Initializing AMReX (24.05-5-ga72fb5173b30)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-5-ga72fb5173b30) initialized Starting run at 05:38:18 UTC on 2024-05-07. Successfully read inputs file ... Castro git describe: 24.05-6-g4c1fa8f29 AMReX git describe: 24.05-5-ga72fb5173 Microphysics git describe: 24.05-3-gca9e5320 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01404624 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354087876 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.370881962 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330952286 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.369692914 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330222806 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312890655 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31313144 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313224575 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312939848 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313649348 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007693564 seconds Ending run at 05:38:22 UTC on 2024-05-07. Run time = 3.543862471 Run time without initialization = 3.334064787 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.544 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3576 2.4031 2.4597 69.41% Gravity::make_radial_gravity() 21 0.2921 0.2972 0.3122 8.81% Castro::initData() 1 0.05607 0.09791 0.1439 4.06% check_for_negative_density() 10 0.01811 0.07758 0.1273 3.59% Castro::estTimeStep() 21 0.03353 0.07499 0.1123 3.17% amrex::Copy() 193 0.06025 0.07506 0.08279 2.34% FabArray::ParallelCopy_finish() 41 0.03921 0.04806 0.07738 2.18% FabArray::setVal() 143 0.06077 0.06685 0.07437 2.10% Castro::reset_internal_energy(Fab) 1008 0.04363 0.04683 0.0483 1.36% Castro::normalize_species() 62 0.04118 0.04237 0.04496 1.27% FabArray::ParallelCopy_nowait() 41 0.03278 0.03844 0.04032 1.14% StateData::FillBoundary(geom) 41 0.02999 0.03251 0.03413 0.96% FillPatchIterator::Initialize 41 0.02728 0.03117 0.03328 0.94% Gravity::interpolate_monopole_grav() 21 0.02799 0.02895 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02211 0.02432 0.02708 0.76% Castro::computeTemp() 63 0.01795 0.01945 0.02052 0.58% Castro::initialize_do_advance() 10 0.01281 0.01685 0.01944 0.55% FabArray::setDomainBndry() 41 0.008464 0.01105 0.01316 0.37% FabArray::Saxpy() 20 0.01019 0.01178 0.01268 0.36% Amr::writePlotFile() 2 0.007774 0.01026 0.01212 0.34% Castro::initialize_advance() 10 0.00556 0.009838 0.01207 0.34% VisMF::Write(FabArray) 2 0.008515 0.009154 0.01149 0.32% MultiFab::contains_nan() 20 0.009582 0.01035 0.01115 0.31% Castro::initMFs() 1 0.00722 0.008081 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006368 0.008865 0.009448 0.27% Castro::construct_new_source() 50 0.005393 0.00591 0.006191 0.17% Gravity::get_new_grav_vector() 11 0.00323 0.003792 0.004064 0.11% main() 1 0.003441 0.003699 0.004024 0.11% Amr::coarseTimeStep() 10 0.001503 0.002505 0.003312 0.09% Gravity::get_old_grav_vector() 10 0.001531 0.001978 0.00241 0.07% AmrLevel::FillPatch() 41 0.000691 0.001037 0.001148 0.03% Castro::finalize_do_advance() 10 0.0004256 0.0009448 0.001065 0.03% Amr::timeStep() 10 0.0001535 0.0002164 0.000421 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00028 0.0002943 0.0003057 0.01% Castro::do_advance_ctu() 10 0.000135 0.000162 0.0002044 0.01% Castro::clean_state() 62 0.0001384 0.0001564 0.0001648 0.00% Castro::Castro() 1 9.01e-05 0.0001016 0.0001202 0.00% FillPatchIterator::FillFromLevel0() 41 9.559e-05 0.0001068 0.0001154 0.00% StateDataPhysBCFunct::() 41 9.53e-05 0.0001016 0.0001079 0.00% Castro::do_old_sources() 10 7.926e-05 8.655e-05 0.0001024 0.00% FabArray::ParallelCopy() 41 6.637e-05 7.775e-05 9.657e-05 0.00% Amr::FinalizeInit() 1 3.24e-06 1.548e-05 9.105e-05 0.00% FillPatchSingleLevel 41 7.056e-05 7.485e-05 8.249e-05 0.00% Castro::construct_old_source() 50 6.007e-05 7.196e-05 8.124e-05 0.00% Amr::defBaseLevel() 1 4.55e-05 5.447e-05 6.948e-05 0.00% Castro::do_new_sources() 10 5.361e-05 6.134e-05 6.908e-05 0.00% Castro::subcycle_advance_ctu() 10 4.355e-05 5.107e-05 5.624e-05 0.00% Castro::advance() 10 3.913e-05 4.35e-05 4.982e-05 0.00% Castro::apply_source_to_state() 20 3.269e-05 3.947e-05 4.907e-05 0.00% Castro::construct_new_gravity() 10 2.829e-05 3.557e-05 4.654e-05 0.00% Castro::construct_old_gravity() 10 