Initializing AMReX (24.05-13-gc3303094ddf5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-13-gc3303094ddf5) initialized Starting run at 05:28:05 UTC on 2024-05-10. Successfully read inputs file ... Castro git describe: 24.05-6-g4c1fa8f29 AMReX git describe: 24.05-13-gc3303094d Microphysics git describe: 24.05-4-g02e71ba9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015798302 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359746179 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348092708 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347336863 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.366185217 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.34165624 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312228249 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314746334 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314445105 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330254579 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315253066 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007532607 seconds Ending run at 05:28:08 UTC on 2024-05-10. Run time = 3.561027777 Run time without initialization = 3.362200397 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.561 ... 3.561 ... 3.561 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3131 2.3934 2.4512 68.83% Gravity::make_radial_gravity() 21 0.2952 0.3075 0.3201 8.99% check_for_negative_density() 10 0.04673 0.1076 0.1903 5.35% Castro::initData() 1 0.0494 0.09351 0.1316 3.70% Castro::estTimeStep() 21 0.02361 0.06906 0.1252 3.52% amrex::Copy() 193 0.06282 0.07376 0.07932 2.23% FabArray::ParallelCopy_finish() 41 0.04177 0.05211 0.07815 2.19% FabArray::setVal() 143 0.05492 0.06609 0.07416 2.08% Castro::reset_internal_energy(Fab) 1008 0.04325 0.04654 0.04964 1.39% Castro::normalize_species() 62 0.04165 0.04252 0.04395 1.23% FabArray::ParallelCopy_nowait() 41 0.03527 0.03831 0.04017 1.13% StateData::FillBoundary(geom) 41 0.02841 0.0313 0.03469 0.97% FillPatchIterator::Initialize 41 0.02895 0.03182 0.03348 0.94% Gravity::interpolate_monopole_grav() 21 0.02796 0.02907 0.03078 0.86% Castro::construct_new_gravity_source() 10 0.02116 0.02396 0.02608 0.73% Castro::computeTemp() 63 0.01767 0.01934 0.02054 0.58% Castro::initialize_do_advance() 10 0.01143 0.01656 0.01937 0.54% VisMF::Write(FabArray) 2 0.008593 0.009568 0.0135 0.38% FabArray::Saxpy() 20 0.009785 0.0117 0.01268 0.36% Castro::initialize_advance() 10 0.005484 0.009912 0.01244 0.35% Amr::writePlotFile() 2 0.008253 0.01081 0.01174 0.33% FabArray::setDomainBndry() 41 0.008724 0.01031 0.01131 0.32% MultiFab::contains_nan() 20 0.009067 0.01001 0.01083 0.30% Castro::construct_old_gravity_source() 10 0.006355 0.008871 0.009487 0.27% Castro::initMFs() 1 0.006839 0.007412 0.007547 0.21% Castro::construct_new_source() 50 0.005388 0.005848 0.006025 0.17% Gravity::get_new_grav_vector() 11 0.002653 0.003852 0.005339 0.15% main() 1 0.003192 0.003461 0.003652 0.10% Amr::coarseTimeStep() 10 0.001612 0.002474 0.003442 0.10% Gravity::get_old_grav_vector() 10 0.001582 0.001951 0.002379 0.07% Castro::finalize_do_advance() 10 0.0004176 0.0008898 0.001297 0.04% AmrLevel::FillPatch() 41 0.0006714 0.0008013 0.0009155 0.03% Amr::timeStep() 10 0.0001741 0.0002254 0.0004619 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002892 0.0002999 0.0003172 0.01% Castro::do_advance_ctu() 10 0.0001379 0.0001639 0.0001804 0.01% Castro::clean_state() 62 0.0001432 0.0001614 0.0001736 0.00% Amr::defBaseLevel() 1 4.877e-05 7.667e-05 0.0001408 0.00% Castro::Castro() 1 7.706e-05 0.0001032 0.000121 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.0001095 0.0001159 0.00% StateDataPhysBCFunct::() 41 9.264e-05 0.000103 0.0001128 0.00% Castro::do_old_sources() 10 7.104e-05 9.08e-05 0.0001012 0.00% FillPatchSingleLevel 41 7.443e-05 7.866e-05 8.753e-05 0.00% FabArray::ParallelCopy() 41 7.05e-05 7.688e-05 8.346e-05 0.00% Castro::construct_old_source() 50 4.884e-05 6.844e-05 7.832e-05 0.00% Amr::FinalizeInit() 1 3.165e-06 1.295e-05 6.823e-05 0.00% Castro::do_new_sources() 10 5.653e-05 6.103e-05 6.527e-05 0.00% Castro::subcycle_advance_ctu() 10 4.16e-05 5.135e-05 6.042e-05 0.00% Castro::advance() 10 3.58e-05 4.458e-05 5.084e-05 0.00% Castro::apply_source_to_state() 20 3.389e-05 4.089e-05 5.079e-05 