Initializing AMReX (24.06-3-g0a691f6f4804)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-3-g0a691f6f4804) initialized Starting run at 05:34:17 UTC on 2024-06-03. Successfully read inputs file ... Castro git describe: 24.06 AMReX git describe: 24.06-3-g0a691f6f4 Microphysics git describe: 24.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014862219 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372321759 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337615462 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358399423 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373298297 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329062584 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312972282 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31510841 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314777571 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31566682 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314268007 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007843212 seconds Ending run at 05:34:21 UTC on 2024-06-03. Run time = 3.578459901 Run time without initialization = 3.35619045 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.578 ... 3.578 ... 3.579 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3608 2.4112 2.4643 68.86% Gravity::make_radial_gravity() 21 0.2968 0.3003 0.3111 8.69% Castro::initData() 1 0.04898 0.09732 0.1501 4.19% check_for_negative_density() 10 0.0418 0.09581 0.1492 4.17% Castro::estTimeStep() 21 0.03295 0.08658 0.1425 3.98% amrex::Copy() 193 0.06384 0.07484 0.08114 2.27% FabArray::ParallelCopy_finish() 41 0.0338 0.04753 0.07549 2.11% FabArray::setVal() 143 0.05873 0.06469 0.07139 1.99% Castro::reset_internal_energy(Fab) 1008 0.04445 0.04688 0.04893 1.37% Castro::normalize_species() 62 0.04132 0.0426 0.04362 1.22% FabArray::ParallelCopy_nowait() 41 0.03432 0.03883 0.04018 1.12% StateData::FillBoundary(geom) 41 0.02897 0.03129 0.03402 0.95% FillPatchIterator::Initialize 41 0.02776 0.0312 0.03364 0.94% Gravity::interpolate_monopole_grav() 21 0.02766 0.02952 0.03061 0.86% Castro::construct_new_gravity_source() 10 0.02243 0.02422 0.02679 0.75% Castro::computeTemp() 63 0.01897 0.01966 0.0203 0.57% Castro::initialize_do_advance() 10 0.01249 0.01613 0.01837 0.51% Amr::writePlotFile() 2 0.008204 0.0114 0.01315 0.37% FabArray::Saxpy() 20 0.01041 0.01175 0.01248 0.35% VisMF::Write(FabArray) 2 0.008526 0.009281 0.01212 0.34% Castro::initialize_advance() 10 0.005552 0.009665 0.01196 0.33% FabArray::setDomainBndry() 41 0.008461 0.01063 0.01151 0.32% MultiFab::contains_nan() 20 0.009083 0.009756 0.01115 0.31% Castro::initMFs() 1 0.006619 0.007958 0.01007 0.28% Castro::construct_old_gravity_source() 10 0.006613 0.008867 0.009296 0.26% Castro::construct_new_source() 50 0.005359 0.005879 0.006147 0.17% main() 1 0.003058 0.003698 0.004106 0.11% Gravity::get_new_grav_vector() 11 0.003021 0.003423 0.003855 0.11% Amr::coarseTimeStep() 10 0.001431 0.002132 0.002796 0.08% Gravity::get_old_grav_vector() 10 0.001526 0.001971 0.002312 0.06% Castro::finalize_do_advance() 10 0.0004033 0.000903 0.001438 0.04% AmrLevel::FillPatch() 41 0.0006667 0.0008067 0.0009642 0.03% Amr::timeStep() 10 0.0001668 0.000222 0.000491 0.01% Castro::do_advance_ctu() 10 0.0001572 0.000196 0.0003392 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0002978 0.0003098 0.01% Castro::clean_state() 62 0.0001421 0.0001634 0.0001799 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001018 0.0001182 0.0001349 0.00% StateDataPhysBCFunct::() 41 9.172e-05 0.0001068 0.0001209 0.00% Castro::construct_old_source() 50 5.672e-05 7.604e-05 0.0001015 0.00% Castro::Castro() 1 7.117e-05 9.018e-05 9.616e-05 0.00% Castro::do_old_sources() 10 7.664e-05 8.721e-05 9.146e-05 0.00% FabArray::ParallelCopy() 41 6.899e-05 7.739e-05 8.523e-05 0.00% FillPatchSingleLevel 41 6.757e-05 7.457e-05 8.022e-05 0.00% Amr::FinalizeInit() 1 4.216e-06 1.378e-05 7.261e-05 0.00% Castro::subcycle_advance_ctu() 10 4.582e-05 5.518e-05 7.046e-05 0.00% Castro::do_new_sources() 10 5.232e-05 5.955e-05 6.945e-05 0.00% Amr::defBaseLevel() 1 4.987e-05 6.13e-05 6.74e-05 0.00% Castro::apply_source_to_state() 20 3.947e-05 4.41e-05 5.625e-05 0.00% Castro::advance() 10 4.23e-05 4.534e-05 4.905e-05 0.00% Castro::construct_old_gravity() 10 3.115e-05 3.616e-05 4.06e-05 0.00% Castro::construct_new_gravity() 