Initializing AMReX (24.06-10-g5caba6e31085)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-10-g5caba6e31085) initialized Starting run at 05:20:46 UTC on 2024-06-11. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-10-g5caba6e31 Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01563455 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362019104 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360072444 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333008332 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.348226107 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367617018 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315743911 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316430024 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316294161 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315576891 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31748423 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007913065 seconds Ending run at 05:20:50 UTC on 2024-06-11. Run time = 3.55823371 Run time without initialization = 3.36519819 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.558 ... 3.558 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3449 2.3852 2.4410 68.60% Gravity::make_radial_gravity() 21 0.2983 0.3061 0.3131 8.80% check_for_negative_density() 10 0.02825 0.08857 0.1313 3.69% Castro::initData() 1 0.04927 0.09275 0.1239 3.48% Castro::estTimeStep() 21 0.03002 0.06463 0.1094 3.07% FabArray::ParallelCopy_finish() 41 0.03919 0.06169 0.1017 2.86% amrex::Copy() 193 0.06366 0.07598 0.08559 2.41% FabArray::setVal() 143 0.05788 0.06946 0.08085 2.27% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04721 0.05188 1.46% Castro::normalize_species() 62 0.04242 0.04371 0.04512 1.27% FabArray::ParallelCopy_nowait() 41 0.03437 0.03913 0.04048 1.14% FillPatchIterator::Initialize 41 0.02694 0.03288 0.03722 1.05% StateData::FillBoundary(geom) 41 0.03153 0.03302 0.03559 1.00% Gravity::interpolate_monopole_grav() 21 0.02705 0.02898 0.02987 0.84% Castro::construct_new_gravity_source() 10 0.0212 0.02358 0.02511 0.71% Castro::initialize_do_advance() 10 0.01158 0.01819 0.02239 0.63% Castro::computeTemp() 63 0.01823 0.01956 0.0207 0.58% FabArray::Saxpy() 20 0.01005 0.0131 0.01785 0.50% Amr::writePlotFile() 2 0.007929 0.01136 0.01365 0.38% VisMF::Write(FabArray) 2 0.009069 0.009991 0.01322 0.37% Castro::initialize_advance() 10 0.005417 0.009992 0.01273 0.36% MultiFab::contains_nan() 20 0.008963 0.01027 0.01209 0.34% FabArray::setDomainBndry() 41 0.008721 0.01072 0.01167 0.33% Castro::enforce_min_density() 62 0.007222 0.008026 0.01109 0.31% Castro::construct_old_gravity_source() 10 0.006269 0.008779 0.009475 0.27% Amr::coarseTimeStep() 10 0.00225 0.005854 0.007883 0.22% Castro::initMFs() 1 0.006975 0.007499 0.007674 0.22% Castro::construct_new_source() 50 0.005624 0.006005 0.006386 0.18% main() 1 0.003545 0.003788 0.003948 0.11% Gravity::get_new_grav_vector() 11 0.002768 0.003312 0.003796 0.11% Gravity::get_old_grav_vector() 10 0.001613 0.001937 0.002308 0.06% Castro::finalize_do_advance() 10 0.0003911 0.00105 0.001316 0.04% AmrLevel::FillPatch() 41 0.0006764 0.0008397 0.0009454 0.03% Amr::timeStep() 10 0.0001716 0.000224 0.0004399 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002816 0.0003109 0.0004073 0.01% Castro::clean_state() 62 0.0001453 0.0001713 0.0002084 0.01% Castro::do_advance_ctu() 10 0.0001529 0.0001765 0.000204 0.01% Castro::Castro() 1 9.393e-05 0.0001115 0.0001359 0.00% FillPatchIterator::FillFromLevel0() 41 9.67e-05 0.0001098 0.0001306 0.00% StateDataPhysBCFunct::() 41 8.984e-05 9.993e-05 0.0001292 0.00% Castro::do_old_sources() 10 7.774e-05 9.027e-05 0.0001016 0.00% FabArray::ParallelCopy() 41 7.334e-05 7.923e-05 9.046e-05 0.00% FillPatchSingleLevel 41 7.087e-05 7.605e-05 8.782e-05 0.00% Amr::FinalizeInit() 1 4.148e-06 1.75e-05 8.761e-05 0.00% Castro::construct_old_source() 50 6.268e-05 7.328e-05 8.61e-05 0.00% Castro::do_new_sources() 10 5.38e-05 6.415e-05 7.903e-05 0.00% Castro::apply_source_to_state() 20 3.852e-05 4.876e-05 6.73e-05 0.00% Castro::subcycle_advance_ctu() 10 4.848e-05 5.266e-05 5.848e-05 0.00% Castro::advance() 10 4.396e-05 4.899e-05 5.374e-05 0.00% Amr::defBaseLevel() 1 4.178e-05 4.743e-05 5.31e-05 0.00% Castro::construct_old_gravity() 10 3.144e-05 3.919e-05 4.459e-05 