Initializing AMReX (24.05-26-ge6c93bf22695)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-26-ge6c93bf22695) initialized Starting run at 05:21:59 UTC on 2024-05-23. Successfully read inputs file ... Castro git describe: 24.05-13-gf7309fc71 AMReX git describe: 24.05-26-ge6c93bf22 Microphysics git describe: 24.05-12-g0dd7c3c7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014670912 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.380297125 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.372365094 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.353543946 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.381498105 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344556277 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.323042932 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317146024 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.323640058 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334910217 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335626574 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00752043 seconds Ending run at 05:22:03 UTC on 2024-05-23. Run time = 3.665977027 Run time without initialization = 3.478786079 Average number of zones advanced per microsecond: 0.754 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.665 ... 3.666 ... 3.666 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3036 2.4428 2.5232 68.83% Gravity::make_radial_gravity() 21 0.3028 0.3106 0.3208 8.75% check_for_negative_density() 10 0.05949 0.1398 0.2815 7.68% Castro::initData() 1 0.05075 0.08763 0.1237 3.38% Castro::estTimeStep() 21 0.03037 0.07128 0.113 3.08% amrex::Copy() 193 0.07545 0.07928 0.08485 2.31% FabArray::setVal() 143 0.06573 0.07193 0.08057 2.20% FabArray::ParallelCopy_finish() 41 0.04131 0.04865 0.05453 1.49% Castro::normalize_species() 62 0.04176 0.04344 0.05073 1.38% Castro::reset_internal_energy(Fab) 1008 0.04573 0.04827 0.05046 1.38% FabArray::ParallelCopy_nowait() 41 0.03905 0.04115 0.04311 1.18% StateData::FillBoundary(geom) 41 0.02897 0.03247 0.03782 1.03% FillPatchIterator::Initialize 41 0.02906 0.03288 0.03452 0.94% Gravity::interpolate_monopole_grav() 21 0.02785 0.02924 0.03026 0.83% Castro::construct_new_gravity_source() 10 0.02334 0.02526 0.02702 0.74% Castro::computeTemp() 63 0.01909 0.02029 0.02166 0.59% Castro::initialize_do_advance() 10 0.01647 0.01816 0.01974 0.54% FabArray::Saxpy() 20 0.01088 0.01238 0.01361 0.37% Castro::initialize_advance() 10 0.01034 0.01183 0.01353 0.37% FabArray::setDomainBndry() 41 0.009221 0.01142 0.01287 0.35% VisMF::Write(FabArray) 2 0.008826 0.009283 0.01164 0.32% MultiFab::contains_nan() 20 0.009544 0.01041 0.01162 0.32% Castro::construct_old_gravity_source() 10 0.00875 0.009542 0.01037 0.28% Amr::writePlotFile() 2 0.007699 0.009743 0.01024 0.28% Castro::initMFs() 1 0.006391 0.006733 0.008406 0.23% Castro::construct_new_source() 50 0.005975 0.006161 0.006467 0.18% Gravity::get_new_grav_vector() 11 0.003094 0.003706 0.004181 0.11% Amr::coarseTimeStep() 10 0.001877 0.0032 0.004023 0.11% main() 1 0.003136 0.003648 0.00396 0.11% Gravity::get_old_grav_vector() 10 0.001633 0.002172 0.002621 0.07% Castro::finalize_do_advance() 10 0.001009 0.001104 0.001159 0.03% AmrLevel::FillPatch() 41 0.0007549 0.0009422 0.00105 0.03% Amr::timeStep() 10 0.0001804 0.0002321 0.0004243 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002834 0.0003083 0.0003382 0.01% Castro::clean_state() 62 0.0001548 0.0001788 0.0002129 0.01% Castro::do_advance_ctu() 10 0.0001624 0.0001768 0.0001866 0.01% Castro::Castro() 1 7.579e-05 0.0001082 0.0001491 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001065 0.0001233 0.0001477 0.00% StateDataPhysBCFunct::() 41 0.0001002 0.0001124 0.0001297 0.00% Castro::do_old_sources() 10 8.298e-05 0.0001013 0.0001176 0.00% Castro::construct_old_source() 50 6.43e-05 8.498e-05 0.0001043 0.00% FabArray::ParallelCopy() 41 8.771e-05 9.244e-05 0.0001009 0.00% FillPatchSingleLevel 41 8.185e-05 9.083e-05 0.0001002 0.00% Amr::FinalizeInit() 1 4.325e-06 1.493e-05 8.501e-05 0.00% Castro::do_new_sources() 10 5.688e-05 6.494e-05 7.274e-05 0.00% Castro::subcycle_advance_ctu() 10 4.675e-05 5.484e-05 6.015e-05 0.00% Amr::defBaseLevel() 1 4.619e-05 5.22e-05 5.925e-05 0.00% Castro::apply_source_to_state() 20 3.51e-05 4.691e-05 5.715e-05 0.00% Castro::advance() 