Initializing AMReX (24.06-3-g0a691f6f4804)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-3-g0a691f6f4804) initialized Starting run at 05:24:20 UTC on 2024-06-04. Successfully read inputs file ... Castro git describe: 24.06 AMReX git describe: 24.06-3-g0a691f6f4 Microphysics git describe: 24.06-2-gd928c208 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014922215 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359473816 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347930458 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335045817 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373224071 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342260082 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315362012 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316043853 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316165812 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316494422 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315920715 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007767522 seconds Ending run at 05:24:24 UTC on 2024-06-04. Run time = 3.543595738 Run time without initialization = 3.350384797 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3741 2.4010 2.4594 69.40% Gravity::make_radial_gravity() 21 0.2948 0.3032 0.3113 8.78% Castro::initData() 1 0.04782 0.09065 0.1295 3.66% Castro::estTimeStep() 21 0.03043 0.07476 0.1235 3.48% check_for_negative_density() 10 0.01764 0.08053 0.1087 3.07% amrex::Copy() 193 0.06162 0.07335 0.0816 2.30% FabArray::ParallelCopy_finish() 41 0.03992 0.05171 0.08159 2.30% FabArray::setVal() 143 0.06275 0.06874 0.08063 2.28% Castro::normalize_species() 62 0.04109 0.04326 0.05369 1.52% Castro::reset_internal_energy(Fab) 1008 0.04311 0.04614 0.04856 1.37% FabArray::ParallelCopy_nowait() 41 0.03347 0.03798 0.03967 1.12% FillPatchIterator::Initialize 41 0.02626 0.0313 0.03454 0.97% StateData::FillBoundary(geom) 41 0.02834 0.03108 0.03317 0.94% Gravity::interpolate_monopole_grav() 21 0.02843 0.02958 0.03038 0.86% Castro::construct_new_gravity_source() 10 0.02184 0.02417 0.02774 0.78% Castro::computeTemp() 63 0.01735 0.0191 0.02061 0.58% Castro::initialize_do_advance() 10 0.01268 0.01632 0.01971 0.56% VisMF::Write(FabArray) 2 0.008951 0.009759 0.01338 0.38% FabArray::setDomainBndry() 41 0.008347 0.01079 0.01312 0.37% Castro::initialize_advance() 10 0.00612 0.01007 0.01284 0.36% FabArray::Saxpy() 20 0.01049 0.01171 0.01265 0.36% MultiFab::contains_nan() 20 0.009275 0.01013 0.01115 0.31% Amr::writePlotFile() 2 0.007746 0.01023 0.01085 0.31% Castro::construct_old_gravity_source() 10 0.006696 0.008721 0.009266 0.26% Castro::initMFs() 1 0.00664 0.007351 0.007729 0.22% Castro::construct_new_source() 50 0.005545 0.005904 0.006223 0.18% Amr::coarseTimeStep() 10 0.001554 0.004148 0.005448 0.15% Gravity::get_new_grav_vector() 11 0.003147 0.00367 0.005148 0.15% main() 1 0.003493 0.003733 0.003947 0.11% Gravity::get_old_grav_vector() 10 0.001498 0.001889 0.002207 0.06% AmrLevel::FillPatch() 41 0.0006422 0.0009694 0.001217 0.03% Castro::finalize_do_advance() 10 0.0003627 0.0009757 0.001168 0.03% Amr::timeStep() 10 0.0001623 0.0002182 0.0004085 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002729 0.0002922 0.0003217 0.01% Castro::do_advance_ctu() 10 0.0001399 0.0001672 0.0002094 0.01% Castro::clean_state() 62 0.000137 0.0001733 0.000209 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001035 0.0001139 0.0001317 0.00% StateDataPhysBCFunct::() 41 9.623e-05 0.0001064 0.0001135 0.00% Castro::Castro() 1 7.547e-05 8.837e-05 9.914e-05 0.00% Castro::do_old_sources() 10 7.888e-05 8.819e-05 9.476e-05 0.00% FillPatchSingleLevel 41 6.856e-05 7.643e-05 8.825e-05 0.00% Castro::construct_old_source() 50 5.892e-05 7.319e-05 8.674e-05 0.00% FabArray::ParallelCopy() 41 7.173e-05 7.528e-05 7.88e-05 0.00% Amr::FinalizeInit() 1 3.545e-06 1.309e-05 7.145e-05 0.00% Castro::do_new_sources() 10 4.985e-05 5.69e-05 6.25e-05 0.00% Amr::defBaseLevel() 1 4.768e-05 5.349e-05 6.224e-05 0.00% Castro::subcycle_advance_ctu() 10 4.309e-05 4.805e-05 5.508e-05 0.00% Castro::advance() 10 3.901e-05 4.384e-05 5.005e-05 0.00% Castro::apply_source_to_state() 20 3.691e-05 4.274e-05 4.9e-05 