0.00% Castro::construct_new_gravity() 10 2.989e-05 3.61e-05 4.358e-05 0.00% Castro::expand_state() 10 1.784e-05 2.381e-05 2.977e-05 0.00% Castro::check_for_nan() 20 2.197e-05 2.407e-05 2.819e-05 0.00% Castro::post_timestep() 10 1.687e-05 1.933e-05 2.348e-05 0.00% Castro::post_init() 1 8.562e-06 1.076e-05 1.662e-05 0.00% Castro::computeNewDt() 9 8.241e-06 9.231e-06 1.057e-05 0.00% Castro::computeInitialDt() 2 2.913e-06 4.484e-06 7.28e-06 0.00% Amr::InitializeInit() 1 2.967e-06 3.92e-06 6.511e-06 0.00% Amr::init() 1 1.708e-06 2.538e-06 3.381e-06 0.00% Amr::initialInit() 1 1.566e-06 2.058e-06 2.644e-06 0.00% Other 199 0.0114 0.013 0.01459 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.558 3.558 3.558 100.00% Amr::coarseTimeStep() 10 3.353 3.353 3.353 94.24% Amr::timeStep() 10 3.335 3.337 3.34 93.88% Castro::advance() 10 3.319 3.32 3.321 93.34% Castro::subcycle_advance_ctu() 10 3.237 3.247 3.262 91.66% Castro::do_advance_ctu() 10 3.237 3.247 3.262 91.66% Castro::construct_ctu_hydro_source() 10 2.49 2.494 2.496 70.15% Gravity::make_radial_gravity() 21 0.3141 0.3218 0.3289 9.24% AmrLevel::FillPatch() 41 0.1887 0.2085 0.2312 6.50% Gravity::get_new_grav_vector() 11 0.2109 0.2118 0.2123 5.97% FillPatchIterator::Initialize 41 0.1589 0.1779 0.2048 5.76% Castro::construct_old_gravity() 10 0.1892 0.1938 0.1983 5.57% Gravity::get_old_grav_vector() 10 0.1881 0.1929 0.1976 5.55% Amr::init() 1 0.1922 0.1924 0.1924 5.41% Castro::initialize_do_advance() 10 0.1667 0.1756 0.1881 5.29% Castro::construct_new_gravity() 10 0.185 0.1857 0.1863 5.24% Amr::initialInit() 1 0.176 0.1766 0.1769 4.97% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1343 0.1692 4.75% FillPatchSingleLevel 41 0.1151 0.1342 0.1691 4.75% Amr::InitializeInit() 1 0.07235 0.1156 0.1468 4.13% Amr::defBaseLevel() 1 0.07234 0.1156 0.1468 4.13% Castro::expand_state() 10 0.1081 0.1214 0.1395 3.92% FabArray::ParallelCopy() 41 0.07932 0.101 0.1363 3.83% check_for_negative_density() 10 0.02825 0.08857 0.1313 3.69% Castro::initData() 1 0.05327 0.09688 0.1278 3.59% Castro::clean_state() 62 0.1138 0.1181 0.1224 3.44% Castro::estTimeStep() 21 0.03002 0.06463 0.1094 3.07% Amr::FinalizeInit() 1 0.02917 0.06092 0.1044 2.94% FabArray::ParallelCopy_finish() 41 0.03919 0.06169 0.1017 2.86% Castro::do_old_sources() 10 0.0899 0.09369 0.09701 2.73% amrex::Copy() 193 0.06366 0.07598 0.08559 2.41% FabArray::setVal() 143 0.05788 0.06946 0.08085 2.27% Castro::initialize_advance() 10 0.05389 0.06946 0.07913 2.22% Castro::computeInitialDt() 2 0.002341 0.03351 0.07685 2.16% Castro::do_new_sources() 10 0.05636 0.06597 0.07523 2.11% Castro::computeTemp() 63 0.06229 0.06708 0.07254 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04397 0.04752 0.05229 1.47% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04721 0.05188 1.46% Castro::normalize_species() 62 0.04242 0.04371 0.04512 1.27% FabArray::ParallelCopy_nowait() 41 0.03447 0.03922 0.04055 1.14% StateDataPhysBCFunct::() 41 0.03162 0.03312 0.03569 1.00% StateData::FillBoundary(geom) 41 0.03153 0.03302 0.03559 1.00% Castro::finalize_do_advance() 10 0.01284 0.02273 0.0318 0.89% Castro::construct_new_source() 50 0.02682 0.02958 0.03133 0.88% Gravity::interpolate_monopole_grav() 21 0.02705 0.02898 0.02987 0.84% Castro::post_init() 1 0.02677 0.02705 0.02733 0.77% Castro::construct_new_gravity_source() 10 0.0212 0.02358 0.02511 0.71% Amr::writePlotFile() 2 0.02358 0.02387 0.02443 0.69% Castro::post_timestep() 10 0.01542 0.01649 0.01892 0.53% Castro::apply_source_to_state() 20 0.0101 0.01315 0.01791 0.50% FabArray::Saxpy() 20 0.01005 0.0131 0.01785 0.50% VisMF::Write(FabArray) 2 0.009069 0.009991 0.01322 0.37% Castro::Castro() 1 0.01085 0.01228 0.01294 0.36% Castro::check_for_nan() 20 0.008985 0.01029 0.01212 0.34% MultiFab::contains_nan() 20 0.008963 0.01027 0.01209 0.34% FabArray::setDomainBndry() 41 0.008721 0.01072 0.01167 0.33% Castro::enforce_min_density() 62 0.007222 0.008026 0.01109 0.31% Castro::construct_old_source() 50 0.006332 0.008852 0.00955 0.27% Castro::construct_old_gravity_source() 10 0.006269 0.008779 0.009475 0.27% Castro::computeNewDt() 9 0.009437 0.009452 0.009465 0.27% Castro::initMFs() 1 0.006975 0.007499 0.007674 0.22% Other 199 0.02194 0.02504 0.02847 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 39 B 42 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-10-g5caba6e31085) finalized