Initializing AMReX (24.06-16-g1f038e767011)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-16-g1f038e767011) initialized Starting run at 05:21:01 UTC on 2024-06-18. Successfully read inputs file ... Castro git describe: 24.06-9-g622dd7b58 AMReX git describe: 24.06-16-g1f038e767 Microphysics git describe: 24.06-10-g30469dd4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014785331 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363979207 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.383582455 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.362323674 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.378687605 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.339629257 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313996187 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313022553 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313173169 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314142758 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315559608 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008283119 seconds Ending run at 05:21:05 UTC on 2024-06-18. Run time = 3.607207433 Run time without initialization = 3.411323406 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.607 ... 3.607 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2931 2.4204 2.4856 68.90% Gravity::make_radial_gravity() 21 0.2893 0.2967 0.3109 8.62% check_for_negative_density() 10 0.03872 0.1072 0.2392 6.63% Castro::initData() 1 0.04734 0.08922 0.1314 3.64% Castro::estTimeStep() 21 0.03558 0.07678 0.1242 3.44% amrex::Copy() 193 0.06231 0.0786 0.08598 2.38% FabArray::setVal() 143 0.06451 0.0705 0.08227 2.28% FabArray::ParallelCopy_finish() 41 0.03691 0.0573 0.08109 2.25% Castro::normalize_species() 62 0.04096 0.04418 0.04978 1.38% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04699 0.04937 1.37% FabArray::ParallelCopy_nowait() 41 0.03535 0.04058 0.04206 1.17% FillPatchIterator::Initialize 41 0.02805 0.03315 0.03705 1.03% StateData::FillBoundary(geom) 41 0.02946 0.03274 0.03578 0.99% Gravity::interpolate_monopole_grav() 21 0.02752 0.02904 0.03161 0.88% Castro::construct_new_gravity_source() 10 0.0231 0.02468 0.02774 0.77% Castro::computeTemp() 63 0.01758 0.01965 0.02096 0.58% Castro::initialize_do_advance() 10 0.01314 0.01762 0.02081 0.58% Castro::initialize_advance() 10 0.00989 0.01118 0.01337 0.37% FabArray::Saxpy() 20 0.0103 0.01194 0.01277 0.35% FabArray::setDomainBndry() 41 0.007382 0.01005 0.0124 0.34% MultiFab::contains_nan() 20 0.009563 0.01041 0.01176 0.33% Amr::writePlotFile() 2 0.01 0.01105 0.01159 0.32% VisMF::Write(FabArray) 2 0.009081 0.009538 0.01151 0.32% Castro::construct_old_gravity_source() 10 0.006559 0.009022 0.009968 0.28% Castro::initMFs() 1 0.006364 0.007064 0.007438 0.21% Castro::construct_new_source() 50 0.005297 0.005958 0.006243 0.17% Gravity::get_new_grav_vector() 11 0.003278 0.003808 0.005021 0.14% Amr::coarseTimeStep() 10 0.001467 0.002936 0.004322 0.12% main() 1 0.003653 0.003968 0.004246 0.12% Gravity::get_old_grav_vector() 10 0.001526 0.00213 0.002573 0.07% AmrLevel::FillPatch() 41 0.0007187 0.001013 0.001163 0.03% Castro::finalize_do_advance() 10 0.0004511 0.0009926 0.001106 0.03% Amr::timeStep() 10 0.0001764 0.0002406 0.0004082 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002807 0.0002941 0.0003283 0.01% Castro::clean_state() 62 0.0001513 0.0001674 0.0002314 0.01% Castro::do_advance_ctu() 10 0.0001454 0.0001621 0.0001899 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001124 0.0001238 0.0001426 0.00% Castro::do_old_sources() 10 8.241e-05 9.403e-05 0.0001089 0.00% FabArray::ParallelCopy() 