Initializing AMReX (24.06-3-g0a691f6f4804)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-3-g0a691f6f4804) initialized Starting run at 05:38:07 UTC on 2024-06-06. Successfully read inputs file ... Castro git describe: 24.06-6-gabb455088 AMReX git describe: 24.06-3-g0a691f6f4 Microphysics git describe: 24.06-5-g094a26da reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014839296 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36920921 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35757715 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338713196 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.372434363 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363294572 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31484835 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314843763 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314909818 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315500805 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31558165 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00792427 seconds Ending run at 05:38:11 UTC on 2024-06-06. Run time = 3.573750891 Run time without initialization = 3.389752374 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.573 ... 3.574 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3781 2.4022 2.4391 68.25% Gravity::make_radial_gravity() 21 0.3027 0.308 0.3168 8.86% Castro::initData() 1 0.04736 0.08813 0.12 3.36% Castro::estTimeStep() 21 0.03809 0.06845 0.1136 3.18% amrex::Copy() 193 0.07908 0.08256 0.08992 2.52% check_for_negative_density() 10 0.02513 0.06547 0.08874 2.48% FabArray::setVal() 143 0.06613 0.07472 0.08648 2.42% FabArray::ParallelCopy_finish() 41 0.04164 0.06328 0.07449 2.08% Castro::reset_internal_energy(Fab) 1008 0.04384 0.04663 0.05039 1.41% Castro::normalize_species() 62 0.04135 0.04283 0.04417 1.24% FabArray::ParallelCopy_nowait() 41 0.039 0.04096 0.04234 1.18% FillPatchIterator::Initialize 41 0.03032 0.03478 0.03844 1.08% StateData::FillBoundary(geom) 41 0.02958 0.03283 0.03507 0.98% Gravity::interpolate_monopole_grav() 21 0.02898 0.02973 0.0319 0.89% Castro::construct_new_gravity_source() 10 0.02416 0.02542 0.0286 0.80% Castro::initialize_do_advance() 10 0.0176 0.01897 0.02243 0.63% Castro::computeTemp() 63 0.01843 0.01942 0.02041 0.57% FabArray::setDomainBndry() 41 0.008824 0.01197 0.01441 0.40% FabArray::Saxpy() 20 0.01164 0.01284 0.01415 0.40% Castro::initialize_advance() 10 0.009601 0.01132 0.01323 0.37% VisMF::Write(FabArray) 2 0.009289 0.009834 0.01239 0.35% MultiFab::contains_nan() 20 0.009984 0.0109 0.01187 0.33% Amr::writePlotFile() 2 0.007733 0.0102 0.01076 0.30% Castro::construct_old_gravity_source() 10 0.008665 0.009421 0.009941 0.28% Amr::coarseTimeStep() 10 0.0008488 0.006234 0.008109 0.23% Castro::initMFs() 1 0.006816 0.007369 0.008068 0.23% Castro::construct_new_source() 50 0.005919 0.006077 0.006283 0.18% main() 1 0.003594 0.003985 0.00428 0.12% Gravity::get_new_grav_vector() 11 0.003186 0.003583 0.003963 0.11% Gravity::get_old_grav_vector() 10 0.00152 0.002074 0.002488 0.07% Castro::finalize_do_advance() 10 0.001172 0.001243 0.001321 0.04% AmrLevel::FillPatch() 41 0.000865 0.000939 0.001022 0.03% Amr::timeStep() 10 0.0001619 0.0002114 0.0003717 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0002948 0.0003185 0.01% Castro::do_advance_ctu() 10 0.0001381 0.0001644 0.0001879 0.01% Castro::clean_state() 62 0.0001498 0.000164 0.0001842 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001085 0.0001166 0.0001271 0.00% Castro::do_old_sources() 10 8.042e-05 9.623e-05 0.0001176 0.00% StateDataPhysBCFunct::() 41 9.438e-05 0.0001018 0.0001133 0.00% Amr::FinalizeInit() 1 4.747e-06 1.837e-05 0.0001123 0.00% Castro::Castro() 1 7.855e-05 8.84e-05 9.992e-05 0.00% Castro::construct_old_source() 50 6.006e-05 7.334e-05 9.092e-05 0.00% FabArray::ParallelCopy() 41 7.912e-05 8.457e-05 8.944e-05 0.00% FillPatchSingleLevel 41 7.401e-05 7.838e-05 8.319e-05 0.00% Castro::do_new_sources() 10 5.303e-05 6.086e-05 6.91e-05 0.00% Castro::subcycle_advance_ctu() 10 5.1e-05 5.476e-05 6.017e-05 0.00% Castro::advance() 10 4.187e-05 4.834e-05 5.577e-05 0.00% Castro::apply_source_to_state() 20 3.799e-05 4.523e-05 5.331e-05 0.00% Castro::computeNewDt() 9 7.332e-06 1.403e-05 5.031e-05 0.00% Amr::defBaseLevel() 1 3.648e-05 