Initializing AMReX (24.05-18-g8eff86d32d17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-18-g8eff86d32d17) initialized Starting run at 05:22:04 UTC on 2024-05-17. Successfully read inputs file ... Castro git describe: 24.05-9-g9f9368f1a AMReX git describe: 24.05-18-g8eff86d32 Microphysics git describe: 24.05-6-g1028285f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.39174818 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356708798 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.323904895 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.359314716 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342029438 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.317622111 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.314299259 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31457284 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315569067 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316780811 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.322686718 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007709924 seconds Ending run at 05:22:08 UTC on 2024-05-17. Run time = 3.882830847 Run time without initialization = 3.295698493 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.883 ... 3.883 ... 3.883 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3551 2.3817 2.4261 62.48% Amr::writePlotFile() 2 0.3845 0.3879 0.389 10.02% Gravity::make_radial_gravity() 21 0.2874 0.2921 0.2959 7.62% Castro::initData() 1 0.05721 0.09505 0.1433 3.69% Castro::estTimeStep() 21 0.03691 0.08665 0.1289 3.32% check_for_negative_density() 10 0.02588 0.07225 0.09903 2.55% amrex::Copy() 193 0.06577 0.06946 0.07568 1.95% FabArray::setVal() 143 0.0553 0.0647 0.07515 1.94% FabArray::ParallelCopy_finish() 41 0.04209 0.05407 0.06884 1.77% Castro::normalize_species() 62 0.04158 0.04684 0.05574 1.44% Castro::reset_internal_energy(Fab) 1008 0.04315 0.04607 0.04719 1.22% FabArray::ParallelCopy_nowait() 41 0.03494 0.03643 0.03781 0.97% FillPatchIterator::Initialize 41 0.02964 0.03082 0.03186 0.82% StateData::FillBoundary(geom) 41 0.02823 0.02993 0.03136 0.81% Gravity::interpolate_monopole_grav() 21 0.02708 0.02881 0.02958 0.76% Castro::construct_new_gravity_source() 10 0.02126 0.02299 0.02641 0.68% Castro::computeTemp() 63 0.01827 0.01973 0.02049 0.53% Castro::initialize_do_advance() 10 0.0145 0.01514 0.01698 0.44% VisMF::Write(FabArray) 2 0.008648 0.009576 0.01268 0.33% FabArray::Saxpy() 20 0.01032 0.0107 0.01112 0.29% FabArray::setDomainBndry() 41 0.009055 0.009689 0.01042 0.27% MultiFab::contains_nan() 20 0.008649 0.009549 0.01028 0.26% Castro::initialize_advance() 10 0.006428 0.007296 0.01022 0.26% Castro::construct_old_gravity_source() 10 0.007658 0.008134 0.008725 0.22% Castro::initMFs() 1 0.00639 0.007133 0.007465 0.19% Castro::construct_new_source() 50 0.005442 0.005736 0.005899 0.15% Amr::coarseTimeStep() 10 0.00235 0.004151 0.005105 0.13% main() 1 0.003245 0.003442 0.003669 0.09% Gravity::get_new_grav_vector() 11 0.002934 0.003304 0.003569 0.09% Gravity::get_old_grav_vector() 10 0.001711 0.001847 0.002186 0.06% AmrLevel::FillPatch() 41 0.0006588 0.000726 0.0007977 0.02% Castro::finalize_do_advance() 10 0.0005442 0.0006776 0.0007782 0.02% Amr::timeStep() 10 0.0001678 0.0002232 0.0004493 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002841 0.0002971 0.000315 0.01% Castro::Castro() 1 7.019e-05 0.0001077 0.0002529 0.01% Castro::do_advance_ctu() 10 0.0001409 0.0001652 0.000187 0.00% Castro::clean_state() 62 0.0001489 0.0001575 0.0001682 0.00% StateDataPhysBCFunct::() 41 9.19e-05 0.000103 0.0001499 0.00% FillPatchIterator::FillFromLevel0() 41 9.966e-05 0.0001121 0.0001376 0.00% Castro::do_old_sources() 10 7.709e-05 9.199e-05 0.000103 0.00% FillPatchSingleLevel 41 7.447e-05 8.169e-05 9.098e-05 0.00% FabArray::ParallelCopy() 41 7.336e-05 8.048e-05 8.951e-05 0.00% Castro::construct_old_source() 50 5.725e-05 6.659e-05 7.477e-05 0.00% Amr::FinalizeInit() 1 3.883e-06 1.374e-05 7.063e-05 0.00% Castro::do_new_sources() 10 5.102e-05 5.825e-05 6.492e-05 0.00% Castro::apply_source_to_state() 20 3.645e-05 4.328e-05 6.106e-05 0.00% Castro::advance() 10 3.643e-05 4.516e-05 5.8e-05 0.00% Castro::subcycle_advance_ctu() 10 4.022e-05 4.616e-05 5.521e-05 0.00% Amr::defBaseLevel() 1 3.886e-05 4.569e-05 5.518e-05 