Initializing AMReX (24.05-8-g739effa5d8ba)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-8-g739effa5d8ba) initialized Starting run at 05:21:32 UTC on 2024-05-08. Successfully read inputs file ... Castro git describe: 24.05-6-g4c1fa8f29 AMReX git describe: 24.05-8-g739effa5d Microphysics git describe: 24.05-3-gca9e5320 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014399544 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362248825 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.379532137 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342076798 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.381338774 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336955824 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.316137085 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313394171 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31399207 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314206242 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314973586 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007435258 seconds Ending run at 05:21:36 UTC on 2024-05-08. Run time = 3.59167819 Run time without initialization = 3.386870393 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.591 ... 3.591 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2873 2.4066 2.4536 68.31% Gravity::make_radial_gravity() 21 0.291 0.3 0.313 8.71% check_for_negative_density() 10 0.04508 0.09675 0.221 6.15% Castro::initData() 1 0.04965 0.09271 0.1407 3.92% Castro::estTimeStep() 21 0.02583 0.08001 0.1234 3.43% amrex::Copy() 193 0.07125 0.07889 0.08467 2.36% FabArray::setVal() 143 0.06458 0.07172 0.08062 2.24% FabArray::ParallelCopy_finish() 41 0.04017 0.05007 0.06161 1.72% Castro::reset_internal_energy(Fab) 1008 0.04358 0.04706 0.04999 1.39% Castro::normalize_species() 62 0.04099 0.04497 0.04992 1.39% FabArray::ParallelCopy_nowait() 41 0.03803 0.04068 0.04263 1.19% StateData::FillBoundary(geom) 41 0.03026 0.03369 0.03926 1.09% FillPatchIterator::Initialize 41 0.02802 0.03231 0.03448 0.96% Gravity::interpolate_monopole_grav() 21 0.02727 0.02894 0.03006 0.84% Castro::construct_new_gravity_source() 10 0.02352 0.02493 0.02718 0.76% Castro::computeTemp() 63 0.01855 0.0199 0.02193 0.61% Castro::initialize_do_advance() 10 0.01493 0.01753 0.01906 0.53% Castro::initialize_advance() 10 0.01043 0.01177 0.01348 0.38% FabArray::setDomainBndry() 41 0.009278 0.01177 0.0133 0.37% FabArray::Saxpy() 20 0.01124 0.01239 0.01315 0.37% MultiFab::contains_nan() 20 0.009935 0.01077 0.01152 0.32% VisMF::Write(FabArray) 2 0.00873 0.009121 0.01147 0.32% Amr::writePlotFile() 2 0.007614 0.009951 0.01053 0.29% Castro::construct_old_gravity_source() 10 0.008418 0.009507 0.01011 0.28% Castro::initMFs() 1 0.006392 0.007027 0.007927 0.22% Castro::construct_new_source() 50 0.005966 0.006209 0.006418 0.18% Gravity::get_new_grav_vector() 11 0.002765 0.003484 0.005203 0.14% Amr::coarseTimeStep() 10 0.002294 0.003281 0.004753 0.13% main() 1 0.003235 0.003435 0.003816 0.11% Gravity::get_old_grav_vector() 10 0.001498 0.002058 0.002602 0.07% Castro::finalize_do_advance() 10 0.001023 0.001075 0.001105 0.03% AmrLevel::FillPatch() 41 0.0007219 0.0008274 0.00102 0.03% Amr::timeStep() 10 0.0001683 0.0002294 0.0004506 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000281 0.0003017 0.0003336 0.01% Castro::clean_state() 62 0.0001452 0.0001678 0.0001909 0.01% Castro::do_advance_ctu() 10 0.0001621 0.0001738 0.0001858 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001061 0.000118 0.0001478 0.00% StateDataPhysBCFunct::() 41 9.524e-05 0.0001057 0.0001243 0.00% Castro::do_old_sources() 10 9.088e-05 9.863e-05 0.0001186 0.00% Amr::FinalizeInit() 1 3.993e-06 1.864e-05 0.0001165 0.00% Castro::Castro() 1 7.625e-05 8.978e-05 0.0001141 0.00% FillPatchSingleLevel 41 7.337e-05 8.313e-05 0.0001043 0.00% FabArray::ParallelCopy() 41 8.077e-05 8.619e-05 9.928e-05 0.00% Castro::construct_old_source() 50 6.748e-05 8.14e-05 9.824e-05 0.00% Castro::do_new_sources() 10 6.254e-05 7.03e-05 7.955e-05 0.00% Castro::subcycle_advance_ctu() 10 4.654e-05 5.636e-05 6.557e-05 0.00% Castro::apply_source_to_state() 20 3.93e-05 4.469e-05 5.277e-05 0.00% Castro::advance() 10 4.439e-05 4.799e-05 5.117e-05 0.00% Castro::construct_old_gravity() 10 3.222e-05 3.889e-05 