Initializing AMReX (24.05-20-g5d02c6480a0d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-20-g5d02c6480a0d) initialized Starting run at 05:22:49 UTC on 2024-05-20. Successfully read inputs file ... Castro git describe: 24.05-10-ge883e067e AMReX git describe: 24.05-20-g5d02c6480 Microphysics git describe: 24.05-9-gd99de4ab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014602463 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357251552 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349209325 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332566151 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.366576981 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365620638 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.318749681 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312471523 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313357241 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311797417 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312472629 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.057127903 seconds Ending run at 05:22:53 UTC on 2024-05-20. Run time = 3.602122793 Run time without initialization = 3.401491131 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.602 ... 3.602 ... 3.602 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3701 2.3997 2.4435 67.83% Gravity::make_radial_gravity() 21 0.2987 0.3044 0.3173 8.81% Castro::initData() 1 0.05584 0.09228 0.1311 3.64% Castro::estTimeStep() 21 0.03008 0.07365 0.1143 3.17% check_for_negative_density() 10 0.03964 0.08393 0.1136 3.15% FabArray::ParallelCopy_finish() 41 0.04446 0.05924 0.09162 2.54% amrex::Copy() 193 0.06134 0.07547 0.08181 2.27% FabArray::setVal() 143 0.06066 0.06613 0.07456 2.07% Amr::writePlotFile() 2 0.0575 0.05995 0.06234 1.73% Castro::reset_internal_energy(Fab) 1008 0.04405 0.04645 0.05115 1.42% Castro::normalize_species() 62 0.04147 0.04206 0.04345 1.21% FabArray::ParallelCopy_nowait() 41 0.03282 0.03818 0.04035 1.12% FillPatchIterator::Initialize 41 0.0273 0.03128 0.03331 0.92% StateData::FillBoundary(geom) 41 0.02866 0.03077 0.03264 0.91% Gravity::interpolate_monopole_grav() 21 0.02736 0.02892 0.02955 0.82% Castro::construct_new_gravity_source() 10 0.02268 0.02384 0.0263 0.73% Castro::computeTemp() 63 0.01843 0.0192 0.02042 0.57% Castro::initialize_do_advance() 10 0.0126 0.01648 0.0192 0.53% FabArray::setDomainBndry() 41 0.008242 0.01105 0.01345 0.37% MultiFab::contains_nan() 20 0.008924 0.01011 0.01305 0.36% FabArray::Saxpy() 20 0.01015 0.01162 0.01282 0.36% Castro::initialize_advance() 10 0.005369 0.009856 0.01222 0.34% VisMF::Write(FabArray) 2 0.008143 0.009279 0.01177 0.33% Castro::initMFs() 1 0.007665 0.00865 0.0112 0.31% Castro::construct_old_gravity_source() 10 0.00656 0.008769 0.009383 0.26% Castro::construct_new_source() 50 0.005581 0.005866 0.006129 0.17% Gravity::get_new_grav_vector() 11 0.00314 0.003915 0.005685 0.16% main() 1 0.003106 0.003428 0.003586 0.10% Amr::coarseTimeStep() 10 0.001478 0.002004 0.002473 0.07% Gravity::get_old_grav_vector() 10 0.0016 0.002017 0.002375 0.07% AmrLevel::FillPatch() 41 0.000642 0.0009863 0.00113 0.03% Castro::finalize_do_advance() 10 0.0003568 0.0009218 0.001077 0.03% Amr::timeStep() 10 0.0001523 0.0002139 0.0004397 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002774 0.000299 0.0003678 0.01% Castro::do_advance_ctu() 10 0.000144 0.0001582 0.000182 0.01% Castro::clean_state() 62 0.0001482 0.0001569 0.0001676 0.00% Castro::Castro() 1 9.457e-05 0.000107 0.0001312 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001032 0.0001107 0.0001234 0.00% StateDataPhysBCFunct::() 41 9.222e-05 0.0001046 0.0001179 0.00% Castro::do_old_sources() 10 7.277e-05 9.131e-05 0.0001005 0.00% Amr::FinalizeInit() 1 3.849e-06 1.604e-05 9.735e-05 0.00% FabArray::ParallelCopy() 41 7.488e-05 8.262e-05 9.501e-05 0.00% FillPatchSingleLevel 41 7.702e-05 8.238e-05 9.279e-05 0.00% Castro::construct_old_source() 50 4.813e-05 7.162e-05 9.23e-05 0.00% Castro::do_new_sources() 10 5.23e-05 5.98e-05 7.683e-05 0.00% Amr::defBaseLevel() 1 4.672e-05 6.103e-05 7.361e-05 0.00% Castro::subcycle_advance_ctu() 10 4.278e-05 5.015e-05 6.004e-05 0.00% Castro::advance() 10 4.025e-05 4.424e-05 5.149e-05 0.00% Castro::apply_source_to_state() 20 3.733e-05 4.119e-05 4.76e-05 0.00% Castro::construct_old_gravity() 10 3.055e-05 3.528e-05 4.302e-05 0.00% Castro::construct_new_gravity() 