10 2.82e-05 3.366e-05 3.809e-05 0.00% Castro::check_for_nan() 20 2.095e-05 2.469e-05 3.219e-05 0.00% Castro::expand_state() 10 2e-05 2.327e-05 2.587e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.019e-05 1.329e-05 2.017e-05 0.00% Castro::post_timestep() 10 1.352e-05 1.634e-05 1.861e-05 0.00% Castro::post_init() 1 8.143e-06 1.1e-05 1.74e-05 0.00% Castro::computeNewDt() 9 7.621e-06 1.013e-05 1.187e-05 0.00% Amr::InitializeInit() 1 3.033e-06 3.992e-06 5.944e-06 0.00% Castro::computeInitialDt() 2 3.469e-06 4.082e-06 4.826e-06 0.00% Amr::init() 1 1.734e-06 2.374e-06 2.922e-06 0.00% Amr::initialInit() 1 1.398e-06 1.92e-06 2.438e-06 0.00% Other 260 0.01607 0.0194 0.02268 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.578 3.578 3.579 100.00% Amr::coarseTimeStep() 10 3.344 3.344 3.344 93.46% Amr::timeStep() 10 3.331 3.331 3.332 93.12% Castro::advance() 10 3.315 3.315 3.316 92.67% Castro::subcycle_advance_ctu() 10 3.24 3.245 3.254 90.92% Castro::do_advance_ctu() 10 3.24 3.245 3.254 90.92% Castro::construct_ctu_hydro_source() 10 2.526 2.528 2.531 70.73% Gravity::make_radial_gravity() 21 0.313 0.3163 0.3251 9.09% Amr::init() 1 0.2214 0.2216 0.2217 6.19% Gravity::get_new_grav_vector() 11 0.211 0.2121 0.214 5.98% Amr::initialInit() 1 0.2059 0.2063 0.2068 5.78% AmrLevel::FillPatch() 41 0.1791 0.1905 0.2002 5.59% Castro::construct_old_gravity() 10 0.182 0.1858 0.1939 5.42% Gravity::get_old_grav_vector() 10 0.1813 0.1852 0.1933 5.40% Castro::construct_new_gravity() 10 0.1861 0.1868 0.1886 5.27% Amr::InitializeInit() 1 0.06741 0.1198 0.1767 4.94% Amr::defBaseLevel() 1 0.06741 0.1198 0.1767 4.94% FillPatchIterator::Initialize 41 0.1478 0.1599 0.1755 4.90% Castro::initialize_do_advance() 10 0.1535 0.1599 0.1649 4.61% Castro::initData() 1 0.05229 0.101 0.1542 4.31% check_for_negative_density() 10 0.0418 0.09581 0.1492 4.17% Castro::estTimeStep() 21 0.03295 0.08658 0.1425 3.98% FillPatchIterator::FillFromLevel0() 41 0.1043 0.1181 0.1392 3.89% Amr::FinalizeInit() 1 0.02993 0.0865 0.1391 3.89% FillPatchSingleLevel 41 0.1042 0.118 0.1391 3.89% Castro::clean_state() 62 0.1102 0.1146 0.1178 3.29% Castro::expand_state() 10 0.1009 0.1082 0.1143 3.19% Castro::computeInitialDt() 2 0.002672 0.05978 0.1121 3.13% FabArray::ParallelCopy() 41 0.07268 0.08652 0.11 3.07% Castro::do_old_sources() 10 0.08634 0.08869 0.09095 2.54% amrex::Copy() 193 0.06384 0.07484 0.08114 2.27% FabArray::ParallelCopy_finish() 41 0.0338 0.04753 0.07549 2.11% Castro::initialize_advance() 10 0.05786 0.06699 0.07205 2.01% FabArray::setVal() 143 0.05873 0.06469 0.07139 1.99% Castro::computeTemp() 63 0.06371 0.06685 0.06949 1.94% Castro::do_new_sources() 10 0.05893 0.063 0.06877 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04474 0.04718 0.04924 1.38% Castro::reset_internal_energy(Fab) 1008 0.04445 0.04688 0.04893 1.37% Castro::normalize_species() 62 0.04132 0.0426 0.04362 1.22% FabArray::ParallelCopy_nowait() 41 0.03442 0.03891 0.04027 1.13% StateDataPhysBCFunct::() 41 0.02907 0.03139 0.03414 0.95% StateData::FillBoundary(geom) 41 0.02897 0.03129 0.03402 0.95% Castro::construct_new_source() 50 0.02838 0.0301 0.03294 0.92% Gravity::interpolate_monopole_grav() 21 0.02766 0.02952 0.03061 0.86% Castro::post_init() 1 0.02582 0.02641 0.02691 0.75% Castro::construct_new_gravity_source() 10 0.02243 0.02422 0.02679 0.75% Amr::writePlotFile() 2 0.02271 0.02325 0.0237 0.66% Castro::finalize_do_advance() 10 0.01221 0.01831 0.02193 0.61% Castro::post_timestep() 10 0.01549 0.01582 0.01636 0.46% Castro::Castro() 1 0.009356 0.01181 0.01417 0.40% Castro::apply_source_to_state() 20 0.01045 0.0118 0.01253 0.35% FabArray::Saxpy() 20 0.01041 0.01175 0.01248 0.35% VisMF::Write(FabArray) 2 0.008526 0.009281 0.01212 0.34% FabArray::setDomainBndry() 41 0.008461 0.01063 0.01151 0.32% Castro::check_for_nan() 20 0.009104 0.00978 0.01118 0.31% MultiFab::contains_nan() 20 0.009083 0.009756 0.01115 0.31% Castro::initMFs() 1 0.006619 0.007958 0.01007 0.28% Castro::computeNewDt() 9 0.009388 0.009404 0.009414 0.26% Castro::construct_old_source() 50 0.006669 0.008943 0.009373 0.26% Castro::construct_old_gravity_source() 10 0.006613 0.008867 0.009296 0.26% AmrLevel::AmrLevel(dm) 1 0.005479 0.006647 0.008198 0.23% Other 260 0.0206 0.02461 0.02861 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 40 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-3-g0a691f6f4804) finalized