Initializing AMReX (24.05-18-g8eff86d32d17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-18-g8eff86d32d17) initialized Starting run at 05:22:00 UTC on 2024-05-15. Successfully read inputs file ... Castro git describe: 24.05-8-g16ad4929f AMReX git describe: 24.05-18-g8eff86d32 Microphysics git describe: 24.05-5-g87839b75 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014649335 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354909485 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335418281 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.351367351 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.367612109 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.339194764 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.316466479 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318084681 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318766781 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.32044457 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.321645048 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.064504492 seconds Ending run at 05:22:04 UTC on 2024-05-15. Run time = 3.623141387 Run time without initialization = 3.412674339 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.623 ... 3.623 ... 3.623 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3208 2.4014 2.4558 67.78% Gravity::make_radial_gravity() 21 0.294 0.3006 0.3107 8.58% check_for_negative_density() 10 0.03995 0.0966 0.1797 4.96% Castro::initData() 1 0.04893 0.09257 0.1454 4.01% Castro::estTimeStep() 21 0.02395 0.08394 0.1314 3.63% amrex::Copy() 193 0.06219 0.07447 0.0819 2.26% FabArray::setVal() 143 0.06204 0.06718 0.07345 2.03% FabArray::ParallelCopy_finish() 41 0.0388 0.04991 0.07336 2.02% Amr::writePlotFile() 2 0.06498 0.06709 0.0678 1.87% Castro::normalize_species() 62 0.04186 0.0446 0.05464 1.51% Castro::reset_internal_energy(Fab) 1008 0.04247 0.0461 0.04803 1.33% FabArray::ParallelCopy_nowait() 41 0.03188 0.03851 0.04063 1.12% FillPatchIterator::Initialize 41 0.02739 0.03138 0.03326 0.92% StateData::FillBoundary(geom) 41 0.02792 0.03138 0.03271 0.90% Gravity::interpolate_monopole_grav() 21 0.02705 0.02885 0.02996 0.83% Castro::construct_new_gravity_source() 10 0.02122 0.02395 0.02633 0.73% Castro::computeTemp() 63 0.01739 0.01904 0.02031 0.56% Castro::initialize_do_advance() 10 0.01362 0.01668 0.01958 0.54% VisMF::Write(FabArray) 2 0.008663 0.009351 0.01263 0.35% Castro::initialize_advance() 10 0.005605 0.009748 0.01247 0.34% FabArray::Saxpy() 20 0.01012 0.0117 0.01226 0.34% FabArray::setDomainBndry() 41 0.008198 0.01049 0.01155 0.32% MultiFab::contains_nan() 20 0.009114 0.009949 0.01107 0.31% Castro::construct_old_gravity_source() 10 0.006395 0.008791 0.009316 0.26% Castro::initMFs() 1 0.006603 0.007218 0.007602 0.21% Castro::construct_new_source() 50 0.005414 0.005936 0.006228 0.17% Amr::coarseTimeStep() 10 0.001664 0.004512 0.005894 0.16% Gravity::get_new_grav_vector() 11 0.002934 0.003828 0.005043 0.14% main() 1 0.00324 0.003458 0.003559 0.10% Gravity::get_old_grav_vector() 10 0.001571 0.001959 0.002329 0.06% Castro::finalize_do_advance() 10 0.0003751 0.0009992 0.001288 0.04% AmrLevel::FillPatch() 41 0.0006223 0.0008674 0.001007 0.03% Amr::timeStep() 10 0.0001738 0.0002228 0.0003985 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002788 0.0002908 0.0003104 0.01% Castro::do_advance_ctu() 10 0.0001333 0.0001592 0.0001829 0.01% Castro::clean_state() 62 0.0001458 0.0001561 0.0001658 0.00% FillPatchIterator::FillFromLevel0() 41 9.215e-05 0.0001097 0.000122 0.00% StateDataPhysBCFunct::() 41 8.71e-05 0.0001048 0.0001113 0.00% Castro::construct_old_source() 50 4.907e-05 7.676e-05 0.0001003 0.00% Castro::do_old_sources() 10 7.181e-05 8.891e-05 9.665e-05 0.00% FabArray::ParallelCopy() 41 7.089e-05 8.061e-05 9.268e-05 0.00% Castro::Castro() 1 7.257e-05 8.73e-05 9.233e-05 0.00% FillPatchSingleLevel 41 7.294e-05 8.303e-05 8.874e-05 0.00% Amr::FinalizeInit() 1 3.692e-06 1.35e-05 7.302e-05 0.00% Castro::do_new_sources() 10 5.028e-05 5.943e-05 6.777e-05 0.00% Amr::defBaseLevel() 1 3.686e-05 4.569e-05 6.336e-05 0.00% Castro::subcycle_advance_ctu() 10 3.389e-05 5.263e-05 6.272e-05 0.00% Castro::advance() 10 3.339e-05 4.637e-05 5.414e-05 0.00% Castro::apply_source_to_state() 20 3.748e-05 4.145e-05 5.213e-05 0.00% Castro::construct_old_gravity() 