Initializing AMReX (24.06-13-gdad25a49a99c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-13-gdad25a49a99c) initialized Starting run at 05:38:45 UTC on 2024-06-13. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-13-gdad25a49a Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015862448 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373834042 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.375503931 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333781988 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373605572 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336212937 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.316273402 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318298632 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316262983 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31974646 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317309926 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00766508 seconds Ending run at 05:38:49 UTC on 2024-06-13. Run time = 3.609350117 Run time without initialization = 3.393994421 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.609 ... 3.609 ... 3.609 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3605 2.4164 2.5075 69.47% Gravity::make_radial_gravity() 21 0.2925 0.3025 0.3143 8.71% check_for_negative_density() 10 0.02461 0.1191 0.1769 4.90% Castro::initData() 1 0.04818 0.09445 0.1444 4.00% Castro::estTimeStep() 21 0.02295 0.08327 0.1357 3.76% FabArray::ParallelCopy_finish() 41 0.03587 0.05068 0.08335 2.31% amrex::Copy() 193 0.0611 0.07419 0.08235 2.28% FabArray::setVal() 143 0.06039 0.0664 0.07423 2.06% Castro::reset_internal_energy(Fab) 1008 0.04356 0.04653 0.04952 1.37% Castro::normalize_species() 62 0.04131 0.04222 0.04314 1.20% FabArray::ParallelCopy_nowait() 41 0.03391 0.03902 0.04084 1.13% StateData::FillBoundary(geom) 41 0.03109 0.03252 0.03499 0.97% FillPatchIterator::Initialize 41 0.02747 0.03141 0.03301 0.91% Gravity::interpolate_monopole_grav() 21 0.02741 0.02926 0.03043 0.84% Castro::construct_new_gravity_source() 10 0.02246 0.02426 0.02643 0.73% Castro::computeTemp() 63 0.01705 0.01928 0.02042 0.57% Castro::initialize_do_advance() 10 0.01266 0.01701 0.02023 0.56% Amr::writePlotFile() 2 0.008196 0.01108 0.01394 0.39% VisMF::Write(FabArray) 2 0.008758 0.01 0.01292 0.36% FabArray::Saxpy() 20 0.009925 0.01165 0.01281 0.35% Castro::initialize_advance() 10 0.005497 0.01003 0.01271 0.35% FabArray::setDomainBndry() 41 0.00705 0.009414 0.01149 0.32% MultiFab::contains_nan() 20 0.009542 0.01029 0.01113 0.31% Castro::construct_old_gravity_source() 10 0.006392 0.008807 0.009523 0.26% Castro::initMFs() 1 0.006705 0.007901 0.009452 0.26% Castro::construct_new_source() 50 0.005196 0.005845 0.006173 0.17% Gravity::get_new_grav_vector() 11 0.002948 0.003765 0.005331 0.15% main() 1 0.003944 0.004143 0.00468 0.13% Amr::coarseTimeStep() 10 0.001261 0.002153 0.003362 0.09% Gravity::get_old_grav_vector() 10 0.001454 0.001941 0.002396 0.07% Castro::finalize_do_advance() 10 0.0004508 0.001145 0.001735 0.05% AmrLevel::FillPatch() 41 0.0006821 0.0009312 0.001124 0.03% Amr::timeStep() 10 0.0001692 0.0002203 0.000434 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002785 0.0002911 0.000304 0.01% Castro::clean_state() 62 0.0001425 0.0001595 0.0001858 0.01% Castro::do_advance_ctu() 10 0.0001209 0.0001503 0.0001772 0.00% FillPatchIterator::FillFromLevel0() 41 9.765e-05 0.0001101 0.0001271 0.00% StateDataPhysBCFunct::() 41 0.0001 0.0001106 0.0001235 0.00% Castro::do_old_sources() 10 7.406e-05 8.947e-05 0.0001007 0.00% FabArray::ParallelCopy() 41 7.911e-05 8.82e-05 9.905e-05 0.00% FillPatchSingleLevel 41 7.798e-05 8.294e-05 9.201e-05 0.00% Castro::Castro() 1 6.875e-05 7.788e-05 9.15e-05 0.00% Castro::construct_old_source() 50 4.91e-05 7.116e-05 8.209e-05 0.00% Amr::FinalizeInit() 1 3.867e-06 1.463e-05 7.677e-05 0.00% Castro::do_new_sources() 10 5.116e-05 5.948e-05 6.78e-05 0.00% Castro::subcycle_advance_ctu() 10 4.147e-05 4.981e-05 5.734e-05 0.00% Castro::advance() 10 3.991e-05 4.735e-05 5.561e-05 0.00% Castro::apply_source_to_state() 20 3.069e-05 4.224e-05 5.276e-05 0.00% Amr::defBaseLevel() 1 3.76e-05 4.233e-05 4.53e-05 0.00% Castro::construct_old_gravity() 10 3.167e-05 3.868e-05 4.199e-05 0.00% Castro::construct_new_gravity() 10 2.878e-05 3.441e-05 4.013e-05 