Initializing AMReX (24.05-30-g8e67cc99f079)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-30-g8e67cc99f079) initialized Starting run at 05:26:28 UTC on 2024-05-27. Successfully read inputs file ... Castro git describe: 24.05-14-g158d4b0e3 AMReX git describe: 24.05-30-g8e67cc99f Microphysics git describe: 24.05-21-g2adc854d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015511289 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363332406 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341369543 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.359080124 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.371895206 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331384868 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.314411027 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312092818 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312027949 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313723085 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312569648 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00762597 seconds Ending run at 05:26:31 UTC on 2024-05-27. Run time = 3.541014236 Run time without initialization = 3.343959133 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.541 ... 3.541 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2843 2.3982 2.4559 69.35% Gravity::make_radial_gravity() 21 0.2945 0.3035 0.3162 8.93% check_for_negative_density() 10 0.02237 0.08283 0.2003 5.66% Castro::initData() 1 0.0491 0.09376 0.1305 3.69% Castro::estTimeStep() 21 0.0258 0.06822 0.117 3.30% amrex::Copy() 193 0.06122 0.0747 0.0808 2.28% FabArray::ParallelCopy_finish() 41 0.0381 0.05042 0.08018 2.26% FabArray::setVal() 143 0.0622 0.06708 0.07423 2.10% Castro::reset_internal_energy(Fab) 1008 0.04217 0.04592 0.04764 1.35% Castro::normalize_species() 62 0.04135 0.04251 0.04404 1.24% FabArray::ParallelCopy_nowait() 41 0.03323 0.03927 0.0418 1.18% StateData::FillBoundary(geom) 41 0.03014 0.03295 0.03514 0.99% FillPatchIterator::Initialize 41 0.02784 0.03173 0.0334 0.94% Gravity::interpolate_monopole_grav() 21 0.02797 0.02908 0.0302 0.85% Castro::construct_new_gravity_source() 10 0.02265 0.02421 0.02589 0.73% Castro::initialize_do_advance() 10 0.01262 0.01713 0.02006 0.57% Castro::computeTemp() 63 0.01713 0.01904 0.01986 0.56% VisMF::Write(FabArray) 2 0.008935 0.009644 0.01319 0.37% FabArray::setDomainBndry() 41 0.008189 0.0109 0.01297 0.37% FabArray::Saxpy() 20 0.0113 0.0119 0.01263 0.36% Castro::initialize_advance() 10 0.005549 0.009589 0.0119 0.34% Amr::writePlotFile() 2 0.008353 0.01052 0.01148 0.32% MultiFab::contains_nan() 20 0.009605 0.0104 0.01126 0.32% Castro::construct_old_gravity_source() 10 0.006372 0.00872 0.009325 0.26% Castro::enforce_min_density() 62 0.007019 0.007235 0.007471 0.21% Castro::construct_new_source() 50 0.005333 0.005874 0.006123 0.17% Gravity::get_new_grav_vector() 11 0.00269 0.004101 0.005532 0.16% main() 1 0.003299 0.003544 0.003682 0.10% Amr::coarseTimeStep() 10 0.001604 0.002687 0.003649 0.10% Gravity::get_old_grav_vector() 10 0.001683 0.002052 0.002485 0.07% Castro::finalize_do_advance() 10 0.0003711 0.0008896 0.001061 0.03% AmrLevel::FillPatch() 41 0.0006681 0.000824 0.0009647 0.03% Amr::timeStep() 10 0.0001604 0.0002181 0.0004387 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002839 0.000298 0.0003147 0.01% Castro::do_advance_ctu() 10 0.0001621 0.0001691 0.0001802 0.01% Castro::clean_state() 62 0.0001414 0.000159 0.000176 0.00% FillPatchIterator::FillFromLevel0() 41 9.92e-05 0.0001104 0.0001269 0.00% Castro::Castro() 1 7.531e-05 0.0001038 0.000126 0.00% StateDataPhysBCFunct::() 41 8.933e-05 0.0001029 0.0001143 0.00% Castro::do_old_sources() 10 8.037e-05 8.852e-05 9.802e-05 0.00% FabArray::ParallelCopy() 41 6.973e-05 7.901e-05 8.952e-05 0.00% Amr::FinalizeInit() 1 3.841e-06 1.369e-05 7.986e-05 0.00% Castro::construct_old_source() 50 5.926e-05 7.247e-05 7.956e-05 0.00% FillPatchSingleLevel 41 6.435e-05 7.191e-05 7.867e-05 0.00% Castro::do_new_sources() 10 5.65e-05 6.174e-05 7.191e-05 0.00% Castro::apply_source_to_state() 20 3.658e-05 4.313e-05 6.548e-05 0.00% Castro::subcycle_advance_ctu() 10 3.878e-05 5.086e-05 6.477e-05 0.00% Amr::defBaseLevel() 1 4.394e-05 4.895e-05 5.888e-05 0.00% Castro::advance() 10 4.162e-05 4.93e-05 5.69e-05 