Initializing AMReX (24.05-34-ga65f0a581144)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-34-ga65f0a581144) initialized Starting run at 05:32:25 UTC on 2024-05-30. Successfully read inputs file ... Castro git describe: 24.05-15-g7893b5c6d AMReX git describe: 24.05-34-ga65f0a581 Microphysics git describe: 24.05-26-g39cb2a4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014035277 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351297277 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369831648 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330741694 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.364558392 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343748608 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313340179 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314977755 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.35423116 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.32580252 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316012273 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00755824 seconds Ending run at 05:32:28 UTC on 2024-05-30. Run time = 3.591431126 Run time without initialization = 3.39688761 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.591 ... 3.591 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3882 2.4097 2.4648 68.63% Gravity::make_radial_gravity() 21 0.287 0.2978 0.3118 8.68% check_for_negative_density() 10 0.07092 0.1284 0.1521 4.24% Castro::initData() 1 0.05403 0.09299 0.1314 3.66% Castro::estTimeStep() 21 0.02849 0.06985 0.112 3.12% amrex::Copy() 193 0.06212 0.07494 0.08156 2.27% FabArray::setVal() 143 0.06281 0.06788 0.0751 2.09% FabArray::ParallelCopy_finish() 41 0.04187 0.05166 0.07395 2.06% Castro::reset_internal_energy(Fab) 1008 0.04342 0.04623 0.04838 1.35% Castro::normalize_species() 62 0.04124 0.04195 0.04297 1.20% FabArray::ParallelCopy_nowait() 41 0.0359 0.03929 0.04043 1.13% StateData::FillBoundary(geom) 41 0.02893 0.03127 0.03398 0.95% FillPatchIterator::Initialize 41 0.02832 0.03122 0.03327 0.93% Gravity::interpolate_monopole_grav() 21 0.02827 0.02955 0.03051 0.85% Castro::construct_new_gravity_source() 10 0.02151 0.02412 0.02624 0.73% Castro::computeTemp() 63 0.01803 0.01911 0.02053 0.57% Castro::initialize_do_advance() 10 0.01329 0.01688 0.01948 0.54% FabArray::setDomainBndry() 41 0.00851 0.01176 0.01388 0.39% FabArray::Saxpy() 20 0.01016 0.01159 0.01266 0.35% VisMF::Write(FabArray) 2 0.008599 0.00937 0.0125 0.35% Castro::initialize_advance() 10 0.005611 0.009896 0.01243 0.35% MultiFab::contains_nan() 20 0.009534 0.01015 0.0111 0.31% Amr::writePlotFile() 2 0.007559 0.009426 0.01001 0.28% Castro::construct_old_gravity_source() 10 0.00653 0.008711 0.009409 0.26% Castro::initMFs() 1 0.006725 0.007404 0.00781 0.22% Castro::construct_new_source() 50 0.005411 0.005835 0.006013 0.17% Gravity::get_new_grav_vector() 11 0.002664 0.003787 0.00534 0.15% main() 1 0.003448 0.003763 0.004057 0.11% Amr::coarseTimeStep() 10 0.001474 0.002087 0.002691 0.07% Gravity::get_old_grav_vector() 10 0.001605 0.001943 0.002196 0.06% Castro::finalize_do_advance() 10 0.000392 0.001001 0.001475 0.04% AmrLevel::FillPatch() 41 0.0006777 0.0009548 0.001088 0.03% Amr::timeStep() 10 0.0001525 0.000212 0.0004207 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002854 0.0002936 0.0003011 0.01% Castro::clean_state() 62 0.0001465 0.0001621 0.0001842 0.01% Castro::do_advance_ctu() 10 0.0001503 0.0001637 0.0001796 0.00% Castro::Castro() 1 7.525e-05 9.695e-05 0.0001145 0.00% FillPatchIterator::FillFromLevel0() 41 9.704e-05 0.0001053 0.0001136 0.00% StateDataPhysBCFunct::() 41 9.639e-05 0.0001032 0.0001135 0.00% Castro::do_old_sources() 10 7.494e-05 8.551e-05 9.84e-05 0.00% FabArray::ParallelCopy() 41 6.725e-05 7.83e-05 8.795e-05 0.00% Castro::construct_old_source() 50 4.809e-05 6.693e-05 7.726e-05 0.00% FillPatchSingleLevel 41 6.793e-05 7.1e-05 7.465e-05 0.00% Amr::FinalizeInit() 1 2.954e-06 1.204e-05 6.632e-05 0.00% Amr::defBaseLevel() 1 4.443e-05 5.034e-05 6.213e-05 0.00% Castro::subcycle_advance_ctu() 10 4.669e-05 5.297e-05 6.188e-05 0.00% Castro::do_new_sources() 10 5.002e-05 5.51e-05 5.952e-05 0.00% Castro::advance() 10 4.065e-05 4.41e-05 5.227e-05 0.00% Castro::apply_source_to_state() 20 3.797e-05 4.075e-05 4.775e-05 