Initializing AMReX (24.05-32-g28b010126a1b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-32-g28b010126a1b) initialized Starting run at 05:21:26 UTC on 2024-05-29. Successfully read inputs file ... Castro git describe: 24.05-15-g7893b5c6d AMReX git describe: 24.05-32-g28b010126 Microphysics git describe: 24.05-22-g7b1458be reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015021443 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370741269 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346703239 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34897339 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.374631646 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.334536899 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315795951 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314716435 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315414343 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315965986 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316371954 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.047262666 seconds Ending run at 05:21:30 UTC on 2024-05-29. Run time = 3.608891095 Run time without initialization = 3.405548174 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.608 ... 3.609 ... 3.609 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3759 2.4256 2.4579 68.10% Gravity::make_radial_gravity() 21 0.2925 0.2978 0.3085 8.55% Castro::initData() 1 0.05487 0.09483 0.1375 3.81% check_for_negative_density() 10 0.03697 0.07194 0.1234 3.42% Castro::estTimeStep() 21 0.02377 0.07056 0.1155 3.20% amrex::Copy() 193 0.07084 0.07877 0.08551 2.37% FabArray::setVal() 143 0.0648 0.07144 0.07761 2.15% FabArray::ParallelCopy_finish() 41 0.03809 0.04843 0.05717 1.58% Amr::writePlotFile() 2 0.04763 0.05007 0.05077 1.41% Castro::reset_internal_energy(Fab) 1008 0.04514 0.04698 0.04905 1.36% Castro::normalize_species() 62 0.04093 0.04296 0.04532 1.26% FabArray::ParallelCopy_nowait() 41 0.03613 0.03999 0.04189 1.16% FillPatchIterator::Initialize 41 0.02698 0.03232 0.03431 0.95% StateData::FillBoundary(geom) 41 0.02982 0.0319 0.03339 0.93% Gravity::interpolate_monopole_grav() 21 0.02838 0.02949 0.03035 0.84% Castro::construct_new_gravity_source() 10 0.02304 0.02447 0.02642 0.73% Castro::computeTemp() 63 0.0181 0.01966 0.02065 0.57% Castro::initialize_do_advance() 10 0.01272 0.01728 0.02057 0.57% Castro::initialize_advance() 10 0.0096 0.01134 0.01337 0.37% FabArray::setDomainBndry() 41 0.008559 0.0116 0.01321 0.37% FabArray::Saxpy() 20 0.01157 0.0123 0.0128 0.35% VisMF::Write(FabArray) 2 0.00898 0.009589 0.01201 0.33% MultiFab::contains_nan() 20 0.009775 0.01024 0.01121 0.31% Castro::construct_old_gravity_source() 10 0.007573 0.009386 0.009775 0.27% Castro::initMFs() 1 0.00786 0.008036 0.00861 0.24% Castro::construct_new_source() 50 0.005791 0.005984 0.006161 0.17% Gravity::get_new_grav_vector() 11 0.003213 0.003831 0.004274 0.12% main() 1 0.003218 0.003661 0.003796 0.11% Amr::coarseTimeStep() 10 0.001721 0.002711 0.00337 0.09% Gravity::get_old_grav_vector() 10 0.00183 0.002063 0.002364 0.07% AmrLevel::FillPatch() 41 0.0006303 0.0009661 0.001169 0.03% Castro::finalize_do_advance() 10 0.000356 0.0008954 0.001066 0.03% Amr::timeStep() 10 0.0001775 0.000224 0.0004576 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002812 0.0002939 0.0003122 0.01% Castro::do_advance_ctu() 10 0.000153 0.0001772 0.0002034 0.01% Castro::clean_state() 62 0.0001482 0.0001595 0.0001697 0.00% Castro::Castro() 1 9.508e-05 0.0001173 0.0001342 0.00% StateDataPhysBCFunct::() 41 0.0001036 0.0001116 0.0001295 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001123 0.0001221 0.00% Amr::FinalizeInit() 1 4.364e-06 1.925e-05 0.0001204 0.00% Castro::do_old_sources() 10 8.599e-05 9.108e-05 9.6e-05 0.00% FabArray::ParallelCopy() 41 7.74e-05 8.229e-05 8.899e-05 0.00% Castro::construct_old_source() 50 6.078e-05 7.264e-05 8.582e-05 0.00% FillPatchSingleLevel 41 7.023e-05 7.58e-05 8.062e-05 0.00% Amr::defBaseLevel() 1 5.684e-05 6.482e-05 7.42e-05 0.00% Castro::subcycle_advance_ctu() 10 4.232e-05 5.195e-05 6.937e-05 0.00% Castro::do_new_sources() 10 5.571e-05 5.99e-05 6.446e-05 0.00% Castro::advance() 10 4.25e-05 4.921e-05 5.722e-05 0.00% Castro::apply_source_to_state() 20 4.109e-05 4.32e-05 4.751e-05 