Initializing AMReX (24.05-34-ga65f0a581144)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.05-34-ga65f0a581144) initialized Starting run at 05:28:24 UTC on 2024-05-31. Successfully read inputs file ... Castro git describe: 24.05-17-gfb7562524 AMReX git describe: 24.05-34-ga65f0a581 Microphysics git describe: 24.05-27-g1667a387 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013807209 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348351698 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352513665 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331618415 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.34788315 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370105719 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315263645 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313654211 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314569126 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315969598 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31472644 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007581652 seconds Ending run at 05:28:28 UTC on 2024-05-31. Run time = 3.532214579 Run time without initialization = 3.336902648 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.531 ... 3.532 ... 3.532 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3122 2.3728 2.4286 68.75% Gravity::make_radial_gravity() 21 0.2928 0.3114 0.3339 9.45% check_for_negative_density() 10 0.01601 0.07557 0.1413 4.00% Castro::initData() 1 0.04758 0.09295 0.1334 3.78% Castro::estTimeStep() 21 0.0238 0.07486 0.1245 3.52% amrex::Copy() 193 0.05888 0.07838 0.09041 2.56% FabArray::ParallelCopy_finish() 41 0.05048 0.06018 0.08803 2.49% FabArray::setVal() 143 0.06354 0.06791 0.07861 2.23% Castro::reset_internal_energy(Fab) 1008 0.04326 0.04585 0.04787 1.36% Castro::normalize_species() 62 0.04127 0.04315 0.04493 1.27% FabArray::ParallelCopy_nowait() 41 0.03352 0.03897 0.04064 1.15% StateData::FillBoundary(geom) 41 0.02877 0.03161 0.03466 0.98% FillPatchIterator::Initialize 41 0.02817 0.03107 0.03361 0.95% Gravity::interpolate_monopole_grav() 21 0.02835 0.02987 0.03065 0.87% Castro::construct_new_gravity_source() 10 0.02344 0.02441 0.02759 0.78% Castro::computeTemp() 63 0.01796 0.01909 0.02 0.57% Castro::initialize_do_advance() 10 0.01265 0.01609 0.01808 0.51% MultiFab::contains_nan() 20 0.009031 0.01069 0.01351 0.38% FabArray::Saxpy() 20 0.01075 0.01197 0.01304 0.37% FabArray::setDomainBndry() 41 0.008688 0.01092 0.01287 0.36% Castro::initialize_advance() 10 0.005335 0.01003 0.01252 0.35% VisMF::Write(FabArray) 2 0.008722 0.009261 0.01212 0.34% Amr::writePlotFile() 2 0.00752 0.009414 0.009856 0.28% Castro::construct_old_gravity_source() 10 0.006412 0.008819 0.009655 0.27% Castro::initMFs() 1 0.006373 0.007113 0.007482 0.21% Castro::construct_new_source() 50 0.005089 0.005872 0.006132 0.17% main() 1 0.002959 0.003684 0.003965 0.11% Gravity::get_new_grav_vector() 11 0.00265 0.003304 0.003702 0.10% Amr::coarseTimeStep() 10 0.0009828 0.002557 0.00314 0.09% Gravity::get_old_grav_vector() 10 0.001442 0.001922 0.002309 0.07% Castro::finalize_do_advance() 10 0.0004306 0.0009736 0.00121 0.03% AmrLevel::FillPatch() 41 0.0007908 0.0009869 0.001084 0.03% Amr::timeStep() 10 0.0001642 0.0002211 0.0004563 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002774 0.0002919 0.0003137 0.01% Castro::do_advance_ctu() 10 0.0001569 0.0001807 0.0002091 0.01% Castro::clean_state() 62 0.0001385 0.0001577 0.0001778 0.01% StateDataPhysBCFunct::() 41 9.823e-05 0.0001196 0.000169 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001043 0.0001194 0.0001444 0.00% Castro::Castro() 1 7.093e-05 9.358e-05 0.000111 0.00% FillPatchSingleLevel 41 7.044e-05 7.955e-05 0.0001071 0.00% Castro::do_old_sources() 10 7.249e-05 9.102e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 7.252e-05 8.437e-05 9.339e-05 0.00% Amr::FinalizeInit() 1 3.422e-06 1.365e-05 7.807e-05 0.00% Castro::construct_old_source() 50 5.747e-05 6.814e-05 7.758e-05 0.00% Castro::subcycle_advance_ctu() 10 4.085e-05 5.108e-05 6.583e-05 0.00% Castro::do_new_sources() 10 4.984e-05 5.832e-05 6.551e-05 0.00% Amr::defBaseLevel() 1 4.61e-05 5.166e-05 6.201e-05 0.00% Castro::advance() 10 3.953e-05 4.331e-05 5.085e-05 0.00% Castro::apply_source_to_state() 20 3.712e-05 4.25e-05 