0.00% Castro::construct_new_gravity() 10 2.988e-05 3.488e-05 4.561e-05 0.00% Castro::construct_old_gravity() 10 3.078e-05 3.731e-05 4.089e-05 0.00% Castro::expand_state() 10 2.043e-05 2.361e-05 2.719e-05 0.00% Castro::check_for_nan() 20 2.048e-05 2.188e-05 2.287e-05 0.00% Castro::post_timestep() 10 1.436e-05 1.72e-05 2.13e-05 0.00% Castro::post_init() 1 7.535e-06 9.188e-06 1.535e-05 0.00% Castro::computeNewDt() 9 7.76e-06 8.913e-06 1.089e-05 0.00% Amr::InitializeInit() 1 3.021e-06 3.758e-06 6.661e-06 0.00% Castro::computeInitialDt() 2 3.493e-06 4.016e-06 4.881e-06 0.00% Amr::init() 1 1.958e-06 2.15e-06 2.355e-06 0.00% Amr::initialInit() 1 1.404e-06 1.765e-06 2.023e-06 0.00% Other 261 0.01579 0.01813 0.01966 0.51% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.882 3.883 3.883 100.00% Amr::coarseTimeStep() 10 3.284 3.284 3.284 84.59% Amr::timeStep() 10 3.269 3.27 3.272 84.26% Castro::advance() 10 3.253 3.253 3.254 83.80% Castro::subcycle_advance_ctu() 10 3.176 3.184 3.193 82.22% Castro::do_advance_ctu() 10 3.176 3.184 3.193 82.22% Castro::construct_ctu_hydro_source() 10 2.473 2.475 2.477 63.79% Amr::init() 1 0.5864 0.5865 0.5866 15.11% Amr::writePlotFile() 2 0.3995 0.3999 0.4004 10.31% Gravity::make_radial_gravity() 21 0.3005 0.3068 0.3103 7.99% Gravity::get_new_grav_vector() 11 0.2057 0.2077 0.2113 5.44% AmrLevel::FillPatch() 41 0.1828 0.1897 0.2012 5.18% Amr::initialInit() 1 0.194 0.1944 0.1949 5.02% Castro::construct_new_gravity() 10 0.1801 0.1826 0.1864 4.80% Castro::construct_old_gravity() 10 0.1753 0.1789 0.182 4.69% Gravity::get_old_grav_vector() 10 0.1746 0.1782 0.1814 4.67% FillPatchIterator::Initialize 41 0.1523 0.1614 0.1735 4.47% Castro::initialize_do_advance() 10 0.152 0.1593 0.1666 4.29% Amr::InitializeInit() 1 0.0797 0.1165 0.1653 4.26% Amr::defBaseLevel() 1 0.0797 0.1165 0.1653 4.26% Castro::initData() 1 0.06166 0.09915 0.1474 3.80% FillPatchIterator::FillFromLevel0() 41 0.1114 0.1209 0.1334 3.44% FillPatchSingleLevel 41 0.1113 0.1208 0.1333 3.43% Castro::estTimeStep() 21 0.03691 0.08665 0.1289 3.32% Castro::clean_state() 62 0.1127 0.1178 0.1283 3.31% Castro::expand_state() 10 0.09957 0.1097 0.1174 3.02% Amr::FinalizeInit() 1 0.02954 0.0779 0.1145 2.95% FabArray::ParallelCopy() 41 0.08008 0.09067 0.1048 2.70% check_for_negative_density() 10 0.02588 0.07225 0.09903 2.55% Castro::computeInitialDt() 2 0.002691 0.05144 0.08829 2.27% Castro::do_old_sources() 10 0.08332 0.08529 0.08809 2.27% amrex::Copy() 193 0.06577 0.06946 0.07568 1.95% FabArray::setVal() 143 0.0553 0.0647 0.07515 1.94% Castro::initialize_advance() 10 0.05709 0.06529 0.07372 1.90% Castro::do_new_sources() 10 0.05723 0.06264 0.07215 1.86% FabArray::ParallelCopy_finish() 41 0.04209 0.05407 0.06884 1.77% Castro::computeTemp() 63 0.06172 0.0661 0.0678 1.75% Castro::normalize_species() 62 0.04158 0.04684 0.05574 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04345 0.04636 0.04749 1.22% Castro::reset_internal_energy(Fab) 1008 0.04315 0.04607 0.04719 1.22% FabArray::ParallelCopy_nowait() 41 0.03501 0.03652 0.03789 0.98% Castro::finalize_do_advance() 10 0.01345 0.02683 0.03359 0.87% Castro::construct_new_source() 50 0.02686 0.02873 0.03224 0.83% StateDataPhysBCFunct::() 41 0.02833 0.03004 0.03145 0.81% StateData::FillBoundary(geom) 41 0.02823 0.02993 0.03136 0.81% Gravity::interpolate_monopole_grav() 21 0.02708 0.02881 0.02958 0.76% Castro::construct_new_gravity_source() 10 0.02126 0.02299 0.02641 0.68% Castro::post_init() 1 0.02571 0.02609 0.0264 0.68% Castro::post_timestep() 10 0.01548 0.01655 0.01882 0.48% VisMF::Write(FabArray) 2 0.008648 0.009576 0.01268 0.33% Castro::Castro() 1 0.009415 0.01119 0.01191 0.31% Castro::apply_source_to_state() 20 0.01036 0.01074 0.01117 0.29% FabArray::Saxpy() 20 0.01032 0.0107 0.01112 0.29% FabArray::setDomainBndry() 41 0.009055 0.009689 0.01042 0.27% Castro::check_for_nan() 20 0.008671 0.00957 0.01031 0.27% MultiFab::contains_nan() 20 0.008649 0.009549 0.01028 0.26% Castro::computeNewDt() 9 0.009055 0.009074 0.009088 0.23% Castro::construct_old_source() 50 0.007715 0.008201 0.00879 0.23% Castro::construct_old_gravity_source() 10 0.007658 0.008134 0.008725 0.22% Castro::initMFs() 1 0.00639 0.007133 0.007465 0.19% Other 261 0.02545 0.02933 0.03194 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-18-g8eff86d32d17) finalized