0.00% Castro::construct_new_gravity() 10 2.957e-05 3.476e-05 4.19e-05 0.00% Castro::construct_old_gravity() 10 3.297e-05 3.581e-05 3.752e-05 0.00% Castro::post_timestep() 10 1.346e-05 1.895e-05 2.731e-05 0.00% Castro::check_for_nan() 20 2.054e-05 2.274e-05 2.523e-05 0.00% Castro::expand_state() 10 2.187e-05 2.369e-05 2.478e-05 0.00% Castro::post_init() 1 8.042e-06 1.029e-05 1.851e-05 0.00% Castro::computeNewDt() 9 8.003e-06 8.952e-06 1.121e-05 0.00% Amr::InitializeInit() 1 3.07e-06 3.924e-06 6.772e-06 0.00% Castro::computeInitialDt() 2 3.332e-06 3.885e-06 4.737e-06 0.00% Amr::init() 1 2.209e-06 2.558e-06 3.138e-06 0.00% Amr::initialInit() 1 1.773e-06 2.129e-06 2.907e-06 0.00% Other 261 0.01761 0.01975 0.02193 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.608 3.609 3.609 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 92.95% Amr::timeStep() 10 3.341 3.342 3.343 92.62% Castro::advance() 10 3.325 3.326 3.326 92.17% Castro::subcycle_advance_ctu() 10 3.244 3.25 3.254 90.18% Castro::do_advance_ctu() 10 3.244 3.25 3.254 90.17% Castro::construct_ctu_hydro_source() 10 2.516 2.519 2.522 69.89% Gravity::make_radial_gravity() 21 0.3091 0.3148 0.3225 8.94% Gravity::get_new_grav_vector() 11 0.2084 0.2106 0.2124 5.89% AmrLevel::FillPatch() 41 0.1847 0.1964 0.2058 5.70% Amr::init() 1 0.2026 0.2027 0.2027 5.62% Castro::construct_old_gravity() 10 0.1847 0.1885 0.1972 5.47% Gravity::get_old_grav_vector() 10 0.184 0.1879 0.1965 5.44% Castro::construct_new_gravity() 10 0.1859 0.1875 0.189 5.24% Amr::initialInit() 1 0.1874 0.1875 0.1876 5.20% FillPatchIterator::Initialize 41 0.1544 0.1647 0.173 4.79% Castro::initialize_do_advance() 10 0.1493 0.164 0.1711 4.74% Amr::InitializeInit() 1 0.07848 0.1186 0.1605 4.45% Amr::defBaseLevel() 1 0.07847 0.1186 0.1605 4.45% Castro::initData() 1 0.05885 0.09881 0.1414 3.92% FillPatchIterator::FillFromLevel0() 41 0.1093 0.1208 0.1265 3.51% FillPatchSingleLevel 41 0.1092 0.1207 0.1264 3.50% check_for_negative_density() 10 0.03697 0.07194 0.1234 3.42% Castro::clean_state() 62 0.1114 0.1151 0.1196 3.31% Castro::expand_state() 10 0.1002 0.1106 0.1186 3.29% Castro::estTimeStep() 21 0.02377 0.07056 0.1155 3.20% Amr::FinalizeInit() 1 0.02692 0.0689 0.1091 3.02% Castro::do_old_sources() 10 0.09085 0.0927 0.09506 2.63% FabArray::ParallelCopy() 41 0.07726 0.08859 0.09354 2.59% amrex::Copy() 193 0.07084 0.07877 0.08551 2.37% Castro::computeInitialDt() 2 0.002267 0.04416 0.0843 2.34% Castro::initialize_advance() 10 0.06802 0.07196 0.07779 2.16% FabArray::setVal() 143 0.0648 0.07144 0.07761 2.15% Castro::do_new_sources() 10 0.06011 0.06523 0.07073 1.96% Castro::computeTemp() 63 0.06354 0.06693 0.06967 1.93% Amr::writePlotFile() 2 0.06244 0.06256 0.06265 1.74% FabArray::ParallelCopy_finish() 41 0.03809 0.04843 0.05717 1.58% Castro::reset_internal_energy(MultiFab) 63 0.04544 0.04728 0.04937 1.37% Castro::reset_internal_energy(Fab) 1008 0.04514 0.04698 0.04905 1.36% Castro::normalize_species() 62 0.04093 0.04296 0.04532 1.26% FabArray::ParallelCopy_nowait() 41 0.03623 0.04008 0.04198 1.16% StateDataPhysBCFunct::() 41 0.02993 0.03201 0.03349 0.93% StateData::FillBoundary(geom) 41 0.02982 0.0319 0.03339 0.93% Castro::construct_new_source() 50 0.02905 0.03046 0.03243 0.90% Gravity::interpolate_monopole_grav() 21 0.02838 0.02949 0.03035 0.84% Castro::construct_new_gravity_source() 10 0.02304 0.02447 0.02642 0.73% Castro::post_init() 1 0.02401 0.02432 0.02448 0.68% Castro::finalize_do_advance() 10 0.01284 0.01832 0.02318 0.64% Castro::post_timestep() 10 0.01532 0.01576 0.01645 0.46% Castro::Castro() 1 0.0124 0.01307 0.01385 0.38% FabArray::setDomainBndry() 41 0.008559 0.0116 0.01321 0.37% Castro::apply_source_to_state() 20 0.01161 0.01235 0.01285 0.36% FabArray::Saxpy() 20 0.01157 0.0123 0.0128 0.35% VisMF::Write(FabArray) 2 0.00898 0.009589 0.01201 0.33% Castro::check_for_nan() 20 0.009796 0.01026 0.01124 0.31% MultiFab::contains_nan() 20 0.009775 0.01024 0.01121 0.31% Castro::construct_old_source() 50 0.007634 0.009458 0.009848 0.27% Castro::construct_old_gravity_source() 10 0.007573 0.009386 0.009775 0.27% Castro::computeNewDt() 9 0.008972 0.008989 0.009005 0.25% Castro::initMFs() 1 0.00786 0.008036 0.00861 0.24% Other 261 0.02861 0.03134 0.03417 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-32-g28b010126a1b) finalized