952e-05 0.00% Castro::apply_source_to_state() 20 3.775e-05 4.151e-05 5.134e-05 0.00% Castro::advance() 10 3.589e-05 4.38e-05 4.954e-05 0.00% Castro::construct_old_gravity() 10 3.134e-05 3.693e-05 3.983e-05 0.00% Castro::construct_new_gravity() 10 2.999e-05 3.37e-05 3.849e-05 0.00% Castro::check_for_nan() 20 2.037e-05 2.483e-05 3.115e-05 0.00% Castro::expand_state() 10 2.201e-05 2.564e-05 2.913e-05 0.00% Castro::post_timestep() 10 1.483e-05 1.737e-05 2.1e-05 0.00% Castro::post_init() 1 8.459e-06 1.11e-05 1.631e-05 0.00% Castro::computeNewDt() 9 7.547e-06 1.045e-05 1.312e-05 0.00% Amr::initialInit() 1 1.472e-06 2.518e-06 7.522e-06 0.00% Amr::InitializeInit() 1 2.915e-06 3.916e-06 7.176e-06 0.00% Castro::computeInitialDt() 2 3.518e-06 4.241e-06 4.765e-06 0.00% Amr::init() 1 1.826e-06 2.094e-06 2.593e-06 0.00% Other 199 0.01111 0.01359 0.01509 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.568 3.569 100.00% Amr::coarseTimeStep() 10 3.337 3.337 3.337 93.49% Amr::timeStep() 10 3.322 3.323 3.324 93.14% Castro::advance() 10 3.307 3.307 3.308 92.69% Castro::subcycle_advance_ctu() 10 3.23 3.235 3.239 90.74% Castro::do_advance_ctu() 10 3.23 3.235 3.239 90.74% Castro::construct_ctu_hydro_source() 10 2.484 2.487 2.49 69.78% Gravity::make_radial_gravity() 21 0.3132 0.3243 0.3336 9.35% Gravity::get_new_grav_vector() 11 0.217 0.2188 0.2206 6.18% Amr::init() 1 0.2186 0.2187 0.2188 6.13% AmrLevel::FillPatch() 41 0.1912 0.2012 0.2101 5.89% Amr::initialInit() 1 0.2036 0.2039 0.2042 5.72% Castro::construct_old_gravity() 10 0.1843 0.1912 0.1983 5.56% Gravity::get_old_grav_vector() 10 0.1837 0.1905 0.1971 5.52% Castro::construct_new_gravity() 10 0.1909 0.1925 0.1938 5.43% check_for_negative_density() 10 0.04071 0.0914 0.1871 5.24% FillPatchIterator::Initialize 41 0.1612 0.1703 0.1795 5.03% Amr::InitializeInit() 1 0.07997 0.1182 0.1734 4.86% Amr::defBaseLevel() 1 0.07996 0.1182 0.1734 4.86% Castro::initialize_do_advance() 10 0.1602 0.1664 0.1723 4.83% Castro::initData() 1 0.06025 0.09803 0.1518 4.25% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1266 0.1412 3.96% FillPatchSingleLevel 41 0.1127 0.1264 0.1411 3.95% Castro::estTimeStep() 21 0.02932 0.09038 0.134 3.75% Amr::FinalizeInit() 1 0.03075 0.08577 0.1239 3.47% Castro::clean_state() 62 0.111 0.1163 0.1211 3.39% Castro::expand_state() 10 0.1038 0.1128 0.1186 3.32% FabArray::ParallelCopy() 41 0.08056 0.09546 0.1137 3.18% Castro::computeInitialDt() 2 0.00261 0.05784 0.09608 2.69% Castro::do_old_sources() 10 0.09055 0.09283 0.09514 2.67% amrex::Copy() 193 0.06879 0.0759 0.08214 2.30% FabArray::ParallelCopy_finish() 41 0.04091 0.05556 0.07771 2.18% FabArray::setVal() 143 0.06304 0.06901 0.07544 2.11% Castro::initialize_advance() 10 0.0653 0.06926 0.07422 2.08% Castro::do_new_sources() 10 0.06026 0.06563 0.071 1.99% Castro::computeTemp() 63 0.06192 0.06655 0.07088 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04389 0.04698 0.04996 1.40% Castro::reset_internal_energy(Fab) 1008 0.04361 0.04669 0.04965 1.39% Castro::normalize_species() 62 0.04176 0.04314 0.0458 1.28% FabArray::ParallelCopy_nowait() 41 0.03588 0.03982 0.04093 1.15% Castro::construct_new_source() 50 0.02905 0.03179 0.03783 1.06% StateDataPhysBCFunct::() 41 0.02735 0.0309 0.03338 0.94% StateData::FillBoundary(geom) 41 0.02726 0.03079 0.03327 0.93% Castro::finalize_do_advance() 10 0.01862 0.02439 0.03048 0.85% Gravity::interpolate_monopole_grav() 21 0.02716 0.02901 0.02992 0.84% Castro::construct_new_gravity_source() 10 0.02319 0.02547 0.02957 0.83% Castro::post_init() 1 0.02682 0.02745 0.02779 0.78% Amr::writePlotFile() 2 0.02332 0.02354 0.0237 0.66% Castro::post_timestep() 10 0.01471 0.01581 0.01653 0.46% Castro::Castro() 1 0.01284 0.01324 0.01419 0.40% FabArray::setDomainBndry() 41 0.009832 0.01156 0.01378 0.39% VisMF::Write(FabArray) 2 0.008547 0.009483 0.01317 0.37% Castro::apply_source_to_state() 20 0.01089 0.01186 0.01274 0.36% FabArray::Saxpy() 20 0.01085 0.01181 0.01269 0.36% Castro::check_for_nan() 20 0.009277 0.01057 0.01153 0.32% MultiFab::contains_nan() 20 0.009257 0.01054 0.0115 0.32% Castro::initMFs() 1 0.008012 0.008334 0.009932 0.28% Castro::construct_old_source() 50 0.007004 0.008916 0.009598 0.27% Castro::construct_old_gravity_source() 10 0.006951 0.00884 0.009511 0.27% Castro::computeNewDt() 9 0.009053 0.009063 0.009072 0.25% Castro::enforce_min_density() 62 0.007172 0.007371 0.007526 0.21% Other 199 0.02216 0.02571 0.02983 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 44 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-3-gc3616816b46a) finalized