0.00% Castro::check_for_nan() 20 2.255e-05 2.541e-05 2.792e-05 0.00% Castro::expand_state() 10 1.863e-05 2.239e-05 2.788e-05 0.00% Castro::post_timestep() 10 1.503e-05 1.884e-05 2.339e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.383e-05 1.722e-05 2.007e-05 0.00% Castro::post_init() 1 8.629e-06 1.044e-05 1.704e-05 0.00% Castro::computeNewDt() 9 7.493e-06 1.07e-05 1.675e-05 0.00% Amr::InitializeInit() 1 2.677e-06 3.68e-06 6.586e-06 0.00% Amr::init() 1 1.741e-06 2.524e-06 5.966e-06 0.00% Castro::computeInitialDt() 2 3.151e-06 4.038e-06 5.059e-06 0.00% Amr::initialInit() 1 1.433e-06 1.636e-06 1.935e-06 0.00% Other 260 0.01638 0.01934 0.0223 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.609 3.609 3.609 100.00% Amr::coarseTimeStep() 10 3.382 3.382 3.382 93.69% Amr::timeStep() 10 3.368 3.369 3.37 93.37% Castro::advance() 10 3.353 3.353 3.354 92.93% Castro::subcycle_advance_ctu() 10 3.275 3.282 3.292 91.20% Castro::do_advance_ctu() 10 3.275 3.282 3.292 91.20% Castro::construct_ctu_hydro_source() 10 2.553 2.556 2.56 70.94% Gravity::make_radial_gravity() 21 0.3077 0.3177 0.3275 9.07% Gravity::get_new_grav_vector() 11 0.2123 0.2138 0.2165 6.00% Amr::init() 1 0.2146 0.2147 0.2148 5.95% AmrLevel::FillPatch() 41 0.1812 0.1941 0.2081 5.77% Amr::initialInit() 1 0.1981 0.1989 0.1994 5.52% Castro::construct_old_gravity() 10 0.1798 0.186 0.1932 5.35% Gravity::get_old_grav_vector() 10 0.1792 0.1853 0.1926 5.34% Castro::construct_new_gravity() 10 0.1871 0.1885 0.1903 5.27% FillPatchIterator::Initialize 41 0.151 0.1635 0.1834 5.08% check_for_negative_density() 10 0.02461 0.1191 0.1769 4.90% Castro::initialize_do_advance() 10 0.1568 0.1636 0.1713 4.75% Amr::InitializeInit() 1 0.06727 0.1166 0.1693 4.69% Amr::defBaseLevel() 1 0.06727 0.1166 0.1693 4.69% FillPatchIterator::FillFromLevel0() 41 0.1085 0.1227 0.1489 4.13% FillPatchSingleLevel 41 0.1084 0.1226 0.1488 4.12% Castro::initData() 1 0.05176 0.09819 0.1482 4.11% Castro::estTimeStep() 21 0.02295 0.08327 0.1357 3.76% Amr::FinalizeInit() 1 0.03 0.08233 0.1321 3.66% Castro::expand_state() 10 0.1012 0.1109 0.1206 3.34% Castro::clean_state() 62 0.1076 0.1135 0.1185 3.28% FabArray::ParallelCopy() 41 0.07505 0.08988 0.1174 3.25% Castro::computeInitialDt() 2 0.002628 0.05545 0.1048 2.90% Castro::do_old_sources() 10 0.08599 0.08886 0.09165 2.54% FabArray::ParallelCopy_finish() 41 0.03587 0.05068 0.08335 2.31% amrex::Copy() 193 0.0611 0.07419 0.08235 2.28% Castro::initialize_advance() 10 0.05739 0.06777 0.0747 2.07% FabArray::setVal() 143 0.06039 0.0664 0.07423 2.06% Castro::do_new_sources() 10 0.05909 0.06388 0.07135 1.98% Castro::computeTemp() 63 0.061 0.0661 0.07024 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04384 0.04682 0.04982 1.38% Castro::reset_internal_energy(Fab) 1008 0.04356 0.04653 0.04952 1.37% Castro::normalize_species() 62 0.04131 0.04222 0.04314 1.20% FabArray::ParallelCopy_nowait() 41 0.034 0.03911 0.04092 1.13% StateDataPhysBCFunct::() 41 0.03121 0.03263 0.0351 0.97% StateData::FillBoundary(geom) 41 0.03109 0.03252 0.03499 0.97% Castro::construct_new_source() 50 0.02766 0.03011 0.03255 0.90% Gravity::interpolate_monopole_grav() 21 0.02741 0.02926 0.03043 0.84% Castro::post_init() 1 0.02577 0.0265 0.02695 0.75% Castro::construct_new_gravity_source() 10 0.02246 0.02426 0.02643 0.73% Castro::finalize_do_advance() 10 0.01239 0.01984 0.02588 0.72% Amr::writePlotFile() 2 0.02309 0.02358 0.02441 0.68% Castro::post_timestep() 10 0.015 0.01563 0.01617 0.45% Castro::Castro() 1 0.009438 0.01155 0.01298 0.36% VisMF::Write(FabArray) 2 0.008758 0.01 0.01292 0.36% Castro::apply_source_to_state() 20 0.009956 0.01169 0.01286 0.36% FabArray::Saxpy() 20 0.009925 0.01165 0.01281 0.35% FabArray::setDomainBndry() 41 0.00705 0.009414 0.01149 0.32% Castro::check_for_nan() 20 0.00957 0.01032 0.01116 0.31% MultiFab::contains_nan() 20 0.009542 0.01029 0.01113 0.31% Castro::construct_old_source() 50 0.006441 0.008878 0.009603 0.27% Castro::construct_old_gravity_source() 10 0.006392 0.008807 0.009523 0.26% Castro::initMFs() 1 0.006705 0.007901 0.009452 0.26% Castro::computeNewDt() 9 0.009125 0.009149 0.009171 0.25% AmrLevel::AmrLevel(dm) 1 0.005787 0.006618 0.008026 0.22% Other 260 0.02088 0.0246 0.02823 0.78% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 40 B 46 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-13-gdad25a49a99c) finalized