4.591e-05 0.00% Amr::defBaseLevel() 1 3.953e-05 4.228e-05 4.503e-05 0.00% Castro::construct_new_gravity() 10 3.57e-05 3.849e-05 4.36e-05 0.00% Castro::expand_state() 10 2.256e-05 2.577e-05 3.227e-05 0.00% Castro::check_for_nan() 20 2.226e-05 2.635e-05 3.138e-05 0.00% Castro::post_timestep() 10 1.439e-05 1.655e-05 2.035e-05 0.00% Castro::computeNewDt() 9 8.19e-06 9.283e-06 1.128e-05 0.00% Castro::post_init() 1 8.781e-06 9.751e-06 1.073e-05 0.00% Amr::InitializeInit() 1 2.983e-06 3.729e-06 6.108e-06 0.00% Castro::computeInitialDt() 2 3.336e-06 3.893e-06 4.866e-06 0.00% Amr::init() 1 1.941e-06 2.5e-06 3.375e-06 0.00% Amr::initialInit() 1 1.507e-06 1.799e-06 2.148e-06 0.00% Other 261 0.01754 0.01986 0.02097 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.591 3.591 3.592 100.00% Amr::coarseTimeStep() 10 3.376 3.376 3.376 93.98% Amr::timeStep() 10 3.361 3.362 3.363 93.64% Castro::advance() 10 3.345 3.346 3.347 93.17% Castro::subcycle_advance_ctu() 10 3.262 3.268 3.274 91.16% Castro::do_advance_ctu() 10 3.262 3.268 3.274 91.16% Castro::construct_ctu_hydro_source() 10 2.522 2.526 2.532 70.50% Gravity::make_radial_gravity() 21 0.305 0.3159 0.3281 9.13% check_for_negative_density() 10 0.04508 0.09675 0.221 6.15% Gravity::get_new_grav_vector() 11 0.2094 0.2155 0.2182 6.08% AmrLevel::FillPatch() 41 0.1864 0.2008 0.2125 5.92% Amr::init() 1 0.2041 0.2042 0.2043 5.69% Castro::construct_new_gravity() 10 0.1871 0.1925 0.1945 5.42% Castro::construct_old_gravity() 10 0.1773 0.1847 0.193 5.37% Gravity::get_old_grav_vector() 10 0.1766 0.184 0.1924 5.36% Amr::initialInit() 1 0.1893 0.1896 0.1898 5.28% FillPatchIterator::Initialize 41 0.1572 0.169 0.1781 4.96% Castro::initialize_do_advance() 10 0.1577 0.1682 0.1752 4.88% Amr::InitializeInit() 1 0.06862 0.1137 0.1624 4.52% Amr::defBaseLevel() 1 0.06861 0.1137 0.1624 4.52% Castro::initData() 1 0.054 0.09677 0.145 4.04% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1249 0.1335 3.72% FillPatchSingleLevel 41 0.1132 0.1248 0.1333 3.71% Castro::clean_state() 62 0.1109 0.1189 0.1289 3.59% Castro::estTimeStep() 21 0.02583 0.08001 0.1234 3.43% Castro::expand_state() 10 0.1026 0.1141 0.1217 3.39% Amr::FinalizeInit() 1 0.0269 0.07595 0.1209 3.37% FabArray::ParallelCopy() 41 0.08062 0.09093 0.09982 2.78% Castro::do_old_sources() 10 0.09048 0.0937 0.0977 2.72% Castro::computeInitialDt() 2 0.002341 0.05115 0.09611 2.68% amrex::Copy() 193 0.07125 0.07889 0.08467 2.36% FabArray::setVal() 143 0.06458 0.07172 0.08062 2.24% Castro::initialize_advance() 10 0.06822 0.07404 0.08055 2.24% Castro::computeTemp() 63 0.06245 0.06726 0.07225 2.01% Castro::do_new_sources() 10 0.0612 0.06638 0.07186 2.00% FabArray::ParallelCopy_finish() 41 0.04017 0.05007 0.06161 1.72% Castro::reset_internal_energy(MultiFab) 63 0.04386 0.04736 0.05033 1.40% Castro::reset_internal_energy(Fab) 1008 0.04358 0.04706 0.04999 1.39% Castro::normalize_species() 62 0.04099 0.04497 0.04992 1.39% FabArray::ParallelCopy_nowait() 41 0.03813 0.04078 0.04271 1.19% StateDataPhysBCFunct::() 41 0.03038 0.0338 0.03936 1.10% StateData::FillBoundary(geom) 41 0.03026 0.03369 0.03926 1.09% Castro::construct_new_source() 50 0.02986 0.03114 0.03339 0.93% Gravity::interpolate_monopole_grav() 21 0.02727 0.02894 0.03006 0.84% Castro::construct_new_gravity_source() 10 0.02352 0.02493 0.02718 0.76% Castro::finalize_do_advance() 10 0.01555 0.02091 0.02664 0.74% Castro::post_init() 1 0.02382 0.02421 0.02456 0.68% Amr::writePlotFile() 2 0.022 0.0221 0.02234 0.62% Castro::post_timestep() 10 0.01492 0.01612 0.01738 0.48% FabArray::setDomainBndry() 41 0.009278 0.01177 0.0133 0.37% Castro::apply_source_to_state() 20 0.01128 0.01244 0.0132 0.37% FabArray::Saxpy() 20 0.01124 0.01239 0.01315 0.37% Castro::Castro() 1 0.009364 0.01102 0.01218 0.34% Castro::check_for_nan() 20 0.009966 0.0108 0.01155 0.32% MultiFab::contains_nan() 20 0.009935 0.01077 0.01152 0.32% VisMF::Write(FabArray) 2 0.00873 0.009121 0.01147 0.32% Castro::construct_old_source() 50 0.008486 0.009588 0.01021 0.28% Castro::construct_old_gravity_source() 10 0.008418 0.009507 0.01011 0.28% Castro::computeNewDt() 9 0.009029 0.009046 0.009066 0.25% Castro::initMFs() 1 0.006392 0.007027 0.007927 0.22% Other 261 0.02729 0.03093 0.03326 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-8-g739effa5d8ba) finalized