4.799e-05 0.00% Castro::construct_new_gravity() 10 2.987e-05 3.535e-05 4.72e-05 0.00% Castro::construct_old_gravity() 10 3.275e-05 3.735e-05 4.608e-05 0.00% Castro::check_for_nan() 20 2.04e-05 2.294e-05 3.149e-05 0.00% Castro::expand_state() 10 2.167e-05 2.462e-05 2.936e-05 0.00% Castro::post_timestep() 10 1.66e-05 1.848e-05 2.211e-05 0.00% Castro::computeNewDt() 9 8.291e-06 9.845e-06 1.232e-05 0.00% Castro::post_init() 1 8.239e-06 9.303e-06 1.018e-05 0.00% Amr::initialInit() 1 1.522e-06 2.576e-06 7.781e-06 0.00% Amr::InitializeInit() 1 3.05e-06 3.686e-06 6.501e-06 0.00% Castro::computeInitialDt() 2 3.272e-06 3.86e-06 5.409e-06 0.00% Amr::init() 1 1.691e-06 2.335e-06 3.539e-06 0.00% Other 261 0.01501 0.01836 0.01978 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.531 3.532 3.532 100.00% Amr::coarseTimeStep() 10 3.325 3.325 3.325 94.14% Amr::timeStep() 10 3.312 3.313 3.314 93.82% Castro::advance() 10 3.297 3.297 3.298 93.36% Castro::subcycle_advance_ctu() 10 3.216 3.224 3.231 91.47% Castro::do_advance_ctu() 10 3.216 3.224 3.231 91.47% Castro::construct_ctu_hydro_source() 10 2.465 2.469 2.473 70.01% Gravity::make_radial_gravity() 21 0.3078 0.3285 0.3469 9.82% AmrLevel::FillPatch() 41 0.189 0.2055 0.2185 6.19% Gravity::get_new_grav_vector() 11 0.2153 0.2161 0.2172 6.15% Castro::construct_old_gravity() 10 0.1808 0.1979 0.2128 6.02% Gravity::get_old_grav_vector() 10 0.1797 0.1969 0.2118 6.00% Amr::init() 1 0.1946 0.1947 0.1948 5.51% Castro::construct_new_gravity() 10 0.1929 0.1937 0.1945 5.51% Castro::initialize_do_advance() 10 0.1581 0.1691 0.1884 5.33% FillPatchIterator::Initialize 41 0.1586 0.1733 0.1877 5.31% Amr::initialInit() 1 0.1805 0.1811 0.1812 5.13% Amr::InitializeInit() 1 0.06622 0.114 0.1551 4.39% Amr::defBaseLevel() 1 0.06621 0.114 0.1551 4.39% FillPatchIterator::FillFromLevel0() 41 0.1191 0.1313 0.1509 4.27% FillPatchSingleLevel 41 0.119 0.1311 0.1507 4.27% check_for_negative_density() 10 0.01601 0.07557 0.1413 4.00% Castro::initData() 1 0.05103 0.09673 0.1373 3.89% Castro::expand_state() 10 0.1029 0.1168 0.1344 3.81% Castro::estTimeStep() 21 0.0238 0.07486 0.1245 3.52% FabArray::ParallelCopy() 41 0.08889 0.09932 0.1217 3.45% Castro::clean_state() 62 0.11 0.1135 0.1179 3.34% Amr::FinalizeInit() 1 0.02601 0.06712 0.115 3.26% Castro::do_old_sources() 10 0.09132 0.09307 0.09475 2.68% Castro::computeInitialDt() 2 0.002323 0.04343 0.09123 2.58% amrex::Copy() 193 0.05888 0.07838 0.09041 2.56% FabArray::ParallelCopy_finish() 41 0.05048 0.06018 0.08803 2.49% FabArray::setVal() 143 0.06354 0.06791 0.07861 2.23% Castro::initialize_advance() 10 0.06199 0.06911 0.07779 2.20% Castro::do_new_sources() 10 0.06095 0.06356 0.07272 2.06% Castro::computeTemp() 63 0.06154 0.06524 0.06766 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04358 0.04614 0.04816 1.36% Castro::reset_internal_energy(Fab) 1008 0.04326 0.04585 0.04787 1.36% Castro::normalize_species() 62 0.04127 0.04315 0.04493 1.27% FabArray::ParallelCopy_nowait() 41 0.03363 0.03906 0.04071 1.15% StateDataPhysBCFunct::() 41 0.02887 0.03173 0.03483 0.99% StateData::FillBoundary(geom) 41 0.02877 0.03161 0.03466 0.98% Castro::construct_new_source() 50 0.02957 0.03028 0.03358 0.95% Gravity::interpolate_monopole_grav() 21 0.02835 0.02987 0.03065 0.87% Castro::construct_new_gravity_source() 10 0.02344 0.02441 0.02759 0.78% Castro::finalize_do_advance() 10 0.01338 0.02322 0.02621 0.74% Castro::post_init() 1 0.02283 0.02324 0.0234 0.66% Amr::writePlotFile() 2 0.02122 0.02132 0.0217 0.61% Castro::post_timestep() 10 0.01506 0.01545 0.0162 0.46% Castro::check_for_nan() 20 0.009052 0.01071 0.01354 0.38% MultiFab::contains_nan() 20 0.009031 0.01069 0.01351 0.38% Castro::apply_source_to_state() 20 0.01079 0.01202 0.01308 0.37% FabArray::Saxpy() 20 0.01075 0.01197 0.01304 0.37% FabArray::setDomainBndry() 41 0.008688 0.01092 0.01287 0.36% VisMF::Write(FabArray) 2 0.008722 0.009261 0.01212 0.34% Castro::Castro() 1 0.009394 0.01105 0.01172 0.33% Castro::construct_old_source() 50 0.006474 0.008887 0.009729 0.28% Castro::construct_old_gravity_source() 10 0.006412 0.008819 0.009655 0.27% Castro::computeNewDt() 9 0.009176 0.009193 0.009202 0.26% Castro::initMFs() 1 0.006373 0.007113 0.007482 0.21% Other 261 0.0251 0.02951 0.03216 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.05-34-ga65f0a581144) finalized