Initializing AMReX (24.05-18-g8eff86d32d17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-18-g8eff86d32d17) initialized Starting run at 05:21:28 UTC on 2024-05-16. Successfully read inputs file ... Castro git describe: 24.05-8-g16ad4929f AMReX git describe: 24.05-18-g8eff86d32 Microphysics git describe: 24.05-5-g87839b75 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016303044 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.388612546 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.410089442 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.407349515 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.435844831 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.411566925 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.408669537 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.408856865 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.407512359 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.41225028 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.410606477 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012493483 seconds Ending run at 05:21:33 UTC on 2024-05-16. Run time = 4.329025433 Run time without initialization = 4.120932586 Average number of zones advanced per microsecond: 0.636 Average number of zones advanced per microsecond per rank: 0.080 TinyProfiler total time across processes [min...avg...max]: 4.329 ... 4.329 ... 4.329 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.6052 2.8149 3.0274 69.93% check_for_negative_density() 10 0.01788 0.2307 0.4426 10.22% Gravity::make_radial_gravity() 21 0.2927 0.3113 0.3362 7.77% Castro::initData() 1 0.05568 0.09173 0.142 3.28% Castro::estTimeStep() 21 0.02674 0.0818 0.1253 2.89% amrex::Copy() 193 0.09649 0.1116 0.1241 2.87% FabArray::setVal() 143 0.09172 0.09615 0.1006 2.32% Castro::normalize_species() 62 0.04815 0.05597 0.07566 1.75% FabArray::ParallelCopy_finish() 41 0.05244 0.06043 0.07091 1.64% FabArray::ParallelCopy_nowait() 41 0.05843 0.06142 0.0642 1.48% FillPatchIterator::Initialize 41 0.04388 0.05082 0.05798 1.34% Castro::reset_internal_energy(Fab) 1008 0.04629 0.05029 0.05225 1.21% StateData::FillBoundary(geom) 41 0.03396 0.03789 0.04334 1.00% Castro::construct_new_gravity_source() 10 0.02836 0.0308 0.03354 0.77% Gravity::interpolate_monopole_grav() 21 0.02735 0.02902 0.03023 0.70% Castro::initialize_do_advance() 10 0.02291 0.02598 0.0292 0.67% Castro::computeTemp() 63 0.02026 0.02194 0.02398 0.55% FabArray::Saxpy() 20 0.01652 0.01858 0.02095 0.48% FabArray::setDomainBndry() 41 0.01653 0.01767 0.01956 0.45% Castro::initialize_advance() 10 0.0159 0.01649 0.01739 0.40% MultiFab::contains_nan() 20 0.01101 0.01413 0.01681 0.39% VisMF::Write(FabArray) 2 0.009629 0.01156 0.01566 0.36% Castro::construct_old_gravity_source() 10 0.01419 0.01496 0.01563 0.36% Amr::writePlotFile() 2 0.009195 0.01335 0.01524 0.35% Castro::construct_new_source() 50 0.007835 0.008651 0.009402 0.22% Amr::coarseTimeStep() 10 0.0009065 0.005078 0.006389 0.15% main() 1 0.005801 0.006115 0.006374 0.15% Gravity::get_new_grav_vector() 11 0.003666 0.004641 0.005565 0.13% Gravity::get_old_grav_vector() 10 0.002491 0.00307 0.003456 0.08% Castro::finalize_do_advance() 10 0.001045 0.001099 0.001147 0.03% AmrLevel::FillPatch() 41 0.0008758 0.0009492 0.001047 0.02% Amr::timeStep() 10 0.0001706 0.0002878 0.0007106 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003135 0.0003345 0.0003678 0.01% Castro::do_advance_ctu() 10 0.000202 0.0002344 0.000264 0.01% Castro::clean_state() 62 0.0001911 0.0002137 0.0002632 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001477 0.0001621 0.0001891 0.00% Castro::do_old_sources() 10 0.0001279 0.0001441 0.0001839 0.00% Castro::Castro() 1 7.564e-05 0.0001144 0.000178 0.00% Castro::construct_old_source() 50 0.0001046 0.0001225 0.0001507 0.00% StateDataPhysBCFunct::() 41 0.0001273 0.0001387 0.0001457 0.00% FabArray::ParallelCopy() 41 0.0001109 0.0001224 0.0001434 0.00% Amr::defBaseLevel() 1 3.803e-05 5.506e-05 0.000134 0.00% FillPatchSingleLevel 41 0.0001017 0.0001163 0.0001337 0.00% Castro::do_new_sources() 10 7.375e-05 8.719e-05 0.0001001 0.00% Amr::FinalizeInit() 1 3.422e-06 1.534e-05 9.281e-05 0.00% Castro::subcycle_advance_ctu() 10 5.962e-05 7.792e-05 9.12e-05 0.00% Castro::apply_source_to_state() 20 5.904e-05 