Initializing AMReX (24.06-8-gf42aa8cdde94)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-8-gf42aa8cdde94) initialized Starting run at 05:38:11 UTC on 2024-06-10. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-8-gf42aa8cdd Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014337733 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354981241 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341559883 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346879175 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332443808 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.390861828 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.322601496 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314023475 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314055635 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316058241 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316425733 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007696651 seconds Ending run at 05:38:15 UTC on 2024-06-10. Run time = 3.544950642 Run time without initialization = 3.362608231 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.545 ... 3.545 ... 3.545 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3494 2.3989 2.4476 69.04% Gravity::make_radial_gravity() 21 0.2894 0.3032 0.3208 9.05% check_for_negative_density() 10 0.03902 0.08729 0.1353 3.82% Castro::initData() 1 0.04742 0.087 0.1196 3.37% Castro::estTimeStep() 21 0.0252 0.06073 0.102 2.88% FabArray::ParallelCopy_finish() 41 0.04785 0.05843 0.09109 2.57% amrex::Copy() 193 0.064 0.07928 0.08874 2.50% FabArray::setVal() 143 0.05459 0.06546 0.07258 2.05% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04697 0.05048 1.42% FabArray::ParallelCopy_nowait() 41 0.03753 0.04058 0.04664 1.32% Castro::normalize_species() 62 0.04163 0.04193 0.04311 1.22% StateData::FillBoundary(geom) 41 0.03139 0.03314 0.03523 0.99% FillPatchIterator::Initialize 41 0.02661 0.0315 0.03434 0.97% Gravity::interpolate_monopole_grav() 21 0.02763 0.02902 0.02992 0.84% Castro::construct_new_gravity_source() 10 0.0226 0.0237 0.02575 0.73% Castro::computeTemp() 63 0.01881 0.01941 0.01988 0.56% Castro::initialize_do_advance() 10 0.01133 0.01563 0.01693 0.48% FabArray::setDomainBndry() 41 0.009513 0.01231 0.01417 0.40% Castro::initialize_advance() 10 0.005316 0.01059 0.01334 0.38% MultiFab::contains_nan() 20 0.009803 0.01072 0.01301 0.37% FabArray::Saxpy() 20 0.01032 0.01199 0.01296 0.37% VisMF::Write(FabArray) 2 0.008937 0.009739 0.01224 0.35% Amr::writePlotFile() 2 0.007381 0.01004 0.01208 0.34% Castro::construct_old_gravity_source() 10 0.006302 0.008692 0.009453 0.27% Castro::initMFs() 1 0.006603 0.007194 0.007681 0.22% Castro::construct_new_source() 50 0.005715 0.006195 0.006438 0.18% main() 1 0.003927 0.004099 0.004367 0.12% Gravity::get_new_grav_vector() 11 0.002682 0.00336 0.003702 0.10% Gravity::get_old_grav_vector() 10 0.001638 0.001968 0.002553 0.07% Amr::coarseTimeStep() 10 0.0008076 0.001788 0.00226 0.06% Castro::finalize_do_advance() 10 0.0004449 0.001022 0.001413 0.04% AmrLevel::FillPatch() 41 0.0007737 0.0008597 0.0009607 0.03% Amr::timeStep() 10 0.0001732 0.0002147 0.0003952 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002783 0.000306 0.0003541 0.01% Castro::do_advance_ctu() 10 0.0001441 0.0001662 0.0001865 0.01% Castro::clean_state() 62 0.0001421 0.0001612 0.0001812 0.01% StateDataPhysBCFunct::() 41 8.941e-05 0.0001196 0.0001628 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001054 0.0001236 0.0001584 0.00% Castro::Castro() 1 8.347e-05 0.0001029 0.0001219 0.00% FabArray::ParallelCopy() 41 6.551e-05 8.764e-05 0.0001086 0.00% Castro::do_old_sources() 10 7.711e-05 9.025e-05 0.0001069 0.00% Castro::construct_old_source() 50 5.379e-05 7.666e-05 9.73e-05 0.00% Amr::FinalizeInit() 1 3.177e-06 1.554e-05 9.538e-05 0.00% FillPatchSingleLevel 41 7.162e-05 7.726e-05 8.425e-05 0.00% Castro::do_new_sources() 10 5.593e-05 6.481e-05 7.426e-05 0.00% Castro::subcycle_advance_ctu() 10 4.496e-05 5.022e-05 5.786e-05 0.00% Castro::advance() 10 3.835e-05 4.626e-05 5.572e-05 0.00% Castro::apply_source_to_state() 20 3.545e-05 4.412e-05 4.949e-05 0.00% Amr::defBaseLevel() 1 3.664e-05 4.211e-05 4.757e-05 0.00% Castro::construct_old_gravity() 10 3.472e-05 