Initializing AMReX (24.06-12-g5bdac9102517)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-12-g5bdac9102517) initialized Starting run at 05:37:03 UTC on 2024-06-12. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-12-g5bdac9102 Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015559955 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363233058 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352275686 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329793483 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330939853 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.376721432 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.323578411 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313793439 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314742428 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314447292 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31214101 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007773209 seconds Ending run at 05:37:06 UTC on 2024-06-12. Run time = 3.53058204 Run time without initialization = 3.344614775 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.53 ... 3.53 ... 3.531 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3154 2.3903 2.4370 69.02% Gravity::make_radial_gravity() 21 0.2916 0.3021 0.3213 9.10% check_for_negative_density() 10 0.02264 0.07291 0.1492 4.23% Castro::initData() 1 0.05717 0.08722 0.1196 3.39% FabArray::ParallelCopy_finish() 41 0.04269 0.06 0.09665 2.74% Castro::estTimeStep() 21 0.02373 0.06089 0.09277 2.63% amrex::Copy() 193 0.06187 0.07944 0.09236 2.62% FabArray::setVal() 143 0.06014 0.06704 0.07354 2.08% Castro::reset_internal_energy(Fab) 1008 0.04557 0.04805 0.05636 1.60% FabArray::ParallelCopy_nowait() 41 0.03411 0.04354 0.05285 1.50% Castro::normalize_species() 62 0.04075 0.04203 0.04308 1.22% StateData::FillBoundary(geom) 41 0.03067 0.03352 0.03624 1.03% FillPatchIterator::Initialize 41 0.02766 0.03162 0.03399 0.96% Gravity::interpolate_monopole_grav() 21 0.0273 0.02903 0.02973 0.84% Castro::construct_new_gravity_source() 10 0.02211 0.0235 0.02515 0.71% Castro::computeTemp() 63 0.01924 0.01973 0.02058 0.58% Castro::initialize_do_advance() 10 0.01122 0.01584 0.01782 0.50% VisMF::Write(FabArray) 2 0.009265 0.01013 0.01371 0.39% Castro::initialize_advance() 10 0.005201 0.01062 0.01349 0.38% FabArray::setDomainBndry() 41 0.008284 0.01086 0.01314 0.37% FabArray::Saxpy() 20 0.01135 0.01205 0.01283 0.36% Amr::writePlotFile() 2 0.008061 0.01032 0.011 0.31% MultiFab::contains_nan() 20 0.009322 0.01038 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.008921 0.009187 0.009511 0.27% Castro::initMFs() 1 0.006452 0.006896 0.007862 0.22% Castro::construct_new_source() 50 0.005685 0.006209 0.00656 0.19% FillPatchIterator::FillFromLevel0() 41 9.912e-05 0.0008393 0.005924 0.17% main() 1 0.003708 0.004126 0.004576 0.13% Gravity::get_new_grav_vector() 11 0.002731 0.003536 0.004018 0.11% Amr::coarseTimeStep() 10 0.001825 0.002603 0.003234 0.09% Gravity::get_old_grav_vector() 10 0.001442 0.001912 0.002331 0.07% Castro::finalize_do_advance() 10 0.000451 0.001137 0.001573 0.04% AmrLevel::FillPatch() 41 0.0006822 0.0008773 0.001057 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0002901 0.0003071 0.0003829 0.01% Amr::timeStep() 10 0.0001737 0.0002167 0.0003783 0.01% Castro::do_advance_ctu() 10 0.0001422 0.0001739 0.0002243 0.01% Castro::clean_state() 62 0.0001505 0.0001621 0.0001798 0.01% StateDataPhysBCFunct::() 41 8.797e-05 0.0001103 0.0001373 0.00% FillPatchSingleLevel 41 7e-05 8.064e-05 0.0001287 0.00% Castro::Castro() 1 7.489e-05 9.948e-05 0.000126 0.00% Castro::do_old_sources() 10 8.375e-05 9.252e-05 0.0001042 0.00% Amr::FinalizeInit() 1 3.816e-06 1.75e-05 0.0001034 0.00% Castro::construct_old_source() 50 6.961e-05 7.738e-05 0.000102 0.00% FabArray::ParallelCopy() 41 6.898e-05 8.611e-05 0.0001001 0.00% Castro::do_new_sources() 10 5.308e-05 6.786e-05 9.367e-05 0.00% Castro::subcycle_advance_ctu() 10 4.139e-05 4.859e-05 5.935e-05 0.00% Castro::apply_source_to_state() 20 3.595e-05 4.322e-05 5.475e-05 0.00% Castro::advance() 10 3.891e-05 4.491e-05 5.437e-05 0.00% Amr::defBaseLevel() 1 3.43e-05 4.314e-05 5.299e-05 0.00% Castro::construct_old_gravity() 10 3.315e-05 