2.981e-05 3.405e-05 4.115e-05 0.00% Castro::check_for_nan() 20 2.174e-05 2.485e-05 2.732e-05 0.00% Castro::expand_state() 10 2.1e-05 2.3e-05 2.549e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.648e-05 2.154e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.022e-05 1.518e-05 2.038e-05 0.00% Castro::post_init() 1 9.231e-06 1.247e-05 1.692e-05 0.00% Castro::computeNewDt() 9 7.741e-06 9.081e-06 1.132e-05 0.00% Amr::InitializeInit() 1 3.144e-06 4.836e-06 9.987e-06 0.00% Amr::initialInit() 1 1.572e-06 2.681e-06 7.773e-06 0.00% Castro::computeInitialDt() 2 3.246e-06 3.642e-06 3.995e-06 0.00% Amr::init() 1 1.921e-06 2.337e-06 2.918e-06 0.00% Other 260 0.01811 0.02085 0.02443 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.544 3.544 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 93.75% Amr::timeStep() 10 3.309 3.31 3.311 93.42% Castro::advance() 10 3.293 3.294 3.294 92.96% Castro::subcycle_advance_ctu() 10 3.218 3.222 3.231 91.16% Castro::do_advance_ctu() 10 3.218 3.222 3.231 91.16% Castro::construct_ctu_hydro_source() 10 2.499 2.502 2.507 70.73% Gravity::make_radial_gravity() 21 0.3076 0.3128 0.3252 9.18% Gravity::get_new_grav_vector() 11 0.211 0.213 0.2143 6.05% Amr::init() 1 0.2087 0.2091 0.2092 5.90% AmrLevel::FillPatch() 41 0.1784 0.1928 0.2001 5.65% Amr::initialInit() 1 0.1945 0.1949 0.1951 5.51% Castro::construct_old_gravity() 10 0.1761 0.1814 0.1918 5.41% Gravity::get_old_grav_vector() 10 0.1754 0.1807 0.1912 5.40% Castro::construct_new_gravity() 10 0.1866 0.1881 0.1897 5.35% FillPatchIterator::Initialize 41 0.1502 0.1617 0.1763 4.98% Castro::initialize_do_advance() 10 0.1549 0.1629 0.1686 4.76% Amr::InitializeInit() 1 0.07819 0.1211 0.1661 4.69% Amr::defBaseLevel() 1 0.07819 0.1211 0.1661 4.69% Castro::initData() 1 0.05995 0.1017 0.1481 4.18% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1195 0.1406 3.97% FillPatchSingleLevel 41 0.1114 0.1193 0.1405 3.96% check_for_negative_density() 10 0.01811 0.07758 0.1273 3.59% Castro::clean_state() 62 0.1102 0.1155 0.1185 3.34% Amr::FinalizeInit() 1 0.02898 0.07381 0.1169 3.30% Castro::expand_state() 10 0.1002 0.11 0.1151 3.25% Castro::estTimeStep() 21 0.03353 0.07499 0.1123 3.17% FabArray::ParallelCopy() 41 0.07818 0.08666 0.1103 3.11% Castro::do_old_sources() 10 0.08647 0.08933 0.09104 2.57% Castro::computeInitialDt() 2 0.002492 0.0474 0.09039 2.55% amrex::Copy() 193 0.06025 0.07506 0.08279 2.34% FabArray::ParallelCopy_finish() 41 0.03921 0.04806 0.07738 2.18% FabArray::setVal() 143 0.06077 0.06685 0.07437 2.10% Castro::initialize_advance() 10 0.05884 0.06782 0.07239 2.04% Castro::do_new_sources() 10 0.06003 0.06437 0.07124 2.01% Castro::computeTemp() 63 0.06189 0.06658 0.06912 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04393 0.04712 0.0486 1.37% Castro::reset_internal_energy(Fab) 1008 0.04363 0.04683 0.0483 1.36% Castro::normalize_species() 62 0.04118 0.04237 0.04496 1.27% FabArray::ParallelCopy_nowait() 41 0.03287 0.03853 0.0404 1.14% StateDataPhysBCFunct::() 41 0.03009 0.03261 0.03423 0.97% StateData::FillBoundary(geom) 41 0.02999 0.03251 0.03413 0.96% Castro::construct_new_source() 50 0.0275 0.03023 0.03307 0.93% Gravity::interpolate_monopole_grav() 21 0.02799 0.02895 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02211 0.02432 0.02708 0.76% Castro::post_init() 1 0.02581 0.02597 0.02608 0.74% Castro::finalize_do_advance() 10 0.01269 0.0194 0.02374 0.67% Amr::writePlotFile() 2 0.02189 0.02204 0.02246 0.63% Castro::post_timestep() 10 0.01476 0.0158 0.01622 0.46% Castro::Castro() 1 0.01139 0.01227 0.01465 0.41% FabArray::setDomainBndry() 41 0.008464 0.01105 0.01316 0.37% Castro::apply_source_to_state() 20 0.01023 0.01182 0.01273 0.36% FabArray::Saxpy() 20 0.01019 0.01178 0.01268 0.36% VisMF::Write(FabArray) 2 0.008515 0.009154 0.01149 0.32% Castro::check_for_nan() 20 0.009607 0.01037 0.01118 0.32% MultiFab::contains_nan() 20 0.009582 0.01035 0.01115 0.31% Castro::initMFs() 1 0.00722 0.008081 0.01063 0.30% Castro::construct_old_source() 50 0.006428 0.008937 0.009527 0.27% Castro::construct_old_gravity_source() 10 0.006368 0.008865 0.009448 0.27% Castro::computeNewDt() 9 0.009135 0.00915 0.009169 0.26% AmrLevel::AmrLevel(dm) 1 0.005962 0.00662 0.008276 0.23% Other 260 0.0226 0.02635 0.03097 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 43 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-5-ga72fb5173b30) finalized