Initializing AMReX (24.06-13-gdad25a49a99c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-13-gdad25a49a99c) initialized Starting run at 05:21:19 UTC on 2024-06-14. Successfully read inputs file ... Castro git describe: 24.06-8-gf5603db9e AMReX git describe: 24.06-13-gdad25a49a Microphysics git describe: 24.06-6-ge56bbf10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019698677 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.43806513 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.412398655 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.406359588 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.447284818 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.409347822 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.405115757 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.402552239 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.40374354 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.410886564 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.405804942 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.045202223 seconds Ending run at 05:21:23 UTC on 2024-06-14. Run time = 4.401139152 Run time without initialization = 4.195245008 Average number of zones advanced per microsecond: 0.625 Average number of zones advanced per microsecond per rank: 0.078 TinyProfiler total time across processes [min...avg...max]: 4.4 ... 4.401 ... 4.401 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5448 2.8239 3.0679 69.71% check_for_negative_density() 10 0.01107 0.2601 0.5463 12.41% Gravity::make_radial_gravity() 21 0.2907 0.3105 0.335 7.61% amrex::Copy() 193 0.09187 0.1157 0.1309 2.97% Castro::initData() 1 0.04891 0.08723 0.1242 2.82% Castro::estTimeStep() 21 0.02403 0.06699 0.1133 2.57% FabArray::setVal() 143 0.08776 0.1028 0.1132 2.57% FabArray::ParallelCopy_finish() 41 0.05473 0.07029 0.1012 2.30% FabArray::ParallelCopy_nowait() 41 0.05524 0.05989 0.06306 1.43% FillPatchIterator::Initialize 41 0.04811 0.05451 0.05951 1.35% Castro::reset_internal_energy(Fab) 1008 0.05025 0.05238 0.05413 1.23% Amr::writePlotFile() 2 0.04251 0.04562 0.04744 1.08% StateData::FillBoundary(geom) 41 0.0346 0.04073 0.04713 1.07% Castro::normalize_species() 62 0.04247 0.04325 0.04486 1.02% Castro::construct_new_gravity_source() 10 0.02832 0.03109 0.03372 0.77% Gravity::interpolate_monopole_grav() 21 0.02705 0.02898 0.03002 0.68% Castro::initialize_do_advance() 10 0.02414 0.02505 0.02637 0.60% Castro::computeTemp() 63 0.0212 0.02174 0.02314 0.53% FabArray::setDomainBndry() 41 0.01411 0.01854 0.02179 0.50% FabArray::Saxpy() 20 0.01823 0.01917 0.02046 0.46% VisMF::Write(FabArray) 2 0.01194 0.0139 0.01956 0.44% Castro::initialize_advance() 10 0.01528 0.01651 0.01775 0.40% Castro::construct_old_gravity_source() 10 0.01357 0.01477 0.01548 0.35% MultiFab::contains_nan() 20 0.01196 0.0132 0.01538 0.35% Castro::initMFs() 1 0.009182 0.009485 0.009976 0.23% Castro::construct_new_source() 50 0.007254 0.007945 0.008627 0.20% main() 1 0.006025 0.007105 0.0076 0.17% Gravity::get_new_grav_vector() 11 0.004527 0.005578 0.006449 0.15% Gravity::get_old_grav_vector() 10 0.002486 0.002965 0.003146 0.07% Amr::coarseTimeStep() 10 0.001461 0.00197 0.002406 0.05% AmrLevel::FillPatch() 41 0.001027 0.001361 0.001633 0.04% Castro::finalize_do_advance() 10 0.001143 0.001266 0.001344 0.03% Amr::timeStep() 10 0.0001841 0.0002812 0.0006763 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003288 0.0003443 0.0003559 0.01% Castro::do_advance_ctu() 10 0.0001877 0.0002118 0.0002356 0.01% Castro::clean_state() 62 0.0001962 0.0002153 0.0002336 0.01% Castro::Castro() 1 0.0001468 0.0001804 0.0002117 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001553 0.0001651 0.0001852 0.00% StateDataPhysBCFunct::() 41 0.0001356 0.0001526 0.0001628 0.00% Castro::do_old_sources() 10 0.0001256 0.0001401 0.0001563 0.00% FillPatchSingleLevel 41 0.0001073 0.0001234 0.0001476 0.00% FabArray::ParallelCopy() 41 0.0001216 0.0001284 0.0001401 0.00% Castro::construct_old_source() 50 0.0001009 0.0001084 0.0001194 0.00% Amr::FinalizeInit() 1 4.602e-06 1.8e-05 9.681e-05 0.00% Castro::do_new_sources() 10 6.935e-05 7.653e-05 8.578e-05 0.00% Castro::subcycle_advance_ctu() 10 6.007e-05 6.849e-05 7.903e-05 0.00% Castro::advance() 10 5.714e-05 6.312e-05 7.374e-05 0.00% Castro::apply_source_to_state() 20 6.26e-05 