10 4.247e-05 4.954e-05 5.592e-05 0.00% Castro::construct_new_gravity() 10 3.144e-05 3.672e-05 5.246e-05 0.00% Castro::construct_old_gravity() 10 3.459e-05 4.061e-05 4.642e-05 0.00% Castro::expand_state() 10 2.147e-05 2.684e-05 3.116e-05 0.00% Castro::check_for_nan() 20 2.284e-05 2.506e-05 2.855e-05 0.00% Castro::post_init() 1 8.152e-06 1.15e-05 1.969e-05 0.00% Castro::post_timestep() 10 1.373e-05 1.574e-05 1.787e-05 0.00% Castro::computeNewDt() 9 7.609e-06 1.048e-05 1.652e-05 0.00% Amr::InitializeInit() 1 2.819e-06 3.454e-06 6.142e-06 0.00% Castro::computeInitialDt() 2 3.489e-06 4.03e-06 4.633e-06 0.00% Amr::init() 1 2.058e-06 2.409e-06 2.994e-06 0.00% Amr::initialInit() 1 1.535e-06 2.142e-06 2.7e-06 0.00% Other 261 0.01623 0.0183 0.02002 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.665 3.666 3.666 100.00% Amr::coarseTimeStep() 10 3.467 3.467 3.467 94.58% Amr::timeStep() 10 3.452 3.453 3.454 94.22% Castro::advance() 10 3.436 3.436 3.437 93.76% Castro::subcycle_advance_ctu() 10 3.353 3.359 3.363 91.73% Castro::do_advance_ctu() 10 3.353 3.359 3.363 91.73% Castro::construct_ctu_hydro_source() 10 2.6 2.604 2.609 71.16% Gravity::make_radial_gravity() 21 0.3183 0.3268 0.3364 9.18% check_for_negative_density() 10 0.05949 0.1398 0.2815 7.68% Gravity::get_new_grav_vector() 11 0.2198 0.2215 0.2234 6.09% AmrLevel::FillPatch() 41 0.1891 0.1995 0.2141 5.84% Castro::construct_new_gravity() 10 0.1967 0.1982 0.1998 5.45% Castro::construct_old_gravity() 10 0.183 0.1898 0.1967 5.36% Gravity::get_old_grav_vector() 10 0.1823 0.1891 0.196 5.35% Amr::init() 1 0.1864 0.1866 0.1867 5.09% Castro::initialize_do_advance() 10 0.1562 0.1675 0.1789 4.88% FillPatchIterator::Initialize 41 0.1604 0.1671 0.1788 4.88% Amr::initialInit() 1 0.1716 0.1721 0.1722 4.70% Amr::InitializeInit() 1 0.07101 0.1086 0.1447 3.95% Amr::defBaseLevel() 1 0.071 0.1086 0.1447 3.95% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1228 0.1318 3.59% FillPatchSingleLevel 41 0.1155 0.1227 0.1316 3.59% Castro::clean_state() 62 0.1121 0.1176 0.1285 3.50% Castro::initData() 1 0.0543 0.09176 0.1278 3.49% Castro::expand_state() 10 0.1032 0.1127 0.1236 3.37% Castro::estTimeStep() 21 0.03037 0.07128 0.113 3.08% Amr::FinalizeInit() 1 0.02747 0.06347 0.1006 2.74% FabArray::ParallelCopy() 41 0.08323 0.09 0.09782 2.67% Castro::do_old_sources() 10 0.09092 0.09391 0.09718 2.65% amrex::Copy() 193 0.07545 0.07928 0.08485 2.31% FabArray::setVal() 143 0.06573 0.07193 0.08057 2.20% Castro::initialize_advance() 10 0.07009 0.07407 0.07969 2.17% Castro::computeInitialDt() 2 0.002364 0.03842 0.07584 2.07% Castro::computeTemp() 63 0.06515 0.06887 0.07245 1.98% Castro::do_new_sources() 10 0.06145 0.06571 0.0701 1.91% FabArray::ParallelCopy_finish() 41 0.04131 0.04865 0.05453 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04603 0.04858 0.0508 1.39% Castro::normalize_species() 62 0.04176 0.04344 0.05073 1.38% Castro::reset_internal_energy(Fab) 1008 0.04573 0.04827 0.05046 1.38% FabArray::ParallelCopy_nowait() 41 0.03915 0.04125 0.0432 1.18% StateDataPhysBCFunct::() 41 0.02908 0.03258 0.03793 1.03% StateData::FillBoundary(geom) 41 0.02897 0.03247 0.03782 1.03% Castro::construct_new_source() 50 0.02948 0.03142 0.033 0.90% Gravity::interpolate_monopole_grav() 21 0.02785 0.02924 0.03026 0.83% Castro::finalize_do_advance() 10 0.0186 0.02371 0.02874 0.78% Castro::construct_new_gravity_source() 10 0.02334 0.02526 0.02702 0.74% Castro::post_init() 1 0.02415 0.02452 0.02474 0.67% Amr::writePlotFile() 2 0.02203 0.02215 0.02247 0.61% Castro::post_timestep() 10 0.01534 0.01602 0.01767 0.48% Castro::apply_source_to_state() 20 0.01091 0.01242 0.01367 0.37% FabArray::Saxpy() 20 0.01088 0.01238 0.01361 0.37% FabArray::setDomainBndry() 41 0.009221 0.01142 0.01287 0.35% Castro::Castro() 1 0.01061 0.01111 0.01209 0.33% Castro::check_for_nan() 20 0.009567 0.01043 0.01164 0.32% VisMF::Write(FabArray) 2 0.008826 0.009283 0.01164 0.32% MultiFab::contains_nan() 20 0.009544 0.01041 0.01162 0.32% Castro::construct_old_source() 50 0.008814 0.009627 0.01047 0.29% Castro::construct_old_gravity_source() 10 0.00875 0.009542 0.01037 0.28% Castro::computeNewDt() 9 0.01025 0.01027 0.01028 0.28% Castro::initMFs() 1 0.006391 0.006733 0.008406 0.23% Other 261 0.02606 0.02917 0.03249 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-26-ge6c93bf22695) finalized