10 2.935e-05 3.619e-05 4.113e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.332e-05 3.821e-05 0.00% Castro::expand_state() 10 2.283e-05 2.519e-05 3.138e-05 0.00% Castro::check_for_nan() 20 2.076e-05 2.283e-05 2.584e-05 0.00% Castro::post_timestep() 10 1.349e-05 1.6e-05 1.964e-05 0.00% Castro::post_init() 1 7.725e-06 9.984e-06 1.76e-05 0.00% Castro::computeNewDt() 9 7.895e-06 1.215e-05 1.66e-05 0.00% Amr::init() 1 1.895e-06 2.973e-06 8.431e-06 0.00% Castro::computeInitialDt() 2 2.849e-06 4.118e-06 6.376e-06 0.00% Amr::InitializeInit() 1 2.783e-06 3.543e-06 5.723e-06 0.00% Amr::initialInit() 1 1.423e-06 1.904e-06 2.45e-06 0.00% Other 261 0.01481 0.01817 0.01952 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.623 3.623 3.623 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 92.31% Amr::timeStep() 10 3.329 3.33 3.333 91.98% Castro::advance() 10 3.314 3.314 3.315 91.48% Castro::subcycle_advance_ctu() 10 3.238 3.242 3.245 89.57% Castro::do_advance_ctu() 10 3.237 3.242 3.245 89.57% Castro::construct_ctu_hydro_source() 10 2.517 2.519 2.522 69.62% Gravity::make_radial_gravity() 21 0.3107 0.3158 0.3238 8.94% Gravity::get_new_grav_vector() 11 0.2112 0.2132 0.215 5.93% Amr::init() 1 0.2098 0.2099 0.2099 5.79% AmrLevel::FillPatch() 41 0.1824 0.1927 0.2015 5.56% Amr::initialInit() 1 0.1949 0.1954 0.1959 5.41% Castro::construct_old_gravity() 10 0.1803 0.1847 0.1914 5.28% Castro::construct_new_gravity() 10 0.1876 0.1895 0.1909 5.27% Gravity::get_old_grav_vector() 10 0.1796 0.184 0.1904 5.26% check_for_negative_density() 10 0.03995 0.0966 0.1797 4.96% FillPatchIterator::Initialize 41 0.1537 0.1621 0.1692 4.67% Amr::InitializeInit() 1 0.06842 0.1135 0.1676 4.63% Amr::defBaseLevel() 1 0.06841 0.1135 0.1676 4.63% Castro::initialize_do_advance() 10 0.1531 0.1605 0.1668 4.60% Castro::initData() 1 0.05293 0.09643 0.1497 4.13% FillPatchIterator::FillFromLevel0() 41 0.1099 0.1203 0.1336 3.69% FillPatchSingleLevel 41 0.1098 0.1202 0.1335 3.68% Castro::estTimeStep() 21 0.02395 0.08394 0.1314 3.63% Castro::clean_state() 62 0.1082 0.1151 0.1282 3.54% Amr::FinalizeInit() 1 0.02822 0.08184 0.1265 3.49% Castro::expand_state() 10 0.1005 0.1087 0.1151 3.18% FabArray::ParallelCopy() 41 0.07839 0.08859 0.1054 2.91% Castro::computeInitialDt() 2 0.002448 0.05653 0.1016 2.80% Castro::do_old_sources() 10 0.08834 0.09025 0.09251 2.55% amrex::Copy() 193 0.06219 0.07447 0.0819 2.26% Amr::writePlotFile() 2 0.0786 0.07907 0.07945 2.19% FabArray::setVal() 143 0.06204 0.06718 0.07345 2.03% FabArray::ParallelCopy_finish() 41 0.0388 0.04991 0.07336 2.02% Castro::initialize_advance() 10 0.06518 0.06822 0.07301 2.01% Castro::do_new_sources() 10 0.05991 0.06434 0.07014 1.94% Castro::computeTemp() 63 0.06015 0.06543 0.06866 1.89% Castro::normalize_species() 62 0.04186 0.0446 0.05464 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04275 0.04639 0.04834 1.33% Castro::reset_internal_energy(Fab) 1008 0.04247 0.0461 0.04803 1.33% FabArray::ParallelCopy_nowait() 41 0.03198 0.0386 0.04072 1.12% StateDataPhysBCFunct::() 41 0.02801 0.03149 0.03282 0.91% StateData::FillBoundary(geom) 41 0.02792 0.03138 0.03271 0.90% Castro::construct_new_source() 50 0.02663 0.02989 0.03256 0.90% Gravity::interpolate_monopole_grav() 21 0.02705 0.02885 0.02996 0.83% Castro::construct_new_gravity_source() 10 0.02122 0.02395 0.02633 0.73% Castro::post_init() 1 0.02438 0.02479 0.02498 0.69% Castro::finalize_do_advance() 10 0.01286 0.01924 0.02346 0.65% Castro::post_timestep() 10 0.01473 0.01573 0.01775 0.49% VisMF::Write(FabArray) 2 0.008663 0.009351 0.01263 0.35% Castro::apply_source_to_state() 20 0.01016 0.01174 0.01232 0.34% FabArray::Saxpy() 20 0.01012 0.0117 0.01226 0.34% Castro::Castro() 1 0.009895 0.01108 0.01187 0.33% FabArray::setDomainBndry() 41 0.008198 0.01049 0.01155 0.32% Castro::check_for_nan() 20 0.009136 0.009971 0.0111 0.31% MultiFab::contains_nan() 20 0.009114 0.009949 0.01107 0.31% Castro::construct_old_source() 50 0.006444 0.008868 0.009395 0.26% Castro::construct_old_gravity_source() 10 0.006395 0.008791 0.009316 0.26% Castro::computeNewDt() 9 0.00916 0.00918 0.009202 0.25% Castro::initMFs() 1 0.006603 0.007218 0.007602 0.21% Other 261 0.02475 0.02929 0.03262 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 38 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-18-g8eff86d32d17) finalized