Initializing AMReX (24.05-17-gaf6e77226cdb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-17-gaf6e77226cdb) initialized Starting run at 05:21:57 UTC on 2024-05-13. Successfully read inputs file ... Castro git describe: 24.05-8-g16ad4929f AMReX git describe: 24.05-17-gaf6e77226 Microphysics git describe: 24.05-5-g87839b75 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014822618 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355908143 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354327041 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337736837 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.377818214 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344054615 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.319897147 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317573698 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316858112 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.318054471 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316806702 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007531981 seconds Ending run at 05:22:01 UTC on 2024-05-13. Run time = 3.576112615 Run time without initialization = 3.371347786 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.575 ... 3.576 ... 3.576 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3896 2.4254 2.4756 69.23% Gravity::make_radial_gravity() 21 0.2959 0.3027 0.3168 8.86% Castro::initData() 1 0.05642 0.09925 0.1386 3.88% Castro::estTimeStep() 21 0.03487 0.06982 0.1192 3.33% check_for_negative_density() 10 0.01757 0.07078 0.1095 3.06% amrex::Copy() 193 0.06518 0.07819 0.08521 2.38% FabArray::ParallelCopy_finish() 41 0.0413 0.0544 0.08324 2.33% FabArray::setVal() 143 0.06272 0.0683 0.0797 2.23% Castro::reset_internal_energy(Fab) 1008 0.04524 0.04729 0.04924 1.38% Castro::normalize_species() 62 0.0412 0.042 0.04325 1.21% FabArray::ParallelCopy_nowait() 41 0.03612 0.0393 0.0406 1.14% FillPatchIterator::Initialize 41 0.02876 0.03259 0.03419 0.96% StateData::FillBoundary(geom) 41 0.02937 0.03138 0.03306 0.92% Gravity::interpolate_monopole_grav() 21 0.02802 0.02908 0.0297 0.83% Castro::construct_new_gravity_source() 10 0.02306 0.02465 0.02773 0.78% Castro::initialize_do_advance() 10 0.01314 0.01766 0.02165 0.61% Castro::computeTemp() 63 0.01847 0.01952 0.02006 0.56% FabArray::setDomainBndry() 41 0.008585 0.01163 0.01363 0.38% Castro::initialize_advance() 10 0.005366 0.009904 0.01294 0.36% FabArray::Saxpy() 20 0.009792 0.01184 0.01255 0.35% VisMF::Write(FabArray) 2 0.00867 0.009576 0.01212 0.34% Amr::writePlotFile() 2 0.007768 0.01079 0.01179 0.33% Castro::initMFs() 1 0.007497 0.008329 0.01062 0.30% MultiFab::contains_nan() 20 0.009488 0.009922 0.01061 0.30% Castro::construct_old_gravity_source() 10 0.006633 0.00896 0.009439 0.26% Castro::construct_new_source() 50 0.00555 0.005894 0.006143 0.17% Gravity::get_new_grav_vector() 11 0.003567 0.004394 0.005947 0.17% main() 1 0.003339 0.003823 0.004123 0.12% Amr::coarseTimeStep() 10 0.001507 0.002301 0.003137 0.09% Gravity::get_old_grav_vector() 10 0.001688 0.002113 0.002631 0.07% Castro::finalize_do_advance() 10 0.0004603 0.001011 0.001471 0.04% AmrLevel::FillPatch() 41 0.0006205 0.0009158 0.001171 0.03% Amr::timeStep() 10 0.0001789 0.0002226 0.0004189 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000283 0.0003003 0.0003173 0.01% Castro::clean_state() 62 0.0001478 0.0001684 0.000208 0.01% Castro::do_advance_ctu() 10 0.0001666 0.0001737 0.0001803 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001072 0.0001165 0.0001252 0.00% Castro::Castro() 1 8.585e-05 0.0001004 0.000124 0.00% StateDataPhysBCFunct::() 41 9.771e-05 0.0001051 0.000113 0.00% Castro::do_old_sources() 10 8.917e-05 9.823e-05 0.0001129 0.00% Castro::construct_old_source() 50 5.95e-05 7.887e-05 0.000105 0.00% FabArray::ParallelCopy() 41 7.989e-05 8.706e-05 9.69e-05 0.00% FillPatchSingleLevel 41 7.385e-05 8.422e-05 9.384e-05 0.00% Amr::FinalizeInit() 1 4.276e-06 1.581e-05 8.906e-05 0.00% Castro::do_new_sources() 10 5.704e-05 6.317e-05 6.704e-05 0.00% Amr::defBaseLevel() 1 4.554e-05 5.772e-05 6.512e-05 0.00% Castro::subcycle_advance_ctu() 10 4.733e-05 5.174e-05 6.096e-05 0.00% Castro::advance() 10 4.201e-05 4.867e-05 5.472e-05 0.00% Castro::apply_source_to_state() 20 3.997e-05 4.48e-05 5.288e-05 0.00% Castro::construct_old_gravity() 10 3.183e-05 3.849e-05 4.401e-05 0.00% Castro::construct_new_gravity() 