10 2.511e-05 3.251e-05 3.981e-05 0.00% Castro::check_for_nan() 20 2.022e-05 2.451e-05 3.249e-05 0.00% Castro::expand_state() 10 2.042e-05 2.395e-05 2.858e-05 0.00% Castro::post_timestep() 10 1.439e-05 1.788e-05 2.3e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.739e-06 1.344e-05 2.011e-05 0.00% Castro::post_init() 1 8.139e-06 1.049e-05 1.341e-05 0.00% Castro::computeNewDt() 9 7.757e-06 9.117e-06 1.054e-05 0.00% Amr::init() 1 2.246e-06 3.319e-06 8.445e-06 0.00% Amr::InitializeInit() 1 2.833e-06 4.236e-06 6.284e-06 0.00% Castro::computeInitialDt() 2 3.195e-06 3.658e-06 4.226e-06 0.00% Amr::initialInit() 1 1.684e-06 1.944e-06 2.327e-06 0.00% Other 260 0.01716 0.0198 0.02297 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.602 3.602 3.602 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 92.75% Amr::timeStep() 10 3.328 3.329 3.329 92.42% Castro::advance() 10 3.313 3.313 3.314 91.99% Castro::subcycle_advance_ctu() 10 3.237 3.243 3.251 90.25% Castro::do_advance_ctu() 10 3.237 3.243 3.251 90.25% Castro::construct_ctu_hydro_source() 10 2.503 2.504 2.507 69.60% Gravity::make_radial_gravity() 21 0.3153 0.3205 0.3301 9.16% AmrLevel::FillPatch() 41 0.1881 0.2015 0.2142 5.95% Gravity::get_new_grav_vector() 11 0.2089 0.2104 0.2122 5.89% Castro::construct_old_gravity() 10 0.1894 0.1943 0.2032 5.64% Gravity::get_old_grav_vector() 10 0.1883 0.1936 0.2026 5.62% Amr::init() 1 0.1997 0.1999 0.2 5.55% Castro::construct_new_gravity() 10 0.1866 0.1879 0.1893 5.25% FillPatchIterator::Initialize 41 0.1585 0.171 0.1891 5.25% Amr::initialInit() 1 0.185 0.1853 0.1855 5.15% Castro::initialize_do_advance() 10 0.1604 0.1649 0.1691 4.69% Amr::InitializeInit() 1 0.07848 0.1162 0.1588 4.41% Amr::defBaseLevel() 1 0.07847 0.1162 0.1588 4.41% FillPatchIterator::FillFromLevel0() 41 0.1135 0.1287 0.1536 4.26% FillPatchSingleLevel 41 0.1134 0.1285 0.1535 4.26% Castro::initData() 1 0.05945 0.096 0.1348 3.74% FabArray::ParallelCopy() 41 0.08236 0.09759 0.1246 3.46% Castro::clean_state() 62 0.1097 0.1133 0.119 3.30% Castro::expand_state() 10 0.1062 0.1123 0.1171 3.25% Castro::estTimeStep() 21 0.03008 0.07365 0.1143 3.17% check_for_negative_density() 10 0.03964 0.08393 0.1136 3.15% Amr::FinalizeInit() 1 0.02637 0.06908 0.107 2.97% Castro::do_old_sources() 10 0.08849 0.09339 0.09648 2.68% FabArray::ParallelCopy_finish() 41 0.04446 0.05924 0.09162 2.54% Castro::computeInitialDt() 2 0.002332 0.04512 0.08298 2.30% amrex::Copy() 193 0.06134 0.07547 0.08181 2.27% FabArray::setVal() 143 0.06066 0.06613 0.07456 2.07% Castro::initialize_advance() 10 0.05795 0.06663 0.07237 2.01% Amr::writePlotFile() 2 0.07174 0.07186 0.0722 2.00% Castro::computeTemp() 63 0.06276 0.06594 0.07193 2.00% Castro::do_new_sources() 10 0.05944 0.06287 0.06993 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04433 0.04674 0.05152 1.43% Castro::reset_internal_energy(Fab) 1008 0.04405 0.04645 0.05115 1.42% Castro::normalize_species() 62 0.04147 0.04206 0.04345 1.21% FabArray::ParallelCopy_nowait() 41 0.03292 0.03827 0.04043 1.12% StateDataPhysBCFunct::() 41 0.02877 0.03087 0.03274 0.91% StateData::FillBoundary(geom) 41 0.02866 0.03077 0.03264 0.91% Castro::construct_new_source() 50 0.02826 0.02971 0.03236 0.90% Gravity::interpolate_monopole_grav() 21 0.02736 0.02892 0.02955 0.82% Castro::construct_new_gravity_source() 10 0.02268 0.02384 0.0263 0.73% Castro::finalize_do_advance() 10 0.01333 0.02045 0.02453 0.68% Castro::post_init() 1 0.02333 0.0236 0.02372 0.66% Castro::post_timestep() 10 0.01495 0.01551 0.01616 0.45% Castro::Castro() 1 0.01194 0.01303 0.01546 0.43% FabArray::setDomainBndry() 41 0.008242 0.01105 0.01345 0.37% Castro::check_for_nan() 20 0.008945 0.01013 0.01309 0.36% MultiFab::contains_nan() 20 0.008924 0.01011 0.01305 0.36% Castro::apply_source_to_state() 20 0.01019 0.01166 0.01287 0.36% FabArray::Saxpy() 20 0.01015 0.01162 0.01282 0.36% VisMF::Write(FabArray) 2 0.008143 0.009279 0.01177 0.33% Castro::initMFs() 1 0.007665 0.00865 0.0112 0.31% Castro::construct_old_source() 50 0.006608 0.00884 0.009459 0.26% Castro::construct_old_gravity_source() 10 0.00656 0.008769 0.009383 0.26% Castro::computeNewDt() 9 0.008987 0.009001 0.009018 0.25% AmrLevel::AmrLevel(dm) 1 0.006274 0.006922 0.008583 0.24% Other 260 0.02158 0.0249 0.02874 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 43 B 48 B 78 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-20-g5d02c6480a0d) finalized