Initializing AMReX (24.05-23-g8c5d761fe7a6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-23-g8c5d761fe7a6) initialized Starting run at 05:36:42 UTC on 2024-05-22. Successfully read inputs file ... Castro git describe: 24.05-12-g105bb7768 AMReX git describe: 24.05-23-g8c5d761fe Microphysics git describe: 24.05-9-gd99de4ab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014706625 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367509574 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351947085 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331078409 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.377231078 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337277448 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315689933 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316102436 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315277594 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316023108 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31808145 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.052764421 seconds Ending run at 05:36:46 UTC on 2024-05-22. Run time = 3.592172754 Run time without initialization = 3.404474766 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.591 ... 3.591 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2944 2.3963 2.4389 67.89% Gravity::make_radial_gravity() 21 0.2937 0.298 0.3116 8.67% check_for_negative_density() 10 0.05078 0.09398 0.1969 5.48% Castro::initData() 1 0.04898 0.08728 0.1236 3.44% Castro::estTimeStep() 21 0.03297 0.07438 0.1165 3.24% amrex::Copy() 193 0.06363 0.07556 0.08078 2.25% FabArray::setVal() 143 0.06253 0.06987 0.07923 2.21% FabArray::ParallelCopy_finish() 41 0.0422 0.05044 0.07094 1.97% Amr::writePlotFile() 2 0.05234 0.05551 0.05646 1.57% Castro::reset_internal_energy(Fab) 1008 0.04423 0.04703 0.04884 1.36% Castro::normalize_species() 62 0.04192 0.04265 0.04333 1.21% FabArray::ParallelCopy_nowait() 41 0.03437 0.03886 0.04139 1.15% FillPatchIterator::Initialize 41 0.02838 0.0317 0.03386 0.94% StateData::FillBoundary(geom) 41 0.02865 0.03125 0.03325 0.93% Gravity::interpolate_monopole_grav() 21 0.02731 0.02906 0.0302 0.84% Castro::construct_new_gravity_source() 10 0.02298 0.02474 0.02693 0.75% Castro::computeTemp() 63 0.01762 0.01951 0.02022 0.56% Castro::initialize_do_advance() 10 0.01368 0.01705 0.01913 0.53% FabArray::setDomainBndry() 41 0.008163 0.01097 0.01316 0.37% FabArray::Saxpy() 20 0.01103 0.01205 0.01286 0.36% VisMF::Write(FabArray) 2 0.008969 0.009646 0.01258 0.35% Castro::initialize_advance() 10 0.005566 0.009621 0.01197 0.33% MultiFab::contains_nan() 20 0.00906 0.009844 0.01062 0.30% Castro::construct_old_gravity_source() 10 0.006638 0.008896 0.009503 0.26% Castro::initMFs() 1 0.006635 0.006877 0.007568 0.21% Castro::construct_new_source() 50 0.005332 0.005886 0.006197 0.17% Gravity::get_new_grav_vector() 11 0.002861 0.003956 0.004959 0.14% main() 1 0.003226 0.003922 0.004687 0.13% Amr::coarseTimeStep() 10 0.001584 0.00259 0.003188 0.09% Gravity::get_old_grav_vector() 10 0.001783 0.001969 0.002342 0.07% Castro::finalize_do_advance() 10 0.0003989 0.0009385 0.001056 0.03% AmrLevel::FillPatch() 41 0.0008143 0.0008892 0.001004 0.03% Amr::timeStep() 10 0.0001816 0.0002262 0.0004231 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002767 0.0002996 0.0003305 0.01% Castro::clean_state() 62 0.000145 0.0001729 0.0002245 0.01% Castro::do_advance_ctu() 10 0.0001537 0.0001724 0.0002121 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001089 0.0001197 0.0001389 0.00% StateDataPhysBCFunct::() 41 0.0001024 0.0001149 0.0001285 0.00% Castro::do_new_sources() 10 5.592e-05 6.889e-05 0.00011 0.00% Castro::Castro() 1 7.012e-05 9.428e-05 0.0001088 0.00% Castro::do_old_sources() 10 7.923e-05 9.329e-05 0.0001075 0.00% FabArray::ParallelCopy() 41 7.748e-05 8.465e-05 0.0001023 0.00% Castro::construct_old_source() 50 6.326e-05 7.392e-05 9.554e-05 0.00% FillPatchSingleLevel 41 7.327e-05 8.322e-05 9.164e-05 0.00% Amr::FinalizeInit() 1 3.756e-06 1.349e-05 7.611e-05 0.00% Castro::subcycle_advance_ctu() 10 5.124e-05 5.66e-05 6.69e-05 0.00% Amr::defBaseLevel() 1 4.133e-05 5.262e-05 5.965e-05 0.00% Castro::apply_source_to_state() 20 3.518e-05 4.334e-05 5.26e-05 0.00% Castro::advance() 10 4.228e-05 4.526e-05 5.158e-05 