Initializing AMReX (24.06-3-g0a691f6f4804)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-3-g0a691f6f4804) initialized Starting run at 05:21:22 UTC on 2024-06-05. Successfully read inputs file ... Castro git describe: 24.06-3-g3e61f157a AMReX git describe: 24.06-3-g0a691f6f4 Microphysics git describe: 24.06-3-g70f231a5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016007401 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356800952 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355390609 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327646841 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.361733877 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35513182 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.312828712 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312160228 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311888475 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312138198 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314257894 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008606522 seconds Ending run at 05:21:25 UTC on 2024-06-05. Run time = 3.536199072 Run time without initialization = 3.333193505 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.536 ... 3.536 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3315 2.3779 2.4278 68.66% Gravity::make_radial_gravity() 21 0.3018 0.3079 0.3154 8.92% Castro::initData() 1 0.05146 0.09127 0.1346 3.81% check_for_negative_density() 10 0.03025 0.08314 0.1333 3.77% Castro::estTimeStep() 21 0.0238 0.07414 0.1161 3.28% amrex::Copy() 193 0.06226 0.07495 0.08132 2.30% FabArray::ParallelCopy_finish() 41 0.05075 0.05764 0.07944 2.25% FabArray::setVal() 143 0.06272 0.06813 0.07527 2.13% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04664 0.04869 1.38% Castro::normalize_species() 62 0.04119 0.04178 0.04311 1.22% FabArray::ParallelCopy_nowait() 41 0.03403 0.03875 0.04134 1.17% FillPatchIterator::Initialize 41 0.02826 0.03125 0.0333 0.94% StateData::FillBoundary(geom) 41 0.02957 0.03136 0.03317 0.94% Gravity::interpolate_monopole_grav() 21 0.0277 0.02906 0.03014 0.85% Castro::construct_new_gravity_source() 10 0.02221 0.02389 0.02623 0.74% Castro::computeTemp() 63 0.01886 0.01949 0.02025 0.57% Castro::initialize_do_advance() 10 0.01403 0.01669 0.01957 0.55% Amr::writePlotFile() 2 0.009255 0.01239 0.01332 0.38% MultiFab::contains_nan() 20 0.009567 0.01047 0.01303 0.37% VisMF::Write(FabArray) 2 0.008971 0.009745 0.01295 0.37% Castro::initialize_advance() 10 0.005496 0.009904 0.01274 0.36% FabArray::Saxpy() 20 0.01032 0.01174 0.01235 0.35% FabArray::setDomainBndry() 41 0.00868 0.01052 0.0118 0.33% Castro::construct_old_gravity_source() 10 0.006353 0.008752 0.009417 0.27% Castro::initMFs() 1 0.00692 0.007557 0.007858 0.22% Castro::construct_new_source() 50 0.005395 0.005939 0.00615 0.17% Gravity::get_new_grav_vector() 11 0.003091 0.00385 0.005488 0.16% main() 1 0.003287 0.003702 0.003844 0.11% Amr::coarseTimeStep() 10 0.001397 0.002738 0.003598 0.10% Gravity::get_old_grav_vector() 10 0.00161 0.001941 0.002326 0.07% AmrLevel::FillPatch() 41 0.0008567 0.001001 0.001213 0.03% Castro::finalize_do_advance() 10 0.000445 0.000994 0.001102 0.03% Amr::timeStep() 10 0.0001647 0.0002224 0.0004259 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002679 0.0002935 0.000328 0.01% Castro::do_advance_ctu() 10 0.0001568 0.0001736 0.0002018 0.01% Castro::clean_state() 62 0.000146 0.0001619 0.0001978 0.01% StateDataPhysBCFunct::() 41 9.976e-05 0.0001128 0.0001491 0.00% FillPatchIterator::FillFromLevel0() 41 9.875e-05 0.0001082 0.000122 0.00% Castro::Castro() 1 8.204e-05 0.0001071 0.0001176 0.00% Castro::do_old_sources() 10 7.402e-05 8.885e-05 9.866e-05 0.00% FabArray::ParallelCopy() 41 7.553e-05 8.144e-05 9.428e-05 0.00% Amr::FinalizeInit() 1 3.812e-06 1.692e-05 9.426e-05 0.00% Castro::construct_old_source() 50 6.206e-05 7.121e-05 8.179e-05 0.00% FillPatchSingleLevel 41 6.717e-05 7.36e-05 8.014e-05 0.00% Castro::do_new_sources() 10 5.566e-05 6.083e-05 6.63e-05 0.00% Amr::defBaseLevel() 1 4.914e-05 5.458e-05 6.321e-05 0.00% Castro::advance() 10 3.564e-05 4.581e-05 5.457e-05 0.00% Castro::subcycle_advance_ctu() 10 4.413e-05 4.949e-05 5.416e-05 0.00% Castro::construct_new_gravity() 10 2.969e-05 3.776e-05 5.209e-05 0.00% Castro::apply_source_to_state() 