Initializing AMReX (24.05-22-g9cc3de83ca40)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-22-g9cc3de83ca40) initialized Starting run at 05:21:15 UTC on 2024-05-21. Successfully read inputs file ... Castro git describe: 24.05-11-g097ac6684 AMReX git describe: 24.05-22-g9cc3de83c Microphysics git describe: 24.05-9-gd99de4ab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01407044 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372345021 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343649785 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34137033 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.367347951 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347577367 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36828235 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.333860842 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335190335 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33714253 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.342945244 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008790679 seconds Ending run at 05:21:19 UTC on 2024-05-21. Run time = 3.697867539 Run time without initialization = 3.503390117 Average number of zones advanced per microsecond: 0.748 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.697 ... 3.698 ... 3.698 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2638 2.4295 2.5544 69.08% Gravity::make_radial_gravity() 21 0.2973 0.3134 0.3397 9.19% check_for_negative_density() 10 0.03238 0.1633 0.3369 9.11% Castro::initData() 1 0.05755 0.09361 0.1313 3.55% Castro::estTimeStep() 21 0.03495 0.07485 0.1182 3.20% FabArray::ParallelCopy_finish() 41 0.05058 0.06498 0.1081 2.92% amrex::Copy() 193 0.05227 0.0757 0.08775 2.37% FabArray::setVal() 143 0.05977 0.06827 0.07311 1.98% Castro::normalize_species() 62 0.04516 0.05101 0.06141 1.66% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04746 0.05022 1.36% FabArray::ParallelCopy_nowait() 41 0.03047 0.03936 0.04361 1.18% StateData::FillBoundary(geom) 41 0.02752 0.03194 0.03666 0.99% FillPatchIterator::Initialize 41 0.02614 0.03197 0.03548 0.96% Gravity::interpolate_monopole_grav() 21 0.02775 0.0292 0.02992 0.81% Castro::construct_new_gravity_source() 10 0.0228 0.02483 0.02616 0.71% Castro::computeTemp() 63 0.01795 0.02019 0.02131 0.58% Castro::initialize_do_advance() 10 0.01177 0.01664 0.01798 0.49% FabArray::Saxpy() 20 0.009913 0.01205 0.01388 0.38% VisMF::Write(FabArray) 2 0.008686 0.009467 0.01382 0.37% FabArray::setDomainBndry() 41 0.00792 0.01076 0.01282 0.35% MultiFab::contains_nan() 20 0.009568 0.01055 0.01208 0.33% Amr::writePlotFile() 2 0.007579 0.01035 0.01126 0.30% Castro::initialize_advance() 10 0.005063 0.01002 0.01106 0.30% Castro::construct_old_gravity_source() 10 0.005452 0.008761 0.01009 0.27% Castro::initMFs() 1 0.006324 0.007232 0.007418 0.20% Castro::construct_new_source() 50 0.004963 0.006217 0.006837 0.18% Amr::coarseTimeStep() 10 0.002634 0.004445 0.005921 0.16% main() 1 0.003209 0.003875 0.004163 0.11% Gravity::get_new_grav_vector() 11 0.002561 0.003473 0.004046 0.11% Gravity::get_old_grav_vector() 10 0.001533 0.001972 0.002433 0.07% Castro::finalize_do_advance() 10 0.0003718 0.000926 0.001105 0.03% AmrLevel::FillPatch() 41 0.0006718 0.0007954 0.0009042 0.02% Amr::timeStep() 10 0.0001717 0.0002336 0.0005048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002887 0.0003019 0.0003197 0.01% Castro::clean_state() 62 0.0001459 0.0001693 0.0002 0.01% Castro::do_advance_ctu() 10 0.0001279 0.0001696 0.0001914 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001041 0.0001221 0.0001661 0.00% Castro::Castro() 1 7.736e-05 0.00011 0.0001417 0.00% StateDataPhysBCFunct::() 41 9.554e-05 0.0001055 0.0001136 0.00% Castro::do_old_sources() 10 6.883e-05 9.29e-05 0.0001003 0.00% FillPatchSingleLevel 41 7.604e-05 8.404e-05 9.443e-05 0.00% FabArray::ParallelCopy() 41 7.959e-05 8.418e-05 9.098e-05 0.00% Castro::construct_old_source() 50 4.5e-05 7.048e-05 8.485e-05 0.00% Amr::FinalizeInit() 1 3.765e-06 1.409e-05 8.063e-05 0.00% Castro::do_new_sources() 10 5.524e-05 6.345e-05 7.227e-05 0.00% Castro::subcycle_advance_ctu() 10 3.675e-05 5.664e-05 7.206e-05 0.00% Castro::advance() 10 4.475e-05 5.058e-05 5.955e-05 0.00% Amr::defBaseLevel() 1 3.873e-05 4.48e-05 5.737e-05 0.00% Castro::apply_source_to_state() 20 