0.00% Castro::construct_old_gravity() 10 3.308e-05 3.666e-05 4.116e-05 0.00% Castro::construct_new_gravity() 10 3.04e-05 3.584e-05 3.878e-05 0.00% Castro::check_for_nan() 20 2.075e-05 2.309e-05 2.751e-05 0.00% Castro::expand_state() 10 2.005e-05 2.344e-05 2.668e-05 0.00% Castro::post_timestep() 10 1.446e-05 1.655e-05 2.018e-05 0.00% Castro::post_init() 1 8.204e-06 1.003e-05 1.334e-05 0.00% Castro::computeNewDt() 9 7.322e-06 9.482e-06 1.272e-05 0.00% Amr::init() 1 1.779e-06 2.848e-06 8.358e-06 0.00% Amr::InitializeInit() 1 2.874e-06 4.447e-06 6.6e-06 0.00% Castro::computeInitialDt() 2 3.27e-06 3.901e-06 4.969e-06 0.00% Amr::initialInit() 1 1.495e-06 1.672e-06 1.929e-06 0.00% Other 200 0.01578 0.01965 0.021 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.541 3.541 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 94.12% Amr::timeStep() 10 3.319 3.32 3.321 93.78% Castro::advance() 10 3.304 3.304 3.304 93.31% Castro::subcycle_advance_ctu() 10 3.229 3.233 3.237 91.42% Castro::do_advance_ctu() 10 3.229 3.233 3.237 91.42% Castro::construct_ctu_hydro_source() 10 2.499 2.502 2.505 70.75% Gravity::make_radial_gravity() 21 0.3093 0.319 0.3295 9.30% Gravity::get_new_grav_vector() 11 0.2118 0.2128 0.215 6.07% AmrLevel::FillPatch() 41 0.1849 0.1963 0.2061 5.82% check_for_negative_density() 10 0.02237 0.08283 0.2003 5.66% Castro::construct_old_gravity() 10 0.1841 0.1894 0.1966 5.55% Amr::init() 1 0.1964 0.1965 0.1965 5.55% Gravity::get_old_grav_vector() 10 0.1833 0.1887 0.1956 5.52% Castro::construct_new_gravity() 10 0.1873 0.1877 0.189 5.34% Amr::initialInit() 1 0.1807 0.1815 0.182 5.14% FillPatchIterator::Initialize 41 0.1534 0.1657 0.18 5.08% Castro::initialize_do_advance() 10 0.1588 0.1644 0.1709 4.83% Amr::InitializeInit() 1 0.06731 0.1153 0.1525 4.31% Amr::defBaseLevel() 1 0.06731 0.1153 0.1525 4.31% FillPatchIterator::FillFromLevel0() 41 0.1106 0.1231 0.144 4.07% FillPatchSingleLevel 41 0.1105 0.123 0.1439 4.06% Castro::initData() 1 0.05266 0.09768 0.1346 3.80% Castro::estTimeStep() 21 0.0258 0.06822 0.117 3.30% Castro::expand_state() 10 0.1032 0.1113 0.1165 3.29% Castro::clean_state() 62 0.1087 0.1143 0.1162 3.28% FabArray::ParallelCopy() 41 0.07761 0.08986 0.1136 3.21% Amr::FinalizeInit() 1 0.02857 0.06621 0.1134 3.20% Castro::do_old_sources() 10 0.08641 0.09017 0.09367 2.65% Castro::computeInitialDt() 2 0.002412 0.03965 0.08752 2.47% amrex::Copy() 193 0.06122 0.0747 0.0808 2.28% FabArray::ParallelCopy_finish() 41 0.0381 0.05042 0.08018 2.26% FabArray::setVal() 143 0.0622 0.06708 0.07423 2.10% Castro::initialize_advance() 10 0.06253 0.06714 0.07152 2.02% Castro::do_new_sources() 10 0.05985 0.06441 0.07023 1.98% Castro::computeTemp() 63 0.05958 0.06526 0.0678 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04246 0.04622 0.04794 1.35% Castro::reset_internal_energy(Fab) 1008 0.04217 0.04592 0.04764 1.35% Castro::normalize_species() 62 0.04135 0.04251 0.04404 1.24% FabArray::ParallelCopy_nowait() 41 0.03332 0.03936 0.04188 1.18% StateDataPhysBCFunct::() 41 0.03024 0.03305 0.03525 1.00% StateData::FillBoundary(geom) 41 0.03014 0.03295 0.03514 0.99% Castro::construct_new_source() 50 0.0285 0.03008 0.03192 0.90% Gravity::interpolate_monopole_grav() 21 0.02797 0.02908 0.0302 0.85% Castro::post_init() 1 0.02548 0.02621 0.02675 0.76% Castro::construct_new_gravity_source() 10 0.02265 0.02421 0.02589 0.73% Castro::finalize_do_advance() 10 0.01411 0.02038 0.02469 0.70% Amr::writePlotFile() 2 0.02214 0.02271 0.02341 0.66% Castro::post_timestep() 10 0.01491 0.01558 0.01615 0.46% VisMF::Write(FabArray) 2 0.008935 0.009644 0.01319 0.37% FabArray::setDomainBndry() 41 0.008189 0.0109 0.01297 0.37% Castro::apply_source_to_state() 20 0.01134 0.01194 0.0127 0.36% FabArray::Saxpy() 20 0.0113 0.0119 0.01263 0.36% Castro::Castro() 1 0.009172 0.01149 0.01203 0.34% Castro::check_for_nan() 20 0.009626 0.01042 0.01129 0.32% MultiFab::contains_nan() 20 0.009605 0.0104 0.01126 0.32% Castro::construct_old_source() 50 0.006431 0.008792 0.0094 0.27% Castro::construct_old_gravity_source() 10 0.006372 0.00872 0.009325 0.26% Castro::computeNewDt() 9 0.009078 0.009092 0.00911 0.26% Castro::enforce_min_density() 62 0.007019 0.007235 0.007471 0.21% Other 200 0.02579 0.03075 0.03337 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-30-g8e67cc99f079) finalized