Initializing AMReX (24.06-3-g0a691f6f4804)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-3-g0a691f6f4804) initialized Starting run at 05:22:35 UTC on 2024-06-07. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-3-g0a691f6f4 Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01523656 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36120926 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.373187001 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333162702 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.355606707 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358725675 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313761982 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315815558 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31586618 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314677857 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316933303 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007568199 seconds Ending run at 05:22:38 UTC on 2024-06-07. Run time = 3.559704695 Run time without initialization = 3.371624841 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.559 ... 3.559 ... 3.56 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3547 2.3960 2.4643 69.23% Gravity::make_radial_gravity() 21 0.3036 0.3089 0.3145 8.84% check_for_negative_density() 10 0.01862 0.09072 0.1351 3.79% Castro::initData() 1 0.0487 0.08715 0.1196 3.36% Castro::estTimeStep() 21 0.02399 0.0653 0.1072 3.01% FabArray::ParallelCopy_finish() 41 0.0402 0.05905 0.09847 2.77% amrex::Copy() 193 0.06364 0.0747 0.08301 2.33% FabArray::setVal() 143 0.05636 0.06916 0.08008 2.25% Castro::normalize_species() 62 0.04169 0.04587 0.04927 1.38% Castro::reset_internal_energy(Fab) 1008 0.04509 0.04705 0.04883 1.37% FabArray::ParallelCopy_nowait() 41 0.03341 0.03899 0.04069 1.14% FillPatchIterator::Initialize 41 0.02738 0.03231 0.03559 1.00% StateData::FillBoundary(geom) 41 0.02934 0.03182 0.03473 0.98% Gravity::interpolate_monopole_grav() 21 0.02822 0.02989 0.03115 0.87% Castro::construct_new_gravity_source() 10 0.02106 0.02506 0.02829 0.79% Castro::computeTemp() 63 0.01914 0.01973 0.02066 0.58% Castro::initialize_do_advance() 10 0.01176 0.01699 0.02001 0.56% FabArray::Saxpy() 20 0.009705 0.01217 0.01344 0.38% MultiFab::contains_nan() 20 0.01001 0.01096 0.01302 0.37% VisMF::Write(FabArray) 2 0.009062 0.009769 0.01262 0.35% Castro::initialize_advance() 10 0.005405 0.00991 0.01241 0.35% Amr::writePlotFile() 2 0.007634 0.0106 0.01225 0.34% FabArray::setDomainBndry() 41 0.008323 0.0109 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.006164 0.008645 0.009232 0.26% Castro::initMFs() 1 0.006647 0.007385 0.00835 0.23% Castro::construct_new_source() 50 0.005461 0.006008 0.006293 0.18% main() 1 0.003565 0.003949 0.004248 0.12% Gravity::get_new_grav_vector() 11 0.00284 0.003413 0.003828 0.11% Amr::coarseTimeStep() 10 0.001651 0.002585 0.003555 0.10% Gravity::get_old_grav_vector() 10 0.001588 0.001955 0.002262 0.06% Castro::finalize_do_advance() 10 0.000458 0.001018 0.001255 0.04% AmrLevel::FillPatch() 41 0.0006721 0.0007796 0.0009269 0.03% Amr::timeStep() 10 0.0001712 0.0002245 0.0004394 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00028 0.0002935 0.00031 0.01% Castro::clean_state() 62 0.0001465 0.0001634 0.0001926 0.01% Castro::do_advance_ctu() 10 0.0001471 0.0001662 0.0001875 0.01% StateDataPhysBCFunct::() 41 8.876e-05 0.0001071 0.0001509 0.00% FillPatchIterator::FillFromLevel0() 41 9.961e-05 0.000113 0.0001244 0.00% Castro::Castro() 1 8.524e-05 0.0001023 0.0001194 0.00% Castro::do_old_sources() 10 8.223e-05 9.385e-05 0.0001132 0.00% FabArray::ParallelCopy() 41 7.412e-05 8.648e-05 9.545e-05 0.00% FillPatchSingleLevel 41 7.074e-05 7.911e-05 9.109e-05 0.00% Castro::construct_old_source() 50 6.338e-05 7.426e-05 8.663e-05 0.00% Castro::do_new_sources() 10 5.577e-05 6.067e-05 7.436e-05 0.00% Amr::FinalizeInit() 1 3.444e-06 1.255e-05 7.238e-05 0.00% Castro::subcycle_advance_ctu() 10 4.333e-05 5.12e-05 6.287e-05 0.00% Castro::advance() 10 4.106e-05 4.702e-05 6.082e-05 0.00% Castro::apply_source_to_state() 20 3.992e-05 4.359e-05 5.393e-05 0.00% Amr::defBaseLevel() 1 3.757e-05 4.146e-05 5.139e-05 0.00% Castro::construct_new_gravity() 10 2.765e-05 3.356e-05 4.827e-05 