3.973e-05 4.664e-05 5.361e-05 0.00% Castro::construct_new_gravity() 10 2.55e-05 3.711e-05 4.817e-05 0.00% Castro::construct_old_gravity() 10 3.099e-05 3.691e-05 4.38e-05 0.00% Castro::expand_state() 10 1.822e-05 2.634e-05 3.253e-05 0.00% Castro::check_for_nan() 20 2.138e-05 2.43e-05 2.799e-05 0.00% Castro::post_timestep() 10 1.359e-05 1.774e-05 2.567e-05 0.00% Castro::post_init() 1 6.884e-06 8.947e-06 1.021e-05 0.00% Castro::computeNewDt() 9 7.891e-06 8.762e-06 1.011e-05 0.00% Amr::InitializeInit() 1 2.967e-06 3.796e-06 7.074e-06 0.00% Castro::computeInitialDt() 2 3.075e-06 3.901e-06 4.608e-06 0.00% Amr::init() 1 1.985e-06 2.374e-06 3.901e-06 0.00% Amr::initialInit() 1 1.543e-06 1.902e-06 2.378e-06 0.00% Other 261 0.01481 0.01856 0.01983 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.697 3.698 3.698 100.00% Amr::coarseTimeStep() 10 3.49 3.491 3.491 94.39% Amr::timeStep() 10 3.474 3.475 3.477 94.02% Castro::advance() 10 3.457 3.457 3.458 93.52% Castro::subcycle_advance_ctu() 10 3.378 3.383 3.395 91.82% Castro::do_advance_ctu() 10 3.378 3.383 3.395 91.81% Castro::construct_ctu_hydro_source() 10 2.609 2.615 2.621 70.87% Gravity::make_radial_gravity() 21 0.3139 0.3286 0.3504 9.48% check_for_negative_density() 10 0.03238 0.1633 0.3369 9.11% AmrLevel::FillPatch() 41 0.2034 0.2105 0.221 5.98% Gravity::get_new_grav_vector() 11 0.2141 0.216 0.2177 5.89% Castro::construct_old_gravity() 10 0.1865 0.1975 0.2132 5.76% Gravity::get_old_grav_vector() 10 0.1859 0.1968 0.2122 5.74% FillPatchIterator::Initialize 41 0.1705 0.1795 0.2007 5.43% Castro::construct_new_gravity() 10 0.1918 0.1935 0.1952 5.28% Amr::init() 1 0.1937 0.1939 0.194 5.25% Castro::initialize_do_advance() 10 0.1622 0.1716 0.1821 4.93% Amr::initialInit() 1 0.1795 0.18 0.1801 4.87% FillPatchIterator::FillFromLevel0() 41 0.1244 0.1368 0.1667 4.51% FillPatchSingleLevel 41 0.1243 0.1366 0.1665 4.50% Amr::InitializeInit() 1 0.08008 0.1156 0.1537 4.16% Amr::defBaseLevel() 1 0.08007 0.1156 0.1537 4.16% FabArray::ParallelCopy() 41 0.09278 0.1045 0.1388 3.75% Castro::initData() 1 0.06173 0.09779 0.1354 3.66% Castro::clean_state() 62 0.1145 0.1241 0.1345 3.64% Castro::expand_state() 10 0.1095 0.118 0.1254 3.39% Castro::estTimeStep() 21 0.03495 0.07485 0.1182 3.20% FabArray::ParallelCopy_finish() 41 0.05058 0.06498 0.1081 2.92% Castro::do_old_sources() 10 0.09464 0.09803 0.1009 2.73% Amr::FinalizeInit() 1 0.02631 0.06437 0.09937 2.69% amrex::Copy() 193 0.05227 0.0757 0.08775 2.37% Castro::initialize_advance() 10 0.05787 0.07102 0.07615 2.06% Castro::computeInitialDt() 2 0.002249 0.04032 0.07573 2.05% FabArray::setVal() 143 0.05977 0.06827 0.07311 1.98% Castro::computeTemp() 63 0.06381 0.06795 0.07185 1.94% Castro::do_new_sources() 10 0.05999 0.06631 0.06859 1.85% Castro::normalize_species() 62 0.04516 0.05101 0.06141 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04501 0.04776 0.05054 1.37% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04746 0.05022 1.36% FabArray::ParallelCopy_nowait() 41 0.03059 0.03945 0.04371 1.18% StateDataPhysBCFunct::() 41 0.02764 0.03205 0.03678 0.99% StateData::FillBoundary(geom) 41 0.02752 0.03194 0.03666 0.99% Castro::finalize_do_advance() 10 0.02259 0.02557 0.03296 0.89% Castro::construct_new_source() 50 0.02776 0.03105 0.03272 0.88% Gravity::interpolate_monopole_grav() 21 0.02775 0.0292 0.02992 0.81% Castro::construct_new_gravity_source() 10 0.0228 0.02483 0.02616 0.71% Castro::post_init() 1 0.02319 0.02342 0.0236 0.64% Amr::writePlotFile() 2 0.02266 0.02275 0.02315 0.63% Castro::post_timestep() 10 0.01593 0.01729 0.01926 0.52% Castro::apply_source_to_state() 20 0.009956 0.01209 0.01393 0.38% FabArray::Saxpy() 20 0.009913 0.01205 0.01388 0.38% VisMF::Write(FabArray) 2 0.008686 0.009467 0.01382 0.37% FabArray::setDomainBndry() 41 0.00792 0.01076 0.01282 0.35% Castro::Castro() 1 0.009069 0.01168 0.01225 0.33% Castro::check_for_nan() 20 0.009596 0.01058 0.0121 0.33% MultiFab::contains_nan() 20 0.009568 0.01055 0.01208 0.33% Castro::construct_old_source() 50 0.005506 0.008831 0.01018 0.28% Castro::construct_old_gravity_source() 10 0.005452 0.008761 0.01009 0.27% Castro::computeNewDt() 9 0.009887 0.009898 0.009906 0.27% Castro::initMFs() 1 0.006324 0.007232 0.007418 0.20% Other 261 0.02486 0.03012 0.03232 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-22-g9cc3de83ca40) finalized