Initializing AMReX (24.05-32-g28b010126a1b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-32-g28b010126a1b) initialized Starting run at 05:29:13 UTC on 2024-05-28. Successfully read inputs file ... Castro git describe: 24.05-15-g7893b5c6d AMReX git describe: 24.05-32-g28b010126 Microphysics git describe: 24.05-22-g7b1458be reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014752501 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36584311 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.376839061 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.374237778 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.381410642 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333052049 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312883475 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313778436 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313676064 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313411999 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31702829 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007537873 seconds Ending run at 05:29:16 UTC on 2024-05-28. Run time = 3.607844872 Run time without initialization = 3.414153907 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.608 ... 3.608 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3255 2.4191 2.4784 68.69% Gravity::make_radial_gravity() 21 0.2997 0.3088 0.3157 8.75% check_for_negative_density() 10 0.05039 0.1122 0.2089 5.79% Castro::initData() 1 0.056 0.09201 0.1289 3.57% Castro::estTimeStep() 21 0.02591 0.06817 0.109 3.02% amrex::Copy() 193 0.07706 0.08036 0.08672 2.40% FabArray::setVal() 143 0.06444 0.07018 0.07655 2.12% FabArray::ParallelCopy_finish() 41 0.03689 0.04608 0.05023 1.39% Castro::reset_internal_energy(Fab) 1008 0.04501 0.04729 0.04945 1.37% Castro::normalize_species() 62 0.04108 0.04278 0.0474 1.31% FabArray::ParallelCopy_nowait() 41 0.0382 0.04061 0.04206 1.17% StateData::FillBoundary(geom) 41 0.02955 0.03221 0.03528 0.98% FillPatchIterator::Initialize 41 0.02855 0.03287 0.03496 0.97% Gravity::interpolate_monopole_grav() 21 0.02832 0.02964 0.03163 0.88% Castro::construct_new_gravity_source() 10 0.02323 0.02499 0.02673 0.74% Castro::computeTemp() 63 0.01912 0.01975 0.02037 0.56% Castro::initialize_do_advance() 10 0.01703 0.01798 0.02006 0.56% Castro::initialize_advance() 10 0.009628 0.0114 0.01356 0.38% FabArray::Saxpy() 20 0.01146 0.01235 0.01313 0.36% FabArray::setDomainBndry() 41 0.009633 0.01157 0.01271 0.35% VisMF::Write(FabArray) 2 0.00876 0.009291 0.01194 0.33% Amr::writePlotFile() 2 0.007699 0.01045 0.01111 0.31% MultiFab::contains_nan() 20 0.009319 0.01012 0.01097 0.30% Castro::construct_old_gravity_source() 10 0.008927 0.009439 0.009832 0.27% Castro::initMFs() 1 0.006635 0.007345 0.007783 0.22% Castro::construct_new_source() 50 0.005962 0.006021 0.006092 0.17% Gravity::get_new_grav_vector() 11 0.003245 0.003745 0.005284 0.15% main() 1 0.003355 0.003635 0.00377 0.10% Amr::coarseTimeStep() 10 0.0009748 0.002305 0.003197 0.09% Gravity::get_old_grav_vector() 10 0.001692 0.002052 0.002297 0.06% Castro::finalize_do_advance() 10 0.001065 0.00111 0.001198 0.03% AmrLevel::FillPatch() 41 0.0008962 0.000976 0.001071 0.03% Amr::timeStep() 10 0.0001745 0.0002175 0.0004217 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002886 0.0003022 0.0003306 0.01% Castro::do_advance_ctu() 10 0.0001565 0.0001737 0.0001911 0.01% Castro::clean_state() 62 0.0001507 0.0001624 0.0001797 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001051 0.0001143 0.0001233 0.00% StateDataPhysBCFunct::() 41 0.0001038 0.0001115 0.0001208 0.00% Castro::Castro() 1 8.361e-05 9.948e-05 0.0001118 0.00% Castro::do_old_sources() 10 7.918e-05 9.447e-05 0.0001112 0.00% Amr::FinalizeInit() 1 3.359e-06 1.651e-05 9.944e-05 0.00% Castro::construct_old_source() 50 6.12e-05 7.749e-05 9.7e-05 0.00% FabArray::ParallelCopy() 41 7.753e-05 8.182e-05 9.073e-05 0.00% FillPatchSingleLevel 41 6.841e-05 7.305e-05 7.651e-05 0.00% Castro::do_new_sources() 10 5.233e-05 5.896e-05 7.156e-05 0.00% Castro::subcycle_advance_ctu() 10 4.69e-05 5.375e-05 5.982e-05 0.00% Amr::defBaseLevel() 1 4.665e-05 5.133e-05 5.835e-05 0.00% Castro::apply_source_to_state() 20 4.104e-05 4.884e-05 5.75e-05 0.00% Castro::advance() 10 3.905e-05 4.46e-05 5.159e-05 