0.00% Castro::construct_old_gravity() 10 3.226e-05 3.674e-05 4.055e-05 0.00% Castro::expand_state() 10 2.091e-05 2.551e-05 3.418e-05 0.00% Castro::check_for_nan() 20 1.867e-05 2.152e-05 2.475e-05 0.00% Castro::post_timestep() 10 1.675e-05 1.963e-05 2.303e-05 0.00% Castro::computeNewDt() 9 7.967e-06 8.933e-06 1.071e-05 0.00% Castro::post_init() 1 7.283e-06 8.396e-06 9.885e-06 0.00% Amr::InitializeInit() 1 2.81e-06 3.807e-06 6.814e-06 0.00% Castro::computeInitialDt() 2 3.055e-06 3.668e-06 4.132e-06 0.00% Amr::init() 1 1.783e-06 2.224e-06 2.795e-06 0.00% Amr::initialInit() 1 1.435e-06 1.739e-06 2e-06 0.00% Other 261 0.01705 0.01879 0.02047 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.559 3.559 3.56 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 94.38% Amr::timeStep() 10 3.346 3.347 3.348 94.04% Castro::advance() 10 3.329 3.33 3.331 93.58% Castro::subcycle_advance_ctu() 10 3.248 3.256 3.272 91.90% Castro::do_advance_ctu() 10 3.248 3.256 3.272 91.90% Castro::construct_ctu_hydro_source() 10 2.504 2.508 2.511 70.55% Gravity::make_radial_gravity() 21 0.3192 0.3246 0.3301 9.27% AmrLevel::FillPatch() 41 0.1825 0.2037 0.2245 6.31% Gravity::get_new_grav_vector() 11 0.2202 0.2211 0.2227 6.26% FillPatchIterator::Initialize 41 0.1544 0.1736 0.198 5.56% Castro::construct_new_gravity() 10 0.1948 0.1958 0.1972 5.54% Castro::construct_old_gravity() 10 0.1861 0.1898 0.1952 5.48% Gravity::get_old_grav_vector() 10 0.1853 0.1889 0.1941 5.45% Amr::init() 1 0.1873 0.1875 0.1875 5.27% Castro::initialize_do_advance() 10 0.1552 0.1685 0.1836 5.16% Amr::initialInit() 1 0.1719 0.1722 0.1726 4.85% FillPatchIterator::FillFromLevel0() 41 0.1129 0.1303 0.1623 4.56% FillPatchSingleLevel 41 0.1128 0.1302 0.1622 4.56% Amr::InitializeInit() 1 0.07146 0.1098 0.1428 4.01% Amr::defBaseLevel() 1 0.07145 0.1098 0.1428 4.01% check_for_negative_density() 10 0.01862 0.09072 0.1351 3.79% Castro::expand_state() 10 0.1009 0.1157 0.1341 3.77% FabArray::ParallelCopy() 41 0.08082 0.09822 0.1321 3.71% Castro::initData() 1 0.0531 0.09143 0.1239 3.48% Castro::clean_state() 62 0.1143 0.1181 0.1237 3.48% Castro::estTimeStep() 21 0.02399 0.0653 0.1072 3.01% Amr::FinalizeInit() 1 0.02925 0.06232 0.1009 2.84% FabArray::ParallelCopy_finish() 41 0.0402 0.05905 0.09847 2.77% Castro::do_old_sources() 10 0.08686 0.09111 0.094 2.64% amrex::Copy() 193 0.06364 0.0747 0.08301 2.33% FabArray::setVal() 143 0.05636 0.06916 0.08008 2.25% Castro::initialize_advance() 10 0.05455 0.07028 0.07853 2.21% Castro::do_new_sources() 10 0.05542 0.06638 0.075 2.11% Castro::computeInitialDt() 2 0.002634 0.03558 0.07396 2.08% Castro::computeTemp() 63 0.06451 0.06708 0.06979 1.96% Castro::normalize_species() 62 0.04169 0.04587 0.04927 1.38% Castro::reset_internal_energy(MultiFab) 63 0.04537 0.04734 0.04913 1.38% Castro::reset_internal_energy(Fab) 1008 0.04509 0.04705 0.04883 1.37% FabArray::ParallelCopy_nowait() 41 0.03351 0.03908 0.04077 1.15% StateDataPhysBCFunct::() 41 0.02945 0.03193 0.03483 0.98% StateData::FillBoundary(geom) 41 0.02934 0.03182 0.03473 0.98% Castro::construct_new_source() 50 0.02652 0.03107 0.03436 0.97% Castro::finalize_do_advance() 10 0.01289 0.02156 0.03255 0.91% Gravity::interpolate_monopole_grav() 21 0.02822 0.02989 0.03115 0.87% Castro::construct_new_gravity_source() 10 0.02106 0.02506 0.02829 0.79% Castro::post_init() 1 0.02598 0.0262 0.02662 0.75% Amr::writePlotFile() 2 0.02258 0.02295 0.02312 0.65% Castro::post_timestep() 10 0.01533 0.01638 0.01769 0.50% Castro::apply_source_to_state() 20 0.009745 0.01222 0.01349 0.38% FabArray::Saxpy() 20 0.009705 0.01217 0.01344 0.38% Castro::check_for_nan() 20 0.01003 0.01098 0.01304 0.37% MultiFab::contains_nan() 20 0.01001 0.01096 0.01302 0.37% Castro::Castro() 1 0.0105 0.01201 0.01285 0.36% VisMF::Write(FabArray) 2 0.009062 0.009769 0.01262 0.35% FabArray::setDomainBndry() 41 0.008323 0.0109 0.01173 0.33% Castro::construct_old_source() 50 0.006232 0.008719 0.009319 0.26% Castro::construct_old_gravity_source() 10 0.006164 0.008645 0.009232 0.26% Castro::computeNewDt() 9 0.009176 0.009192 0.009221 0.26% Castro::initMFs() 1 0.006647 0.007385 0.00835 0.23% Other 261 0.02771 0.03049 0.03384 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 43 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-3-g0a691f6f4804) finalized