0.00% Castro::construct_old_gravity() 10 3.13e-05 3.694e-05 4.249e-05 0.00% Castro::construct_new_gravity() 10 2.791e-05 3.364e-05 3.969e-05 0.00% Castro::check_for_nan() 20 1.978e-05 2.404e-05 3.254e-05 0.00% Castro::expand_state() 10 2.07e-05 2.533e-05 3.105e-05 0.00% Castro::post_init() 1 9.097e-06 1.348e-05 2.137e-05 0.00% Castro::post_timestep() 10 1.381e-05 1.565e-05 1.899e-05 0.00% Castro::computeNewDt() 9 8.155e-06 1.029e-05 1.154e-05 0.00% Amr::InitializeInit() 1 2.675e-06 3.47e-06 6.317e-06 0.00% Castro::computeInitialDt() 2 3.689e-06 4.029e-06 4.465e-06 0.00% Amr::initialInit() 1 1.491e-06 1.903e-06 2.6e-06 0.00% Amr::init() 1 1.904e-06 2.188e-06 2.371e-06 0.00% Other 261 0.01614 0.01822 0.02007 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.591 3.591 3.592 100.00% Amr::coarseTimeStep() 10 3.347 3.347 3.347 93.18% Amr::timeStep() 10 3.333 3.334 3.335 92.83% Castro::advance() 10 3.317 3.318 3.318 92.38% Castro::subcycle_advance_ctu() 10 3.237 3.245 3.249 90.43% Castro::do_advance_ctu() 10 3.237 3.245 3.249 90.43% Castro::construct_ctu_hydro_source() 10 2.509 2.511 2.516 70.05% Gravity::make_radial_gravity() 21 0.3098 0.3138 0.3248 9.04% Gravity::get_new_grav_vector() 11 0.2069 0.2108 0.2124 5.91% AmrLevel::FillPatch() 41 0.1755 0.1945 0.204 5.68% check_for_negative_density() 10 0.05078 0.09398 0.1969 5.48% Castro::construct_old_gravity() 10 0.1817 0.1853 0.1941 5.40% Gravity::get_old_grav_vector() 10 0.1812 0.1846 0.193 5.37% Castro::construct_new_gravity() 10 0.1838 0.1872 0.1886 5.25% Amr::init() 1 0.187 0.1872 0.1872 5.21% FillPatchIterator::Initialize 41 0.1474 0.1637 0.1751 4.88% Amr::initialInit() 1 0.1717 0.1721 0.1725 4.80% Castro::initialize_do_advance() 10 0.1528 0.1645 0.1719 4.78% Amr::InitializeInit() 1 0.06983 0.1084 0.1447 4.03% Amr::defBaseLevel() 1 0.06983 0.1084 0.1447 4.03% FillPatchIterator::FillFromLevel0() 41 0.1094 0.121 0.1371 3.82% FillPatchSingleLevel 41 0.1093 0.1209 0.137 3.81% Castro::initData() 1 0.05292 0.09125 0.1278 3.56% Castro::expand_state() 10 0.09717 0.1118 0.1192 3.32% Castro::clean_state() 62 0.1098 0.1148 0.1178 3.28% Castro::estTimeStep() 21 0.03297 0.07438 0.1165 3.24% FabArray::ParallelCopy() 41 0.08042 0.08948 0.1055 2.94% Amr::FinalizeInit() 1 0.02773 0.06367 0.1021 2.84% Castro::do_old_sources() 10 0.0852 0.08916 0.09186 2.56% amrex::Copy() 193 0.06363 0.07556 0.08078 2.25% FabArray::setVal() 143 0.06253 0.06987 0.07923 2.21% Castro::computeInitialDt() 2 0.002492 0.0387 0.07731 2.15% Castro::initialize_advance() 10 0.06573 0.06913 0.07707 2.15% FabArray::ParallelCopy_finish() 41 0.0422 0.05044 0.07094 1.97% Castro::do_new_sources() 10 0.06118 0.06552 0.0708 1.97% Castro::computeTemp() 63 0.06215 0.06685 0.06927 1.93% Amr::writePlotFile() 2 0.06757 0.06795 0.0683 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04453 0.04733 0.04916 1.37% Castro::reset_internal_energy(Fab) 1008 0.04423 0.04703 0.04884 1.36% Castro::normalize_species() 62 0.04192 0.04265 0.04333 1.21% FabArray::ParallelCopy_nowait() 41 0.03447 0.03895 0.04148 1.15% StateDataPhysBCFunct::() 41 0.02877 0.03137 0.03337 0.93% StateData::FillBoundary(geom) 41 0.02865 0.03125 0.03325 0.93% Castro::construct_new_source() 50 0.02896 0.03062 0.03283 0.91% Castro::finalize_do_advance() 10 0.02153 0.02727 0.03177 0.88% Gravity::interpolate_monopole_grav() 21 0.02731 0.02906 0.0302 0.84% Castro::construct_new_gravity_source() 10 0.02298 0.02474 0.02693 0.75% Castro::post_init() 1 0.02432 0.02468 0.02504 0.70% Castro::post_timestep() 10 0.01496 0.0158 0.01642 0.46% FabArray::setDomainBndry() 41 0.008163 0.01097 0.01316 0.37% Castro::apply_source_to_state() 20 0.01108 0.0121 0.01291 0.36% FabArray::Saxpy() 20 0.01103 0.01205 0.01286 0.36% VisMF::Write(FabArray) 2 0.008969 0.009646 0.01258 0.35% Castro::Castro() 1 0.01098 0.01123 0.01185 0.33% Castro::check_for_nan() 20 0.009092 0.009868 0.01064 0.30% MultiFab::contains_nan() 20 0.00906 0.009844 0.01062 0.30% Castro::construct_old_source() 50 0.006703 0.00897 0.009576 0.27% Castro::construct_old_gravity_source() 10 0.006638 0.008896 0.009503 0.26% Castro::computeNewDt() 9 0.00935 0.009356 0.009361 0.26% Castro::initMFs() 1 0.006635 0.006877 0.007568 0.21% Other 261 0.02621 0.02915 0.03229 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-23-g8c5d761fe7a6) finalized