0.00% Castro::construct_old_gravity() 10 3.219e-05 3.554e-05 4.134e-05 0.00% Castro::construct_new_gravity() 10 2.795e-05 3.182e-05 3.565e-05 0.00% Castro::check_for_nan() 20 1.902e-05 2.24e-05 2.894e-05 0.00% Castro::expand_state() 10 1.853e-05 2.134e-05 2.289e-05 0.00% Castro::post_timestep() 10 1.412e-05 1.622e-05 1.948e-05 0.00% Castro::computeNewDt() 9 7.855e-06 1.012e-05 1.374e-05 0.00% Castro::post_init() 1 7.789e-06 9.444e-06 1.372e-05 0.00% Amr::InitializeInit() 1 2.873e-06 3.918e-06 7.086e-06 0.00% Castro::computeInitialDt() 2 3.292e-06 3.712e-06 4.458e-06 0.00% Amr::init() 1 1.788e-06 2.446e-06 3.028e-06 0.00% Amr::initialInit() 1 1.614e-06 1.869e-06 2.132e-06 0.00% Other 261 0.01522 0.01882 0.02047 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.591 3.591 3.591 100.00% Amr::coarseTimeStep() 10 3.385 3.385 3.385 94.26% Amr::timeStep() 10 3.373 3.373 3.374 93.94% Castro::advance() 10 3.357 3.358 3.358 93.51% Castro::subcycle_advance_ctu() 10 3.28 3.286 3.293 91.69% Castro::do_advance_ctu() 10 3.28 3.286 3.293 91.69% Castro::construct_ctu_hydro_source() 10 2.556 2.559 2.563 71.36% Gravity::make_radial_gravity() 21 0.3024 0.3137 0.3242 9.03% Gravity::get_new_grav_vector() 11 0.2096 0.2109 0.2127 5.92% AmrLevel::FillPatch() 41 0.1856 0.1965 0.2054 5.72% Castro::construct_old_gravity() 10 0.1813 0.1872 0.195 5.43% Amr::init() 1 0.1937 0.1939 0.194 5.40% Gravity::get_old_grav_vector() 10 0.1806 0.1866 0.194 5.40% Castro::construct_new_gravity() 10 0.1869 0.1885 0.19 5.29% Amr::initialInit() 1 0.1795 0.1801 0.1803 5.02% FillPatchIterator::Initialize 41 0.1549 0.1656 0.176 4.90% Castro::initialize_do_advance() 10 0.1559 0.1632 0.1674 4.66% Amr::InitializeInit() 1 0.07554 0.1147 0.1541 4.29% Amr::defBaseLevel() 1 0.07553 0.1147 0.1541 4.29% check_for_negative_density() 10 0.07092 0.1284 0.1521 4.24% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1227 0.1392 3.88% FillPatchSingleLevel 41 0.1155 0.1226 0.1391 3.87% Castro::initData() 1 0.05783 0.09672 0.1351 3.76% Castro::clean_state() 62 0.1088 0.1127 0.1171 3.26% Castro::expand_state() 10 0.1024 0.1109 0.1165 3.24% Castro::estTimeStep() 21 0.02849 0.06985 0.112 3.12% FabArray::ParallelCopy() 41 0.08134 0.09111 0.11 3.06% Amr::FinalizeInit() 1 0.02602 0.06538 0.1047 2.92% Castro::do_old_sources() 10 0.08569 0.0902 0.09368 2.61% amrex::Copy() 193 0.06212 0.07494 0.08156 2.27% Castro::computeInitialDt() 2 0.002221 0.04155 0.0808 2.25% FabArray::setVal() 143 0.06281 0.06788 0.0751 2.09% FabArray::ParallelCopy_finish() 41 0.04187 0.05166 0.07395 2.06% Castro::initialize_advance() 10 0.06064 0.06822 0.07384 2.06% Castro::do_new_sources() 10 0.0547 0.06307 0.06987 1.95% Castro::computeTemp() 63 0.06175 0.06564 0.06921 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04372 0.04652 0.04868 1.36% Castro::reset_internal_energy(Fab) 1008 0.04342 0.04623 0.04838 1.35% Castro::normalize_species() 62 0.04124 0.04195 0.04297 1.20% FabArray::ParallelCopy_nowait() 41 0.03599 0.03937 0.04051 1.13% StateDataPhysBCFunct::() 41 0.02902 0.03137 0.03409 0.95% StateData::FillBoundary(geom) 41 0.02893 0.03127 0.03398 0.95% Castro::construct_new_source() 50 0.02692 0.02996 0.03226 0.90% Gravity::interpolate_monopole_grav() 21 0.02827 0.02955 0.03051 0.85% Castro::finalize_do_advance() 10 0.0125 0.02027 0.02851 0.79% Castro::construct_new_gravity_source() 10 0.02151 0.02412 0.02624 0.73% Castro::post_init() 1 0.02309 0.02342 0.02356 0.66% Amr::writePlotFile() 2 0.02132 0.02142 0.02188 0.61% Castro::post_timestep() 10 0.01495 0.01535 0.01577 0.44% FabArray::setDomainBndry() 41 0.00851 0.01176 0.01388 0.39% Castro::apply_source_to_state() 20 0.0102 0.01163 0.0127 0.35% FabArray::Saxpy() 20 0.01016 0.01159 0.01266 0.35% VisMF::Write(FabArray) 2 0.008599 0.00937 0.0125 0.35% Castro::Castro() 1 0.009489 0.01157 0.0124 0.35% Castro::check_for_nan() 20 0.009555 0.01017 0.01112 0.31% MultiFab::contains_nan() 20 0.009534 0.01015 0.0111 0.31% Castro::construct_old_source() 50 0.006578 0.008778 0.009487 0.26% Castro::construct_old_gravity_source() 10 0.00653 0.008711 0.009409 0.26% Castro::computeNewDt() 9 0.009028 0.009045 0.009071 0.25% Castro::initMFs() 1 0.006725 0.007404 0.00781 0.22% Other 261 0.02513 0.03001 0.03285 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-34-ga65f0a581144) finalized