6.708e-05 7.32e-05 0.00% Amr::defBaseLevel() 1 4.107e-05 5.085e-05 6.557e-05 0.00% Castro::construct_new_gravity() 10 3.435e-05 4.407e-05 5.758e-05 0.00% Castro::construct_old_gravity() 10 4.089e-05 4.823e-05 5.29e-05 0.00% Castro::expand_state() 10 3.031e-05 3.709e-05 4.537e-05 0.00% Castro::check_for_nan() 20 2.703e-05 3.057e-05 3.572e-05 0.00% Castro::post_timestep() 10 1.985e-05 2.352e-05 2.785e-05 0.00% Castro::post_init() 1 1.053e-05 1.167e-05 1.436e-05 0.00% Castro::computeNewDt() 9 7.475e-06 9.643e-06 1.147e-05 0.00% Castro::computeInitialDt() 2 4.545e-06 5.032e-06 5.994e-06 0.00% Amr::InitializeInit() 1 2.506e-06 3.51e-06 5.834e-06 0.00% Amr::init() 1 2.06e-06 2.728e-06 3.691e-06 0.00% Amr::initialInit() 1 1.712e-06 2.058e-06 3.327e-06 0.00% Other 261 0.01975 0.02364 0.02514 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.4 4.401 4.401 100.00% Amr::coarseTimeStep() 10 4.142 4.142 4.142 94.12% Amr::timeStep() 10 4.13 4.13 4.131 93.86% Castro::advance() 10 4.113 4.114 4.115 93.49% Castro::subcycle_advance_ctu() 10 4.002 4.009 4.022 91.38% Castro::do_advance_ctu() 10 4.002 4.009 4.022 91.38% Castro::construct_ctu_hydro_source() 10 3.1 3.106 3.117 70.81% check_for_negative_density() 10 0.01107 0.2601 0.5463 12.41% Gravity::make_radial_gravity() 21 0.3136 0.3343 0.3587 8.15% AmrLevel::FillPatch() 41 0.2755 0.2927 0.3068 6.97% FillPatchIterator::Initialize 41 0.2353 0.2446 0.254 5.77% Castro::initialize_do_advance() 10 0.2246 0.2358 0.2473 5.62% Gravity::get_new_grav_vector() 11 0.23 0.2316 0.2329 5.29% Castro::construct_old_gravity() 10 0.191 0.2073 0.2263 5.14% Gravity::get_old_grav_vector() 10 0.1901 0.2065 0.2255 5.12% Castro::construct_new_gravity() 10 0.2021 0.2042 0.2057 4.67% Amr::init() 1 0.2052 0.2053 0.2053 4.67% FillPatchIterator::FillFromLevel0() 41 0.1579 0.1716 0.1918 4.36% FillPatchSingleLevel 41 0.1577 0.1714 0.1916 4.35% Amr::initialInit() 1 0.1853 0.1861 0.1863 4.23% Castro::expand_state() 10 0.1551 0.1664 0.1796 4.08% FabArray::ParallelCopy() 41 0.1163 0.1304 0.1567 3.56% Amr::InitializeInit() 1 0.07884 0.1172 0.1545 3.51% Amr::defBaseLevel() 1 0.07883 0.1172 0.1545 3.51% Castro::do_old_sources() 10 0.1333 0.137 0.1384 3.14% amrex::Copy() 193 0.09187 0.1157 0.1309 2.97% Castro::initData() 1 0.05358 0.09211 0.1286 2.92% Castro::clean_state() 62 0.1225 0.1241 0.1277 2.90% Castro::estTimeStep() 21 0.02403 0.06699 0.1133 2.57% FabArray::setVal() 143 0.08776 0.1028 0.1132 2.57% Castro::initialize_advance() 10 0.08743 0.1 0.1077 2.45% Amr::FinalizeInit() 1 0.0318 0.06898 0.1075 2.44% FabArray::ParallelCopy_finish() 41 0.05473 0.07029 0.1012 2.30% Castro::do_new_sources() 10 0.07048 0.0776 0.08404 1.91% Castro::computeInitialDt() 2 0.002393 0.03971 0.07807 1.77% Castro::computeTemp() 63 0.07224 0.07447 0.07761 1.76% Amr::writePlotFile() 2 0.06431 0.06449 0.0652 1.48% FabArray::ParallelCopy_nowait() 41 0.05538 0.06001 0.06318 1.44% Castro::reset_internal_energy(MultiFab) 63 0.05059 0.05273 0.05447 1.24% Castro::reset_internal_energy(Fab) 1008 0.05025 0.05238 0.05413 1.23% StateDataPhysBCFunct::() 41 0.03475 0.04088 0.04728 1.07% StateData::FillBoundary(geom) 41 0.0346 0.04073 0.04713 1.07% Castro::normalize_species() 62 0.04247 0.04325 0.04486 1.02% Castro::construct_new_source() 50 0.03558 0.03904 0.04235 0.96% Castro::construct_new_gravity_source() 10 0.02832 0.03109 0.03372 0.77% Gravity::interpolate_monopole_grav() 21 0.02705 0.02898 0.03002 0.68% Castro::finalize_do_advance() 10 0.01205 0.01956 0.0296 0.67% Castro::post_init() 1 0.02799 0.02878 0.02908 0.66% FabArray::setDomainBndry() 41 0.01411 0.01854 0.02179 0.50% Castro::apply_source_to_state() 20 0.0183 0.01924 0.02053 0.47% FabArray::Saxpy() 20 0.01823 0.01917 0.02046 0.46% VisMF::Write(FabArray) 2 0.01194 0.0139 0.01956 0.44% Castro::Castro() 1 0.01636 0.01718 0.01823 0.41% Castro::post_timestep() 10 0.01526 0.01585 0.01656 0.38% Castro::construct_old_source() 50 0.01367 0.01488 0.01559 0.35% Castro::construct_old_gravity_source() 10 0.01357 0.01477 0.01548 0.35% Castro::check_for_nan() 20 0.01198 0.01323 0.01541 0.35% MultiFab::contains_nan() 20 0.01196 0.0132 0.01538 0.35% Castro::initMFs() 1 0.009182 0.009485 0.009976 0.23% Castro::computeNewDt() 9 0.008987 0.009002 0.009015 0.20% Other 261 0.03282 0.0378 0.04011 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-13-gdad25a49a99c) finalized