0.00% Castro::construct_new_gravity() 10 2.986e-05 3.348e-05 4.171e-05 0.00% Castro::construct_old_gravity() 10 3.161e-05 3.728e-05 4.143e-05 0.00% Castro::check_for_nan() 20 2.098e-05 2.366e-05 2.591e-05 0.00% Castro::expand_state() 10 2.068e-05 2.273e-05 2.488e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.593e-05 1.882e-05 0.00% Castro::computeNewDt() 9 7.721e-06 9.708e-06 1.38e-05 0.00% Castro::post_init() 1 8.004e-06 8.972e-06 9.833e-06 0.00% Amr::InitializeInit() 1 2.927e-06 4.004e-06 5.877e-06 0.00% Castro::computeInitialDt() 2 3.093e-06 3.742e-06 4.382e-06 0.00% Amr::init() 1 1.725e-06 2.146e-06 2.572e-06 0.00% Amr::initialInit() 1 1.443e-06 1.758e-06 2.242e-06 0.00% Other 261 0.01532 0.01861 0.02008 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.561 3.561 3.561 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 94.10% Amr::timeStep() 10 3.337 3.338 3.339 93.76% Castro::advance() 10 3.321 3.322 3.323 93.31% Castro::subcycle_advance_ctu() 10 3.245 3.252 3.266 91.72% Castro::do_advance_ctu() 10 3.245 3.252 3.266 91.72% Castro::construct_ctu_hydro_source() 10 2.519 2.522 2.524 70.87% Gravity::make_radial_gravity() 21 0.3093 0.3228 0.3332 9.36% Gravity::get_new_grav_vector() 11 0.214 0.215 0.2162 6.07% AmrLevel::FillPatch() 41 0.1811 0.1942 0.209 5.87% Castro::construct_old_gravity() 10 0.1826 0.1911 0.1983 5.57% Amr::init() 1 0.1981 0.1982 0.1982 5.57% Gravity::get_old_grav_vector() 10 0.1819 0.1904 0.1973 5.54% Castro::construct_new_gravity() 10 0.1889 0.1898 0.1907 5.35% check_for_negative_density() 10 0.04673 0.1076 0.1903 5.35% Amr::initialInit() 1 0.1822 0.1829 0.1834 5.15% FillPatchIterator::Initialize 41 0.1523 0.1643 0.1833 5.15% Castro::initialize_do_advance() 10 0.152 0.1604 0.167 4.69% Amr::InitializeInit() 1 0.06858 0.1156 0.1539 4.32% Amr::defBaseLevel() 1 0.06858 0.1156 0.1539 4.32% FillPatchIterator::FillFromLevel0() 41 0.1141 0.1222 0.1423 4.00% FillPatchSingleLevel 41 0.114 0.1221 0.1422 3.99% Castro::initData() 1 0.05318 0.09744 0.1353 3.80% Castro::estTimeStep() 21 0.02361 0.06906 0.1252 3.52% Castro::expand_state() 10 0.0982 0.1083 0.1209 3.39% Castro::clean_state() 62 0.1083 0.1138 0.1187 3.33% FabArray::ParallelCopy() 41 0.08043 0.09059 0.1136 3.19% Amr::FinalizeInit() 1 0.02926 0.06731 0.1136 3.19% Castro::do_old_sources() 10 0.08873 0.09151 0.09275 2.60% Castro::computeInitialDt() 2 0.002408 0.04071 0.08761 2.46% amrex::Copy() 193 0.06282 0.07376 0.07932 2.23% FabArray::ParallelCopy_finish() 41 0.04177 0.05211 0.07815 2.19% FabArray::setVal() 143 0.05492 0.06609 0.07416 2.08% Castro::initialize_advance() 10 0.05229 0.06676 0.07354 2.07% Castro::computeTemp() 63 0.06121 0.06618 0.07002 1.97% Castro::do_new_sources() 10 0.05431 0.06294 0.07002 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04354 0.04684 0.04995 1.40% Castro::reset_internal_energy(Fab) 1008 0.04325 0.04654 0.04964 1.39% Castro::normalize_species() 62 0.04165 0.04252 0.04395 1.23% FabArray::ParallelCopy_nowait() 41 0.03537 0.0384 0.04024 1.13% StateDataPhysBCFunct::() 41 0.0285 0.0314 0.0348 0.98% StateData::FillBoundary(geom) 41 0.02841 0.0313 0.03469 0.97% Castro::construct_new_source() 50 0.02655 0.0298 0.03211 0.90% Gravity::interpolate_monopole_grav() 21 0.02796 0.02907 0.03078 0.86% Castro::finalize_do_advance() 10 0.01194 0.01992 0.02872 0.81% Castro::post_init() 1 0.02589 0.0263 0.02673 0.75% Castro::construct_new_gravity_source() 10 0.02116 0.02396 0.02608 0.73% Amr::writePlotFile() 2 0.02244 0.02296 0.02359 0.66% Castro::post_timestep() 10 0.01474 0.0155 0.0161 0.45% VisMF::Write(FabArray) 2 0.008593 0.009568 0.0135 0.38% Castro::apply_source_to_state() 20 0.009819 0.01174 0.01272 0.36% FabArray::Saxpy() 20 0.009785 0.0117 0.01268 0.36% Castro::Castro() 1 0.009751 0.0118 0.01233 0.35% FabArray::setDomainBndry() 41 0.008724 0.01031 0.01131 0.32% Castro::check_for_nan() 20 0.009088 0.01003 0.01086 0.30% MultiFab::contains_nan() 20 0.009067 0.01001 0.01083 0.30% Castro::construct_old_source() 50 0.006404 0.00894 0.00956 0.27% Castro::construct_old_gravity_source() 10 0.006355 0.008871 0.009487 0.27% Castro::computeNewDt() 9 0.009323 0.009339 0.009352 0.26% Castro::initMFs() 1 0.006839 0.007412 0.007547 0.21% Other 261 0.02527 0.0297 0.03211 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-13-gc3303094ddf5) finalized