10 2.759e-05 3.629e-05 4.172e-05 0.00% Castro::expand_state() 10 2.26e-05 2.564e-05 3.379e-05 0.00% Castro::check_for_nan() 20 1.977e-05 2.461e-05 3.059e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.068e-05 1.497e-05 2.039e-05 0.00% Castro::post_init() 1 1.077e-05 1.371e-05 1.919e-05 0.00% Castro::post_timestep() 10 1.406e-05 1.569e-05 1.82e-05 0.00% Castro::computeNewDt() 9 7.546e-06 9.406e-06 1.127e-05 0.00% Amr::InitializeInit() 1 2.974e-06 4.153e-06 8.529e-06 0.00% Castro::computeInitialDt() 2 3.301e-06 4.012e-06 4.509e-06 0.00% Amr::init() 1 1.992e-06 2.458e-06 3.231e-06 0.00% Amr::initialInit() 1 1.567e-06 2.017e-06 3.071e-06 0.00% Other 260 0.01714 0.02018 0.02386 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.575 3.576 3.576 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 93.95% Amr::timeStep() 10 3.346 3.347 3.347 93.61% Castro::advance() 10 3.331 3.331 3.332 93.17% Castro::subcycle_advance_ctu() 10 3.251 3.259 3.267 91.36% Castro::do_advance_ctu() 10 3.251 3.259 3.267 91.36% Castro::construct_ctu_hydro_source() 10 2.515 2.518 2.52 70.48% Gravity::make_radial_gravity() 21 0.3122 0.3191 0.3307 9.25% Gravity::get_new_grav_vector() 11 0.2179 0.2196 0.2224 6.22% AmrLevel::FillPatch() 41 0.188 0.202 0.2127 5.95% Amr::init() 1 0.2037 0.2041 0.2042 5.71% Castro::construct_new_gravity() 10 0.1947 0.1962 0.198 5.54% Castro::construct_old_gravity() 10 0.1799 0.1835 0.1936 5.41% Gravity::get_old_grav_vector() 10 0.1791 0.1829 0.1929 5.39% Amr::initialInit() 1 0.1883 0.1887 0.1893 5.29% FillPatchIterator::Initialize 41 0.157 0.1698 0.187 5.23% Castro::initialize_do_advance() 10 0.1628 0.1704 0.1764 4.93% Amr::InitializeInit() 1 0.07908 0.123 0.1614 4.51% Amr::defBaseLevel() 1 0.07908 0.123 0.1614 4.51% FillPatchIterator::FillFromLevel0() 41 0.1126 0.1256 0.1496 4.18% FillPatchSingleLevel 41 0.1124 0.1255 0.1495 4.18% Castro::initData() 1 0.05992 0.103 0.1426 3.99% Castro::expand_state() 10 0.1054 0.1172 0.1245 3.48% FabArray::ParallelCopy() 41 0.08081 0.09389 0.1196 3.34% Castro::estTimeStep() 21 0.03487 0.06982 0.1192 3.33% Castro::clean_state() 62 0.1103 0.1144 0.1167 3.26% check_for_negative_density() 10 0.01757 0.07078 0.1095 3.06% Amr::FinalizeInit() 1 0.02791 0.06573 0.1093 3.06% Castro::do_old_sources() 10 0.08795 0.09064 0.09306 2.60% amrex::Copy() 193 0.06518 0.07819 0.08521 2.38% Castro::computeInitialDt() 2 0.002827 0.04118 0.08519 2.38% FabArray::ParallelCopy_finish() 41 0.0413 0.0544 0.08324 2.33% FabArray::setVal() 143 0.06272 0.0683 0.0797 2.23% Castro::initialize_advance() 10 0.05977 0.06865 0.07681 2.15% Castro::do_new_sources() 10 0.06036 0.06495 0.07227 2.02% Castro::computeTemp() 63 0.06399 0.0671 0.06959 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04552 0.04759 0.04953 1.39% Castro::reset_internal_energy(Fab) 1008 0.04524 0.04729 0.04924 1.38% Castro::normalize_species() 62 0.0412 0.042 0.04325 1.21% FabArray::ParallelCopy_nowait() 41 0.03627 0.03941 0.04069 1.14% Castro::construct_new_source() 50 0.02885 0.03054 0.03359 0.94% StateDataPhysBCFunct::() 41 0.02947 0.03148 0.03317 0.93% StateData::FillBoundary(geom) 41 0.02937 0.03138 0.03306 0.92% Gravity::interpolate_monopole_grav() 21 0.02802 0.02908 0.0297 0.83% Castro::construct_new_gravity_source() 10 0.02306 0.02465 0.02773 0.78% Castro::finalize_do_advance() 10 0.01287 0.02056 0.02596 0.73% Castro::post_init() 1 0.02413 0.02466 0.0252 0.70% Amr::writePlotFile() 2 0.02246 0.023 0.02347 0.66% Castro::post_timestep() 10 0.01498 0.01544 0.01579 0.44% Castro::Castro() 1 0.01133 0.01249 0.01498 0.42% FabArray::setDomainBndry() 41 0.008585 0.01163 0.01363 0.38% Castro::apply_source_to_state() 20 0.009833 0.01189 0.0126 0.35% FabArray::Saxpy() 20 0.009792 0.01184 0.01255 0.35% VisMF::Write(FabArray) 2 0.00867 0.009576 0.01212 0.34% Castro::check_for_nan() 20 0.009508 0.009947 0.01064 0.30% Castro::initMFs() 1 0.007497 0.008329 0.01062 0.30% MultiFab::contains_nan() 20 0.009488 0.009922 0.01061 0.30% Castro::construct_old_source() 50 0.006693 0.009039 0.009516 0.27% Castro::construct_old_gravity_source() 10 0.006633 0.00896 0.009439 0.26% Castro::computeNewDt() 9 0.009091 0.009105 0.009115 0.25% AmrLevel::AmrLevel(dm) 1 0.006217 0.006981 0.008355 0.23% Other 260 0.02172 0.02566 0.03051 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 47 B 88 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-17-gaf6e77226cdb) finalized