20 3.878e-05 4.38e-05 5.03e-05 0.00% Castro::construct_old_gravity() 10 3.398e-05 3.711e-05 4.22e-05 0.00% Castro::expand_state() 10 2.074e-05 2.461e-05 2.912e-05 0.00% Castro::computeNewDt() 9 8.202e-06 1.231e-05 2.807e-05 0.00% Castro::check_for_nan() 20 1.945e-05 2.294e-05 2.587e-05 0.00% Castro::post_timestep() 10 1.391e-05 1.65e-05 1.868e-05 0.00% Castro::computeInitialDt() 2 3.742e-06 1.188e-05 1.471e-05 0.00% Castro::post_init() 1 9.035e-06 9.675e-06 1.12e-05 0.00% Amr::InitializeInit() 1 2.871e-06 3.778e-06 6.786e-06 0.00% Amr::init() 1 1.912e-06 2.341e-06 2.932e-06 0.00% Amr::initialInit() 1 1.478e-06 1.738e-06 1.983e-06 0.00% Other 261 0.01667 0.01899 0.02024 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.536 3.536 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 93.91% Amr::timeStep() 10 3.306 3.307 3.309 93.57% Castro::advance() 10 3.291 3.291 3.292 93.09% Castro::subcycle_advance_ctu() 10 3.215 3.22 3.223 91.14% Castro::do_advance_ctu() 10 3.215 3.22 3.223 91.14% Castro::construct_ctu_hydro_source() 10 2.479 2.482 2.488 70.36% Gravity::make_radial_gravity() 21 0.318 0.323 0.3278 9.27% Gravity::get_new_grav_vector() 11 0.213 0.2153 0.2166 6.13% AmrLevel::FillPatch() 41 0.1926 0.2011 0.2071 5.86% Amr::init() 1 0.2022 0.2024 0.2025 5.73% Castro::construct_old_gravity() 10 0.1877 0.1918 0.1984 5.61% Gravity::get_old_grav_vector() 10 0.1867 0.1911 0.1977 5.59% Castro::construct_new_gravity() 10 0.1871 0.19 0.191 5.40% Amr::initialInit() 1 0.1859 0.1863 0.1869 5.29% FillPatchIterator::Initialize 41 0.1626 0.17 0.1806 5.11% Castro::initialize_do_advance() 10 0.1594 0.1656 0.1712 4.84% Amr::InitializeInit() 1 0.07424 0.1137 0.1573 4.45% Amr::defBaseLevel() 1 0.07424 0.1137 0.1573 4.45% FillPatchIterator::FillFromLevel0() 41 0.1207 0.1282 0.1437 4.06% FillPatchSingleLevel 41 0.1206 0.1281 0.1436 4.06% Castro::initData() 1 0.0551 0.09506 0.1384 3.91% check_for_negative_density() 10 0.03025 0.08314 0.1333 3.77% Castro::expand_state() 10 0.1055 0.1129 0.1196 3.38% Castro::clean_state() 62 0.1104 0.1134 0.1176 3.33% Castro::estTimeStep() 21 0.0238 0.07414 0.1161 3.28% FabArray::ParallelCopy() 41 0.08927 0.09656 0.1137 3.21% Amr::FinalizeInit() 1 0.02867 0.07256 0.112 3.17% Castro::do_old_sources() 10 0.08912 0.09267 0.09497 2.69% Castro::computeInitialDt() 2 0.002772 0.04631 0.08577 2.43% amrex::Copy() 193 0.06226 0.07495 0.08132 2.30% FabArray::ParallelCopy_finish() 41 0.05075 0.05764 0.07944 2.25% FabArray::setVal() 143 0.06272 0.06813 0.07527 2.13% Castro::initialize_advance() 10 0.06509 0.0684 0.07303 2.07% Castro::do_new_sources() 10 0.05838 0.06311 0.07016 1.98% Castro::computeTemp() 63 0.06415 0.06643 0.06927 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04523 0.04693 0.04902 1.39% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04664 0.04869 1.38% Castro::normalize_species() 62 0.04119 0.04178 0.04311 1.22% FabArray::ParallelCopy_nowait() 41 0.03414 0.03884 0.04142 1.17% StateDataPhysBCFunct::() 41 0.02972 0.03147 0.03327 0.94% StateData::FillBoundary(geom) 41 0.02957 0.03136 0.03317 0.94% Castro::construct_new_source() 50 0.02817 0.02983 0.03238 0.92% Gravity::interpolate_monopole_grav() 21 0.0277 0.02906 0.03014 0.85% Castro::post_init() 1 0.02609 0.02637 0.02706 0.77% Castro::construct_new_gravity_source() 10 0.02221 0.02389 0.02623 0.74% Amr::writePlotFile() 2 0.02422 0.02483 0.02517 0.71% Castro::finalize_do_advance() 10 0.0123 0.01973 0.02474 0.70% Castro::post_timestep() 10 0.015 0.01565 0.01659 0.47% Castro::check_for_nan() 20 0.009586 0.0105 0.01305 0.37% MultiFab::contains_nan() 20 0.009567 0.01047 0.01303 0.37% VisMF::Write(FabArray) 2 0.008971 0.009745 0.01295 0.37% Castro::Castro() 1 0.009896 0.01207 0.01277 0.36% Castro::apply_source_to_state() 20 0.01036 0.01178 0.01239 0.35% FabArray::Saxpy() 20 0.01032 0.01174 0.01235 0.35% FabArray::setDomainBndry() 41 0.00868 0.01052 0.0118 0.33% Castro::construct_old_source() 50 0.006415 0.008823 0.009492 0.27% Castro::construct_old_gravity_source() 10 0.006353 0.008752 0.009417 0.27% Castro::computeNewDt() 9 0.009091 0.009126 0.009142 0.26% Castro::initMFs() 1 0.00692 0.007557 0.007858 0.22% Other 261 0.02691 0.03038 0.03271 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 40 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-3-g0a691f6f4804) finalized