Initializing AMReX (24.05-18-g8eff86d32d17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-18-g8eff86d32d17) initialized Starting run at 05:29:36 UTC on 2024-05-14. Successfully read inputs file ... Castro git describe: 24.05-8-g16ad4929f AMReX git describe: 24.05-18-g8eff86d32 Microphysics git describe: 24.05-5-g87839b75 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014191892 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348865601 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362564659 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329929342 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.366358178 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338900049 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313152407 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314176993 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314471498 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31558226 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31614484 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007494945 seconds Ending run at 05:29:40 UTC on 2024-05-14. Run time = 3.542470817 Run time without initialization = 3.332316796 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.542 ... 3.543 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3441 2.3867 2.4326 68.67% Gravity::make_radial_gravity() 21 0.2902 0.2947 0.3043 8.59% Castro::initData() 1 0.05705 0.09461 0.1431 4.04% check_for_negative_density() 10 0.03477 0.08354 0.1257 3.55% Castro::estTimeStep() 21 0.02239 0.0847 0.1179 3.33% FabArray::ParallelCopy_finish() 41 0.03556 0.05637 0.08814 2.49% amrex::Copy() 193 0.06006 0.07502 0.0834 2.35% FabArray::setVal() 143 0.05979 0.06669 0.07843 2.21% Castro::reset_internal_energy(Fab) 1008 0.04416 0.04644 0.0483 1.36% Castro::normalize_species() 62 0.04115 0.04338 0.04647 1.31% FabArray::ParallelCopy_nowait() 41 0.03372 0.03846 0.03989 1.13% FillPatchIterator::Initialize 41 0.02789 0.0316 0.03509 0.99% StateData::FillBoundary(geom) 41 0.02983 0.03084 0.03254 0.92% Gravity::interpolate_monopole_grav() 21 0.02728 0.02928 0.03091 0.87% Castro::construct_new_gravity_source() 10 0.02281 0.0246 0.02833 0.80% Castro::computeTemp() 63 0.01847 0.01939 0.01993 0.56% Castro::initialize_do_advance() 10 0.01283 0.01663 0.01982 0.56% FabArray::setDomainBndry() 41 0.008438 0.01109 0.01359 0.38% FabArray::Saxpy() 20 0.01013 0.0118 0.01262 0.36% Castro::initialize_advance() 10 0.005567 0.009896 0.01241 0.35% VisMF::Write(FabArray) 2 0.008648 0.009217 0.01181 0.33% Amr::writePlotFile() 2 0.007455 0.01024 0.01161 0.33% MultiFab::contains_nan() 20 0.009057 0.009929 0.01071 0.30% Castro::initMFs() 1 0.006265 0.007707 0.009747 0.28% Castro::construct_old_gravity_source() 10 0.006436 0.008958 0.009658 0.27% Castro::construct_new_source() 50 0.005454 0.005888 0.006169 0.17% Gravity::get_new_grav_vector() 11 0.003307 0.003684 0.003986 0.11% main() 1 0.003578 0.003748 0.003908 0.11% Amr::coarseTimeStep() 10 0.001391 0.002247 0.002912 0.08% Gravity::get_old_grav_vector() 10 0.001796 0.001976 0.00252 0.07% Castro::finalize_do_advance() 10 0.0004341 0.0009146 0.001051 0.03% AmrLevel::FillPatch() 41 0.0006724 0.0008701 0.0009489 0.03% Amr::timeStep() 10 0.0001622 0.0002227 0.0004681 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002809 0.000295 0.0003058 0.01% Castro::do_advance_ctu() 10 0.0001547 0.0001665 0.0001931 0.01% Castro::clean_state() 62 0.0001423 0.0001629 0.0001896 0.01% FillPatchIterator::FillFromLevel0() 41 9.884e-05 0.0001106 0.000128 0.00% StateDataPhysBCFunct::() 41 9.791e-05 0.0001041 0.0001119 0.00% Castro::Castro() 1 6.618e-05 8.142e-05 0.0001028 0.00% Castro::do_old_sources() 10 7.849e-05 9.071e-05 0.0001006 0.00% FillPatchSingleLevel 41 7.499e-05 8.125e-05 9.519e-05 0.00% FabArray::ParallelCopy() 41 7.459e-05 8.084e-05 9.111e-05 0.00% Castro::construct_old_source() 50 5.437e-05 7.055e-05 8.602e-05 0.00% Amr::FinalizeInit() 1 3.817e-06 1.361e-05 7.622e-05 0.00% Castro::do_new_sources() 10 5.547e-05 6.021e-05 6.834e-05 0.00% Amr::defBaseLevel() 1 4.043e-05 4.933e-05 6.726e-05 0.00% Castro::subcycle_advance_ctu() 10 4.859e-05 5.208e-05 5.841e-05 0.00% Castro::advance() 10 4.272e-05 4.619e-05 5.566e-05 0.00% Castro::apply_source_to_state() 20 3.392e-05 4.059e-05 5.283e-05 0.00% Castro::construct_old_gravity() 10 2.962e-05 3.557e-05 4.176e-05 