3.882e-05 4.381e-05 0.00% Castro::construct_new_gravity() 10 2.878e-05 3.387e-05 3.964e-05 0.00% Castro::expand_state() 10 1.938e-05 2.396e-05 3.218e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.737e-05 3.217e-05 0.00% Castro::post_timestep() 10 1.519e-05 1.65e-05 1.8e-05 0.00% Castro::post_init() 1 9.569e-06 1.128e-05 1.389e-05 0.00% Castro::computeNewDt() 9 8.253e-06 9.737e-06 1.276e-05 0.00% Amr::InitializeInit() 1 2.915e-06 3.687e-06 7.336e-06 0.00% Castro::computeInitialDt() 2 3.203e-06 3.575e-06 4.119e-06 0.00% Amr::init() 1 1.869e-06 2.331e-06 3.434e-06 0.00% Amr::initialInit() 1 1.349e-06 1.782e-06 2.073e-06 0.00% Other 261 0.0176 0.02004 0.02146 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.545 3.545 3.545 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 94.52% Amr::timeStep() 10 3.338 3.339 3.34 94.20% Castro::advance() 10 3.322 3.323 3.323 93.74% Castro::subcycle_advance_ctu() 10 3.247 3.252 3.264 92.08% Castro::do_advance_ctu() 10 3.246 3.252 3.264 92.08% Castro::construct_ctu_hydro_source() 10 2.498 2.506 2.51 70.80% Gravity::make_radial_gravity() 21 0.3057 0.3191 0.3334 9.40% AmrLevel::FillPatch() 41 0.2024 0.2101 0.2274 6.41% Castro::construct_old_gravity() 10 0.1848 0.1967 0.2098 5.92% Gravity::get_old_grav_vector() 10 0.1838 0.1959 0.2092 5.90% Gravity::get_new_grav_vector() 11 0.2056 0.2064 0.2078 5.86% FillPatchIterator::Initialize 41 0.1697 0.1765 0.2016 5.69% Castro::construct_new_gravity() 10 0.1833 0.184 0.1851 5.22% Amr::init() 1 0.1816 0.1817 0.1818 5.13% Castro::initialize_do_advance() 10 0.1635 0.1707 0.1777 5.01% Amr::initialInit() 1 0.1667 0.1672 0.1673 4.72% FillPatchIterator::FillFromLevel0() 41 0.1233 0.1327 0.1614 4.55% FillPatchSingleLevel 41 0.1232 0.1325 0.1612 4.55% Amr::InitializeInit() 1 0.0693 0.1086 0.141 3.98% Amr::defBaseLevel() 1 0.0693 0.1086 0.141 3.98% check_for_negative_density() 10 0.03902 0.08729 0.1353 3.82% FabArray::ParallelCopy() 41 0.08899 0.09919 0.1288 3.63% Castro::expand_state() 10 0.1091 0.1176 0.1244 3.51% Castro::initData() 1 0.05138 0.09075 0.123 3.47% Castro::clean_state() 62 0.1129 0.1153 0.1188 3.35% Castro::do_old_sources() 10 0.09521 0.09809 0.1046 2.95% Castro::estTimeStep() 21 0.0252 0.06073 0.102 2.88% Amr::FinalizeInit() 1 0.02611 0.05858 0.09797 2.76% FabArray::ParallelCopy_finish() 41 0.04785 0.05843 0.09109 2.57% amrex::Copy() 193 0.064 0.07928 0.08874 2.50% Castro::computeInitialDt() 2 0.002265 0.0347 0.074 2.09% Castro::initialize_advance() 10 0.05458 0.06755 0.07277 2.05% FabArray::setVal() 143 0.05459 0.06546 0.07258 2.05% Castro::computeTemp() 63 0.06468 0.06669 0.07071 1.99% Castro::do_new_sources() 10 0.05751 0.06215 0.06723 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04565 0.04727 0.05083 1.43% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04697 0.05048 1.42% FabArray::ParallelCopy_nowait() 41 0.03763 0.04067 0.04674 1.32% Castro::normalize_species() 62 0.04163 0.04193 0.04311 1.22% StateDataPhysBCFunct::() 41 0.03152 0.03326 0.03534 1.00% StateData::FillBoundary(geom) 41 0.03139 0.03314 0.03523 0.99% Castro::construct_new_source() 50 0.02831 0.02989 0.03219 0.91% Gravity::interpolate_monopole_grav() 21 0.02763 0.02902 0.02992 0.84% Castro::construct_new_gravity_source() 10 0.0226 0.0237 0.02575 0.73% Castro::post_init() 1 0.02326 0.02346 0.02358 0.67% Amr::writePlotFile() 2 0.02223 0.02236 0.0228 0.64% Castro::finalize_do_advance() 10 0.01246 0.01792 0.02164 0.61% Castro::post_timestep() 10 0.01553 0.01576 0.01632 0.46% FabArray::setDomainBndry() 41 0.009513 0.01231 0.01417 0.40% Castro::check_for_nan() 20 0.009825 0.01075 0.01304 0.37% Castro::apply_source_to_state() 20 0.01036 0.01203 0.01301 0.37% MultiFab::contains_nan() 20 0.009803 0.01072 0.01301 0.37% FabArray::Saxpy() 20 0.01032 0.01199 0.01296 0.37% Castro::Castro() 1 0.009515 0.01152 0.01241 0.35% VisMF::Write(FabArray) 2 0.008937 0.009739 0.01224 0.35% Castro::construct_old_source() 50 0.006355 0.008768 0.009535 0.27% Castro::construct_old_gravity_source() 10 0.006302 0.008692 0.009453 0.27% Castro::computeNewDt() 9 0.009127 0.009146 0.009164 0.26% Castro::initMFs() 1 0.006603 0.007194 0.007681 0.22% Other 261 0.02742 0.03103 0.03302 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-8-gf42aa8cdde94) finalized