6.629e-05 8.467e-05 0.00% Castro::advance() 10 5.285e-05 6.445e-05 8.319e-05 0.00% Castro::expand_state() 10 3.345e-05 4.601e-05 6.282e-05 0.00% Castro::construct_old_gravity() 10 4.203e-05 4.681e-05 5.267e-05 0.00% Castro::construct_new_gravity() 10 2.973e-05 4.131e-05 5.116e-05 0.00% Castro::check_for_nan() 20 2.496e-05 2.867e-05 3.463e-05 0.00% Castro::post_timestep() 10 1.573e-05 1.919e-05 2.454e-05 0.00% Castro::computeNewDt() 9 7.521e-06 9.325e-06 1.12e-05 0.00% Castro::post_init() 1 7.774e-06 8.798e-06 1.022e-05 0.00% Amr::initialInit() 1 1.392e-06 2.437e-06 7.76e-06 0.00% Amr::InitializeInit() 1 2.855e-06 3.598e-06 6.766e-06 0.00% Castro::computeInitialDt() 2 3.029e-06 3.599e-06 4.155e-06 0.00% Amr::init() 1 2.046e-06 2.643e-06 3.526e-06 0.00% Other 262 0.02341 0.02727 0.02934 0.68% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.329 4.329 4.329 100.00% Amr::coarseTimeStep() 10 4.102 4.102 4.102 94.76% Amr::timeStep() 10 4.086 4.087 4.091 94.50% Castro::advance() 10 4.068 4.068 4.069 93.99% Castro::subcycle_advance_ctu() 10 3.96 3.965 3.967 91.64% Castro::do_advance_ctu() 10 3.959 3.965 3.967 91.64% Castro::construct_ctu_hydro_source() 10 3.064 3.07 3.076 71.04% check_for_negative_density() 10 0.01788 0.2307 0.4426 10.22% Gravity::make_radial_gravity() 21 0.3122 0.3323 0.3584 8.28% AmrLevel::FillPatch() 41 0.2586 0.2766 0.294 6.79% FillPatchIterator::Initialize 41 0.2199 0.2289 0.2397 5.54% Castro::initialize_do_advance() 10 0.2074 0.2264 0.2391 5.52% Gravity::get_new_grav_vector() 11 0.2205 0.2272 0.23 5.31% Castro::construct_old_gravity() 10 0.1955 0.2055 0.2259 5.22% Gravity::get_old_grav_vector() 10 0.1945 0.2046 0.2251 5.20% Castro::construct_new_gravity() 10 0.1995 0.2051 0.2078 4.80% Amr::init() 1 0.2073 0.2075 0.2076 4.79% Amr::initialInit() 1 0.1906 0.191 0.1913 4.42% Castro::expand_state() 10 0.1359 0.1567 0.1706 3.94% FillPatchIterator::FillFromLevel0() 41 0.1528 0.1604 0.1682 3.89% FillPatchSingleLevel 41 0.1527 0.1602 0.1681 3.88% Amr::InitializeInit() 1 0.07802 0.1139 0.1645 3.80% Amr::defBaseLevel() 1 0.07802 0.1139 0.1645 3.80% Castro::clean_state() 62 0.1263 0.135 0.1585 3.66% Castro::initData() 1 0.05953 0.09595 0.1461 3.37% Castro::do_old_sources() 10 0.1306 0.1349 0.1383 3.19% FabArray::ParallelCopy() 41 0.1147 0.1221 0.1324 3.06% Castro::estTimeStep() 21 0.02674 0.0818 0.1253 2.89% amrex::Copy() 193 0.09649 0.1116 0.1241 2.87% Amr::FinalizeInit() 1 0.02656 0.07709 0.1132 2.61% Castro::initialize_advance() 10 0.09625 0.09843 0.104 2.40% FabArray::setVal() 143 0.09172 0.09615 0.1006 2.32% Castro::computeInitialDt() 2 0.002307 0.05297 0.08895 2.05% Castro::do_new_sources() 10 0.0746 0.08081 0.08871 2.05% Castro::computeTemp() 63 0.06687 0.07256 0.07659 1.77% Castro::normalize_species() 62 0.04815 0.05597 0.07566 1.75% FabArray::ParallelCopy_finish() 41 0.05244 0.06043 0.07091 1.64% FabArray::ParallelCopy_nowait() 41 0.05855 0.06155 0.06434 1.49% Castro::reset_internal_energy(MultiFab) 63 0.0466 0.05062 0.05261 1.22% Castro::reset_internal_energy(Fab) 1008 0.04629 0.05029 0.05225 1.21% StateDataPhysBCFunct::() 41 0.03408 0.03803 0.04349 1.00% StateData::FillBoundary(geom) 41 0.03396 0.03789 0.04334 1.00% Castro::construct_new_source() 50 0.0362 0.03945 0.0427 0.99% Castro::construct_new_gravity_source() 10 0.02836 0.0308 0.03354 0.77% Gravity::interpolate_monopole_grav() 21 0.02735 0.02902 0.03023 0.70% Amr::writePlotFile() 2 0.02887 0.02902 0.02939 0.68% Castro::finalize_do_advance() 10 0.01222 0.02084 0.02826 0.65% Castro::post_init() 1 0.02294 0.02349 0.02382 0.55% Castro::post_timestep() 10 0.01688 0.01826 0.02199 0.51% Castro::apply_source_to_state() 20 0.01658 0.01865 0.02102 0.49% FabArray::Saxpy() 20 0.01652 0.01858 0.02095 0.48% FabArray::setDomainBndry() 41 0.01653 0.01767 0.01956 0.45% Castro::check_for_nan() 20 0.01103 0.01416 0.01685 0.39% MultiFab::contains_nan() 20 0.01101 0.01413 0.01681 0.39% Castro::construct_old_source() 50 0.0143 0.01508 0.01575 0.36% VisMF::Write(FabArray) 2 0.009629 0.01156 0.01566 0.36% Castro::construct_old_gravity_source() 10 0.01419 0.01496 0.01563 0.36% Castro::Castro() 1 0.00919 0.01168 0.01216 0.28% Castro::computeNewDt() 9 0.009095 0.009104 0.009117 0.21% Other 262 0.03456 0.04001 0.0432 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-18-g8eff86d32d17) finalized