4.002e-05 4.52e-05 0.00% Castro::construct_new_gravity() 10 3.151e-05 3.731e-05 4.276e-05 0.00% Castro::check_for_nan() 20 2.08e-05 2.379e-05 2.753e-05 0.00% Castro::expand_state() 10 2.143e-05 2.312e-05 2.651e-05 0.00% Castro::post_timestep() 10 1.432e-05 1.814e-05 2.105e-05 0.00% Castro::post_init() 1 8.761e-06 1.27e-05 1.778e-05 0.00% Castro::computeNewDt() 9 8.193e-06 9.739e-06 1.111e-05 0.00% Amr::InitializeInit() 1 2.949e-06 3.661e-06 6.362e-06 0.00% Castro::computeInitialDt() 2 3.575e-06 4.401e-06 5.181e-06 0.00% Amr::init() 1 1.617e-06 2.191e-06 2.846e-06 0.00% Amr::initialInit() 1 1.505e-06 1.939e-06 2.313e-06 0.00% Other 261 0.01661 0.01996 0.02183 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.53 3.53 3.531 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 94.38% Amr::timeStep() 10 3.318 3.319 3.319 94.02% Castro::advance() 10 3.302 3.303 3.303 93.55% Castro::subcycle_advance_ctu() 10 3.22 3.23 3.246 91.93% Castro::do_advance_ctu() 10 3.22 3.23 3.246 91.93% Castro::construct_ctu_hydro_source() 10 2.481 2.484 2.486 70.40% Gravity::make_radial_gravity() 21 0.3077 0.318 0.3344 9.47% AmrLevel::FillPatch() 41 0.2037 0.2144 0.2244 6.36% Gravity::get_new_grav_vector() 11 0.2099 0.2109 0.2124 6.01% Castro::construct_old_gravity() 10 0.184 0.1919 0.2062 5.84% Gravity::get_old_grav_vector() 10 0.1829 0.191 0.2056 5.82% FillPatchIterator::Initialize 41 0.1695 0.1807 0.1978 5.60% Castro::construct_new_gravity() 10 0.1847 0.1854 0.1863 5.28% Amr::init() 1 0.1852 0.1854 0.1855 5.25% Castro::initialize_do_advance() 10 0.1639 0.1749 0.1805 5.11% Amr::initialInit() 1 0.1694 0.1703 0.1705 4.83% FillPatchIterator::FillFromLevel0() 41 0.1261 0.1383 0.1619 4.58% FillPatchSingleLevel 41 0.126 0.1374 0.1618 4.58% check_for_negative_density() 10 0.02264 0.07291 0.1492 4.23% Amr::InitializeInit() 1 0.07946 0.1084 0.141 3.99% Amr::defBaseLevel() 1 0.07945 0.1083 0.141 3.99% FabArray::ParallelCopy() 41 0.08959 0.1037 0.1309 3.71% Castro::expand_state() 10 0.1086 0.1224 0.1291 3.66% Castro::clean_state() 62 0.1129 0.1168 0.1269 3.59% Castro::initData() 1 0.06094 0.09117 0.1231 3.49% Castro::do_old_sources() 10 0.09675 0.09949 0.1018 2.88% FabArray::ParallelCopy_finish() 41 0.04269 0.06 0.09665 2.74% Castro::estTimeStep() 21 0.02373 0.06089 0.09277 2.63% amrex::Copy() 193 0.06187 0.07944 0.09236 2.62% Amr::FinalizeInit() 1 0.02929 0.0619 0.09104 2.58% Castro::initialize_advance() 10 0.05287 0.06921 0.0795 2.25% Castro::computeTemp() 63 0.06525 0.06808 0.07732 2.19% FabArray::setVal() 143 0.06014 0.06704 0.07354 2.08% Castro::do_new_sources() 10 0.05712 0.06201 0.06649 1.88% Castro::computeInitialDt() 2 0.002376 0.03505 0.06397 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04586 0.04835 0.05674 1.61% Castro::reset_internal_energy(Fab) 1008 0.04557 0.04805 0.05636 1.60% FabArray::ParallelCopy_nowait() 41 0.0342 0.04362 0.05294 1.50% Castro::normalize_species() 62 0.04075 0.04203 0.04308 1.22% StateDataPhysBCFunct::() 41 0.03076 0.03363 0.03633 1.03% StateData::FillBoundary(geom) 41 0.03067 0.03352 0.03624 1.03% Castro::construct_new_source() 50 0.0278 0.0297 0.03171 0.90% Gravity::interpolate_monopole_grav() 21 0.0273 0.02903 0.02973 0.84% Castro::post_init() 1 0.02579 0.02649 0.02674 0.76% Castro::construct_new_gravity_source() 10 0.02211 0.0235 0.02515 0.71% Amr::writePlotFile() 2 0.02279 0.02302 0.02363 0.67% Castro::finalize_do_advance() 10 0.01274 0.01718 0.02117 0.60% Castro::post_timestep() 10 0.01547 0.01593 0.01644 0.47% VisMF::Write(FabArray) 2 0.009265 0.01013 0.01371 0.39% FabArray::setDomainBndry() 41 0.008284 0.01086 0.01314 0.37% Castro::apply_source_to_state() 20 0.01139 0.0121 0.01288 0.36% FabArray::Saxpy() 20 0.01135 0.01205 0.01283 0.36% Castro::Castro() 1 0.009974 0.01091 0.0119 0.34% Castro::check_for_nan() 20 0.009342 0.01041 0.01102 0.31% MultiFab::contains_nan() 20 0.009322 0.01038 0.01099 0.31% Castro::computeNewDt() 9 0.009804 0.00981 0.009827 0.28% Castro::construct_old_source() 50 0.008996 0.009265 0.009591 0.27% Castro::construct_old_gravity_source() 10 0.008921 0.009187 0.009511 0.27% Castro::initMFs() 1 0.006452 0.006896 0.007862 0.22% Other 261 0.02665 0.03094 0.03368 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-12-g5bdac9102517) finalized