0.00% Castro::construct_new_gravity() 10 2.978e-05 3.391e-05 4.485e-05 0.00% Castro::construct_old_gravity() 10 3.174e-05 3.416e-05 4.094e-05 0.00% Castro::check_for_nan() 20 1.942e-05 2.395e-05 3.893e-05 0.00% Castro::computeNewDt() 9 7.716e-06 1.343e-05 3.657e-05 0.00% Castro::expand_state() 10 1.782e-05 2.244e-05 2.906e-05 0.00% Castro::post_timestep() 10 1.433e-05 1.601e-05 1.72e-05 0.00% Castro::post_init() 1 9.1e-06 1.189e-05 1.707e-05 0.00% Amr::InitializeInit() 1 2.996e-06 4.185e-06 7.496e-06 0.00% Castro::computeInitialDt() 2 3.374e-06 3.92e-06 4.624e-06 0.00% Amr::init() 1 1.926e-06 2.302e-06 3.345e-06 0.00% Amr::initialInit() 1 1.477e-06 1.697e-06 1.881e-06 0.00% Other 261 0.01498 0.01867 0.02046 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 94.22% Amr::timeStep() 10 3.32 3.321 3.323 93.79% Castro::advance() 10 3.305 3.305 3.306 93.30% Castro::subcycle_advance_ctu() 10 3.222 3.232 3.238 91.39% Castro::do_advance_ctu() 10 3.222 3.232 3.238 91.39% Castro::construct_ctu_hydro_source() 10 2.499 2.503 2.507 70.74% Gravity::make_radial_gravity() 21 0.3103 0.3182 0.3254 9.18% Gravity::get_new_grav_vector() 11 0.2088 0.2121 0.2146 6.06% AmrLevel::FillPatch() 41 0.1781 0.1933 0.2067 5.83% Castro::construct_old_gravity() 10 0.1827 0.1879 0.1938 5.47% Gravity::get_old_grav_vector() 10 0.182 0.1872 0.1932 5.45% Amr::init() 1 0.1925 0.1926 0.1927 5.44% Castro::construct_new_gravity() 10 0.1869 0.1896 0.1917 5.41% FillPatchIterator::Initialize 41 0.1479 0.1633 0.1785 5.04% Amr::initialInit() 1 0.1773 0.1779 0.1781 5.03% Castro::initialize_do_advance() 10 0.1529 0.1624 0.1701 4.80% Amr::InitializeInit() 1 0.06742 0.1119 0.1516 4.28% Amr::defBaseLevel() 1 0.06742 0.1119 0.1516 4.28% FillPatchIterator::FillFromLevel0() 41 0.1082 0.1212 0.1439 4.06% FillPatchSingleLevel 41 0.1081 0.1211 0.1438 4.06% Castro::initData() 1 0.05141 0.09428 0.1331 3.76% Castro::clean_state() 62 0.1068 0.114 0.1269 3.58% Castro::estTimeStep() 21 0.03043 0.07476 0.1235 3.48% Castro::expand_state() 10 0.09971 0.1108 0.1196 3.38% FabArray::ParallelCopy() 41 0.07809 0.08985 0.1152 3.25% Amr::FinalizeInit() 1 0.02638 0.06607 0.1106 3.12% check_for_negative_density() 10 0.01764 0.08053 0.1087 3.07% Castro::do_old_sources() 10 0.08627 0.08932 0.09192 2.59% Castro::computeInitialDt() 2 0.002217 0.042 0.08649 2.44% amrex::Copy() 193 0.06162 0.07335 0.0816 2.30% FabArray::ParallelCopy_finish() 41 0.03992 0.05171 0.08159 2.30% FabArray::setVal() 143 0.06275 0.06874 0.08063 2.28% Castro::initialize_advance() 10 0.06262 0.06986 0.07978 2.25% Castro::do_new_sources() 10 0.05688 0.06397 0.0714 2.01% Castro::computeTemp() 63 0.06088 0.06554 0.06897 1.95% Castro::normalize_species() 62 0.04109 0.04326 0.05369 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04338 0.04644 0.04885 1.38% Castro::reset_internal_energy(Fab) 1008 0.04311 0.04614 0.04856 1.37% FabArray::ParallelCopy_nowait() 41 0.03356 0.03807 0.03975 1.12% Castro::construct_new_source() 50 0.0275 0.03008 0.03397 0.96% StateDataPhysBCFunct::() 41 0.02845 0.03119 0.03328 0.94% StateData::FillBoundary(geom) 41 0.02834 0.03108 0.03317 0.94% Gravity::interpolate_monopole_grav() 21 0.02843 0.02958 0.03038 0.86% Castro::finalize_do_advance() 10 0.01336 0.02116 0.029 0.82% Castro::construct_new_gravity_source() 10 0.02184 0.02417 0.02774 0.78% Castro::post_init() 1 0.0232 0.02363 0.0238 0.67% Amr::writePlotFile() 2 0.02245 0.02256 0.02297 0.65% Castro::post_timestep() 10 0.0146 0.01557 0.01844 0.52% VisMF::Write(FabArray) 2 0.008951 0.009759 0.01338 0.38% FabArray::setDomainBndry() 41 0.008347 0.01079 0.01312 0.37% Castro::apply_source_to_state() 20 0.01053 0.01175 0.0127 0.36% FabArray::Saxpy() 20 0.01049 0.01171 0.01265 0.36% Castro::computeNewDt() 9 0.01259 0.01259 0.01262 0.36% Castro::Castro() 1 0.01002 0.01116 0.0118 0.33% Castro::check_for_nan() 20 0.009294 0.01015 0.01117 0.32% MultiFab::contains_nan() 20 0.009275 0.01013 0.01115 0.31% Castro::construct_old_source() 50 0.006755 0.008794 0.009346 0.26% Castro::construct_old_gravity_source() 10 0.006696 0.008721 0.009266 0.26% Castro::initMFs() 1 0.00664 0.007351 0.007729 0.22% Other 261 0.02475 0.03 0.03339 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-3-g0a691f6f4804) finalized