0.00% Castro::construct_new_gravity() 10 2.786e-05 3.271e-05 3.679e-05 0.00% Castro::expand_state() 10 1.876e-05 2.288e-05 2.693e-05 0.00% Castro::check_for_nan() 20 2.15e-05 2.333e-05 2.582e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.548e-06 1.346e-05 2.002e-05 0.00% Castro::post_timestep() 10 1.39e-05 1.536e-05 1.921e-05 0.00% Castro::computeNewDt() 9 7.236e-06 9.148e-06 1.195e-05 0.00% Castro::post_init() 1 7.955e-06 9.34e-06 1.123e-05 0.00% Amr::InitializeInit() 1 2.984e-06 4.04e-06 7.853e-06 0.00% Castro::computeInitialDt() 2 3.304e-06 3.755e-06 4.319e-06 0.00% Amr::init() 1 2.084e-06 2.529e-06 3.455e-06 0.00% Amr::initialInit() 1 1.632e-06 1.984e-06 2.474e-06 0.00% Other 260 0.01592 0.01938 0.02283 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.542 3.543 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 93.75% Amr::timeStep() 10 3.308 3.309 3.309 93.42% Castro::advance() 10 3.292 3.293 3.293 92.97% Castro::subcycle_advance_ctu() 10 3.211 3.221 3.23 91.19% Castro::do_advance_ctu() 10 3.211 3.221 3.23 91.19% Castro::construct_ctu_hydro_source() 10 2.488 2.491 2.495 70.43% Gravity::make_radial_gravity() 21 0.3051 0.3103 0.3165 8.93% Gravity::get_new_grav_vector() 11 0.2117 0.2129 0.2147 6.06% AmrLevel::FillPatch() 41 0.1858 0.1997 0.2132 6.02% Amr::init() 1 0.2091 0.2095 0.2096 5.92% Amr::initialInit() 1 0.1947 0.195 0.1952 5.51% Castro::construct_new_gravity() 10 0.189 0.1904 0.1918 5.41% FillPatchIterator::Initialize 41 0.1524 0.1688 0.1886 5.32% Castro::construct_old_gravity() 10 0.1769 0.1817 0.187 5.28% Gravity::get_old_grav_vector() 10 0.1761 0.181 0.1864 5.26% Castro::initialize_do_advance() 10 0.1592 0.166 0.1724 4.87% Amr::InitializeInit() 1 0.07896 0.1165 0.1684 4.75% Amr::defBaseLevel() 1 0.07896 0.1165 0.1684 4.75% FillPatchIterator::FillFromLevel0() 41 0.1064 0.1261 0.1523 4.30% FillPatchSingleLevel 41 0.1063 0.126 0.1522 4.30% Castro::initData() 1 0.0613 0.09828 0.1469 4.15% check_for_negative_density() 10 0.03477 0.08354 0.1257 3.55% FabArray::ParallelCopy() 41 0.07507 0.095 0.122 3.44% Castro::expand_state() 10 0.1029 0.1141 0.122 3.44% Castro::clean_state() 62 0.1113 0.1147 0.1181 3.33% Castro::estTimeStep() 21 0.02239 0.0847 0.1179 3.33% Amr::FinalizeInit() 1 0.02649 0.07854 0.116 3.28% Castro::do_old_sources() 10 0.08524 0.08967 0.09264 2.62% Castro::computeInitialDt() 2 0.002294 0.05444 0.09204 2.60% FabArray::ParallelCopy_finish() 41 0.03556 0.05637 0.08814 2.49% amrex::Copy() 193 0.06006 0.07502 0.0834 2.35% FabArray::setVal() 143 0.05979 0.06669 0.07843 2.21% Castro::initialize_advance() 10 0.05827 0.06837 0.07826 2.21% Castro::do_new_sources() 10 0.06024 0.06459 0.07401 2.09% Castro::computeTemp() 63 0.06291 0.06612 0.06853 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04444 0.04674 0.0486 1.37% Castro::reset_internal_energy(Fab) 1008 0.04416 0.04644 0.0483 1.36% Castro::normalize_species() 62 0.04115 0.04338 0.04647 1.31% FabArray::ParallelCopy_nowait() 41 0.03382 0.03855 0.03998 1.13% Castro::construct_new_source() 50 0.02826 0.03048 0.03428 0.97% StateDataPhysBCFunct::() 41 0.02994 0.03095 0.03264 0.92% StateData::FillBoundary(geom) 41 0.02983 0.03084 0.03254 0.92% Gravity::interpolate_monopole_grav() 21 0.02728 0.02928 0.03091 0.87% Castro::construct_new_gravity_source() 10 0.02281 0.0246 0.02833 0.80% Castro::finalize_do_advance() 10 0.01214 0.02222 0.02703 0.76% Castro::post_init() 1 0.02346 0.02366 0.02383 0.67% Amr::writePlotFile() 2 0.02196 0.02207 0.02227 0.63% Castro::post_timestep() 10 0.01492 0.01586 0.01673 0.47% Castro::Castro() 1 0.00921 0.01132 0.01378 0.39% FabArray::setDomainBndry() 41 0.008438 0.01109 0.01359 0.38% Castro::apply_source_to_state() 20 0.01016 0.01185 0.01266 0.36% FabArray::Saxpy() 20 0.01013 0.0118 0.01262 0.36% VisMF::Write(FabArray) 2 0.008648 0.009217 0.01181 0.33% Castro::check_for_nan() 20 0.009078 0.009952 0.01074 0.30% MultiFab::contains_nan() 20 0.009057 0.009929 0.01071 0.30% Castro::initMFs() 1 0.006265 0.007707 0.009747 0.28% Castro::construct_old_source() 50 0.006491 0.009029 0.009729 0.27% Castro::construct_old_gravity_source() 10 0.006436 0.008958 0.009658 0.27% Castro::computeNewDt() 9 0.008963 0.00897 0.008977 0.25% AmrLevel::AmrLevel(dm) 1 0.005317 0.006397 0.008102 0.23% Other 260 0.02046 0.02489 0.02934 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-18-g8eff86d32d17) finalized