4.224e-05 4.975e-05 0.00% Castro::construct_old_gravity() 10 3.498e-05 3.751e-05 4.192e-05 0.00% Castro::construct_new_gravity() 10 2.915e-05 3.378e-05 4.128e-05 0.00% Castro::expand_state() 10 2.304e-05 2.546e-05 3.054e-05 0.00% Castro::check_for_nan() 20 2.068e-05 2.182e-05 2.308e-05 0.00% Castro::post_timestep() 10 1.787e-05 1.947e-05 2.253e-05 0.00% Castro::post_init() 1 8.813e-06 1.136e-05 1.584e-05 0.00% Amr::InitializeInit() 1 2.654e-06 3.656e-06 6.484e-06 0.00% Castro::computeInitialDt() 2 3.438e-06 3.868e-06 4.552e-06 0.00% Amr::init() 1 2.253e-06 2.706e-06 3.549e-06 0.00% Amr::initialInit() 1 1.371e-06 1.912e-06 2.918e-06 0.00% Other 261 0.01677 0.01923 0.02059 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.573 3.574 3.574 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 94.51% Amr::timeStep() 10 3.356 3.357 3.362 94.08% Castro::advance() 10 3.34 3.341 3.343 93.54% Castro::subcycle_advance_ctu() 10 3.251 3.262 3.269 91.46% Castro::do_advance_ctu() 10 3.251 3.262 3.269 91.46% Castro::construct_ctu_hydro_source() 10 2.486 2.489 2.491 69.70% Gravity::make_radial_gravity() 21 0.3204 0.3258 0.3333 9.33% AmrLevel::FillPatch() 41 0.2013 0.2177 0.2337 6.54% Gravity::get_new_grav_vector() 11 0.2257 0.2271 0.2288 6.40% Castro::construct_new_gravity() 10 0.2026 0.2035 0.2048 5.73% FillPatchIterator::Initialize 41 0.1658 0.1843 0.1988 5.56% Castro::construct_old_gravity() 10 0.1871 0.1899 0.1961 5.49% Gravity::get_old_grav_vector() 10 0.1863 0.189 0.195 5.46% Castro::initialize_do_advance() 10 0.1686 0.1779 0.1874 5.24% Amr::init() 1 0.1833 0.1834 0.1835 5.13% Amr::initialInit() 1 0.1682 0.1684 0.1686 4.72% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1375 0.1506 4.21% FillPatchSingleLevel 41 0.1155 0.1374 0.1504 4.21% Amr::InitializeInit() 1 0.06884 0.1099 0.141 3.95% Amr::defBaseLevel() 1 0.06884 0.1099 0.141 3.95% Castro::expand_state() 10 0.1106 0.1227 0.1349 3.77% Castro::initData() 1 0.05106 0.09201 0.1242 3.47% Castro::clean_state() 62 0.109 0.1144 0.1205 3.37% FabArray::ParallelCopy() 41 0.08314 0.1044 0.1164 3.26% Castro::estTimeStep() 21 0.03809 0.06845 0.1136 3.18% Castro::do_old_sources() 10 0.09316 0.09636 0.1002 2.80% Amr::FinalizeInit() 1 0.02735 0.05854 0.09962 2.79% amrex::Copy() 193 0.07908 0.08256 0.08992 2.52% check_for_negative_density() 10 0.02513 0.06547 0.08874 2.48% FabArray::setVal() 143 0.06613 0.07472 0.08648 2.42% Castro::initialize_advance() 10 0.06864 0.07536 0.08579 2.40% Castro::do_new_sources() 10 0.06251 0.06663 0.07584 2.12% Castro::computeInitialDt() 2 0.002291 0.03351 0.07459 2.09% FabArray::ParallelCopy_finish() 41 0.04164 0.06328 0.07449 2.08% Castro::computeTemp() 63 0.06267 0.06635 0.07088 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04412 0.04693 0.0507 1.42% Castro::reset_internal_energy(Fab) 1008 0.04384 0.04663 0.05039 1.41% Castro::normalize_species() 62 0.04135 0.04283 0.04417 1.24% FabArray::ParallelCopy_nowait() 41 0.03909 0.04106 0.04242 1.19% StateDataPhysBCFunct::() 41 0.02969 0.03293 0.03518 0.98% StateData::FillBoundary(geom) 41 0.02958 0.03283 0.03507 0.98% Castro::construct_new_source() 50 0.03012 0.03149 0.03482 0.97% Gravity::interpolate_monopole_grav() 21 0.02898 0.02973 0.0319 0.89% Castro::construct_new_gravity_source() 10 0.02416 0.02542 0.0286 0.80% Castro::finalize_do_advance() 10 0.01271 0.02318 0.02765 0.77% Castro::post_init() 1 0.0243 0.0246 0.02474 0.69% Amr::writePlotFile() 2 0.02291 0.02298 0.02307 0.65% Castro::post_timestep() 10 0.01484 0.01587 0.01916 0.54% FabArray::setDomainBndry() 41 0.008824 0.01197 0.01441 0.40% Castro::apply_source_to_state() 20 0.01169 0.01288 0.01421 0.40% FabArray::Saxpy() 20 0.01164 0.01284 0.01415 0.40% Castro::computeNewDt() 9 0.01184 0.01303 0.01347 0.38% Castro::Castro() 1 0.01046 0.01144 0.0124 0.35% VisMF::Write(FabArray) 2 0.009289 0.009834 0.01239 0.35% Castro::check_for_nan() 20 0.01001 0.01092 0.01189 0.33% MultiFab::contains_nan() 20 0.009984 0.0109 0.01187 0.33% Castro::construct_old_source() 50 0.008725 0.009494 0.01003 0.28% Castro::construct_old_gravity_source() 10 0.008665 0.009421 0.009941 0.28% Castro::initMFs() 1 0.006816 0.007369 0.008068 0.23% Other 261 0.02723 0.03106 0.03459 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 42 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-3-g0a691f6f4804) finalized