0.00% Castro::construct_new_gravity() 10 3.018e-05 3.635e-05 4.679e-05 0.00% Castro::construct_old_gravity() 10 3.242e-05 3.628e-05 4.245e-05 0.00% Castro::expand_state() 10 2.075e-05 2.521e-05 2.911e-05 0.00% Castro::check_for_nan() 20 2.159e-05 2.391e-05 2.682e-05 0.00% Castro::post_timestep() 10 1.423e-05 1.659e-05 1.934e-05 0.00% Castro::post_init() 1 8.686e-06 1.04e-05 1.377e-05 0.00% Castro::computeNewDt() 9 8.162e-06 1.017e-05 1.282e-05 0.00% Amr::InitializeInit() 1 2.836e-06 4.012e-06 6.98e-06 0.00% Castro::computeInitialDt() 2 3.212e-06 3.676e-06 4.224e-06 0.00% Amr::init() 1 1.919e-06 2.403e-06 3.27e-06 0.00% Amr::initialInit() 1 1.444e-06 1.875e-06 3.042e-06 0.00% Other 261 0.01659 0.01898 0.02001 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.608 3.608 100.00% Amr::coarseTimeStep() 10 3.403 3.403 3.403 94.32% Amr::timeStep() 10 3.389 3.39 3.391 94.00% Castro::advance() 10 3.374 3.374 3.374 93.53% Castro::subcycle_advance_ctu() 10 3.292 3.298 3.303 91.55% Castro::do_advance_ctu() 10 3.292 3.298 3.303 91.55% Castro::construct_ctu_hydro_source() 10 2.55 2.552 2.556 70.85% Gravity::make_radial_gravity() 21 0.3159 0.3257 0.3321 9.21% Gravity::get_new_grav_vector() 11 0.2177 0.2191 0.2212 6.13% check_for_negative_density() 10 0.05039 0.1122 0.2089 5.79% AmrLevel::FillPatch() 41 0.1823 0.1968 0.2069 5.73% Castro::construct_new_gravity() 10 0.1951 0.1961 0.1977 5.48% Castro::construct_old_gravity() 10 0.185 0.1915 0.1974 5.47% Gravity::get_old_grav_vector() 10 0.1844 0.1909 0.1968 5.45% Amr::init() 1 0.1929 0.1931 0.1932 5.35% Amr::initialInit() 1 0.1779 0.1781 0.1781 4.94% FillPatchIterator::Initialize 41 0.1544 0.1638 0.1725 4.78% Castro::initialize_do_advance() 10 0.1571 0.1649 0.1707 4.73% Amr::InitializeInit() 1 0.07777 0.1136 0.1511 4.19% Amr::defBaseLevel() 1 0.07777 0.1136 0.1511 4.19% Castro::initData() 1 0.05959 0.09577 0.1327 3.68% FillPatchIterator::FillFromLevel0() 41 0.1119 0.1194 0.1255 3.48% FillPatchSingleLevel 41 0.1117 0.1193 0.1254 3.47% Castro::clean_state() 62 0.1113 0.1154 0.1218 3.38% Castro::expand_state() 10 0.1019 0.1106 0.1175 3.26% Castro::estTimeStep() 21 0.02591 0.06817 0.109 3.02% Amr::FinalizeInit() 1 0.02699 0.06446 0.1003 2.78% Castro::do_old_sources() 10 0.08842 0.09233 0.09476 2.63% FabArray::ParallelCopy() 41 0.07743 0.08687 0.09165 2.54% amrex::Copy() 193 0.07706 0.08036 0.08672 2.40% Castro::initialize_advance() 10 0.06746 0.072 0.07796 2.16% FabArray::setVal() 143 0.06444 0.07018 0.07655 2.12% Castro::computeInitialDt() 2 0.002272 0.0398 0.07565 2.10% Castro::do_new_sources() 10 0.06027 0.0655 0.07122 1.97% Castro::computeTemp() 63 0.06463 0.06734 0.06996 1.94% FabArray::ParallelCopy_finish() 41 0.03689 0.04608 0.05023 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04531 0.04759 0.04976 1.38% Castro::reset_internal_energy(Fab) 1008 0.04501 0.04729 0.04945 1.37% Castro::normalize_species() 62 0.04108 0.04278 0.0474 1.31% FabArray::ParallelCopy_nowait() 41 0.03829 0.0407 0.04214 1.17% StateDataPhysBCFunct::() 41 0.02966 0.03232 0.0354 0.98% StateData::FillBoundary(geom) 41 0.02955 0.03221 0.03528 0.98% Castro::construct_new_source() 50 0.02925 0.03101 0.03269 0.91% Gravity::interpolate_monopole_grav() 21 0.02832 0.02964 0.03163 0.88% Castro::construct_new_gravity_source() 10 0.02323 0.02499 0.02673 0.74% Castro::finalize_do_advance() 10 0.01342 0.02001 0.0261 0.72% Castro::post_init() 1 0.02403 0.02424 0.02431 0.67% Amr::writePlotFile() 2 0.02258 0.02268 0.02282 0.63% Castro::post_timestep() 10 0.01523 0.01578 0.01696 0.47% Castro::apply_source_to_state() 20 0.01152 0.0124 0.01319 0.37% FabArray::Saxpy() 20 0.01146 0.01235 0.01313 0.36% FabArray::setDomainBndry() 41 0.009633 0.01157 0.01271 0.35% Castro::Castro() 1 0.009575 0.01148 0.01223 0.34% VisMF::Write(FabArray) 2 0.00876 0.009291 0.01194 0.33% Castro::check_for_nan() 20 0.009342 0.01015 0.01099 0.30% MultiFab::contains_nan() 20 0.009319 0.01012 0.01097 0.30% Castro::construct_old_source() 50 0.008988 0.009517 0.009921 0.27% Castro::construct_old_gravity_source() 10 0.008927 0.009439 0.009832 0.27% Castro::computeNewDt() 9 0.009472 0.009482 0.009495 0.26% Castro::initMFs() 1 0.006635 0.007345 0.007783 0.22% Other 261 0.02681 0.03028 0.03201 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-32-g28b010126a1b) finalized