41 8.622e-05 9.59e-05 0.0001081 0.00% StateDataPhysBCFunct::() 41 9.551e-05 0.0001014 0.000108 0.00% Castro::Castro() 1 6.778e-05 7.98e-05 9.789e-05 0.00% Amr::FinalizeInit() 1 3.844e-06 1.648e-05 9.505e-05 0.00% Castro::construct_old_source() 50 6.227e-05 8.04e-05 9.4e-05 0.00% FillPatchSingleLevel 41 7.556e-05 8.127e-05 8.707e-05 0.00% Castro::do_new_sources() 10 5.594e-05 5.802e-05 6.607e-05 0.00% Castro::advance() 10 4.063e-05 4.977e-05 5.861e-05 0.00% Castro::subcycle_advance_ctu() 10 4.317e-05 4.965e-05 5.297e-05 0.00% Castro::apply_source_to_state() 20 4.038e-05 4.547e-05 5.155e-05 0.00% Amr::defBaseLevel() 1 3.712e-05 4.031e-05 4.711e-05 0.00% Castro::construct_new_gravity() 10 2.989e-05 3.721e-05 4.376e-05 0.00% Castro::construct_old_gravity() 10 3.514e-05 3.824e-05 4.187e-05 0.00% Castro::expand_state() 10 2.242e-05 2.819e-05 3.706e-05 0.00% Castro::post_timestep() 10 1.607e-05 1.953e-05 3.572e-05 0.00% Castro::check_for_nan() 20 2.197e-05 2.49e-05 3.066e-05 0.00% Castro::computeNewDt() 9 8.737e-06 1.081e-05 1.785e-05 0.00% Castro::post_init() 1 6.353e-06 9.337e-06 1.071e-05 0.00% Amr::init() 1 2.136e-06 3.392e-06 8.535e-06 0.00% Amr::InitializeInit() 1 2.679e-06 3.65e-06 6.679e-06 0.00% Castro::computeInitialDt() 2 2.906e-06 3.709e-06 4.729e-06 0.00% Amr::initialInit() 1 1.4e-06 1.872e-06 2.544e-06 0.00% Other 261 0.0155 0.01858 0.01986 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.607 3.607 100.00% Amr::coarseTimeStep() 10 3.399 3.399 3.399 94.22% Amr::timeStep() 10 3.384 3.386 3.387 93.90% Castro::advance() 10 3.369 3.369 3.37 93.43% Castro::subcycle_advance_ctu() 10 3.285 3.293 3.299 91.44% Castro::do_advance_ctu() 10 3.284 3.293 3.299 91.44% Castro::construct_ctu_hydro_source() 10 2.546 2.549 2.556 70.86% Gravity::make_radial_gravity() 21 0.3053 0.3129 0.3249 9.01% check_for_negative_density() 10 0.03872 0.1072 0.2392 6.63% Gravity::get_new_grav_vector() 11 0.213 0.2161 0.2189 6.07% AmrLevel::FillPatch() 41 0.1975 0.2068 0.2165 6.00% Castro::construct_new_gravity() 10 0.1906 0.1934 0.1958 5.43% Amr::init() 1 0.1951 0.1953 0.1954 5.42% Castro::construct_old_gravity() 10 0.178 0.184 0.1953 5.41% Gravity::get_old_grav_vector() 10 0.1768 0.1832 0.1947 5.40% FillPatchIterator::Initialize 41 0.1621 0.1743 0.1822 5.05% Amr::initialInit() 1 0.1802 0.1804 0.1806 5.01% Castro::initialize_do_advance() 10 0.1574 0.1702 0.1765 4.89% Amr::InitializeInit() 1 0.06661 0.1104 0.1537 4.26% Amr::defBaseLevel() 1 0.0666 0.1103 0.1537 4.26% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1311 0.1464 4.06% FillPatchSingleLevel 41 0.1146 0.131 0.1463 4.06% Castro::initData() 1 0.05123 0.09316 0.1356 3.76% Castro::expand_state() 10 0.1095 0.1171 0.1253 3.47% Castro::clean_state() 62 0.1075 0.1162 0.1252 3.47% Castro::estTimeStep() 21 0.03558 0.07678 0.1242 3.44% FabArray::ParallelCopy() 41 0.07868 0.09807 0.1166 3.23% Amr::FinalizeInit() 1 0.02669 0.07008 0.114 3.16% Castro::do_old_sources() 10 0.08917 0.09242 0.09549 2.65% Castro::computeInitialDt() 2 0.002356 0.04571 0.08955 2.48% amrex::Copy() 193 0.06231 0.0786 0.08598 2.38% FabArray::setVal() 143 0.06451 0.0705 0.08227 2.28% Castro::initialize_advance() 10 0.06731 0.07263 0.0814 2.26% FabArray::ParallelCopy_finish() 41 0.03691 0.0573 0.08109 2.25% Castro::do_new_sources() 10 0.06055 0.06554 0.07461 2.07% Castro::computeTemp() 63 0.06155 0.06693 0.07061 1.96% Castro::normalize_species() 62 0.04096 0.04418 0.04978 1.38% Castro::reset_internal_energy(MultiFab) 63 0.04397 0.04728 0.04966 1.38% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04699 0.04937 1.37% FabArray::ParallelCopy_nowait() 41 0.03546 0.04067 0.04214 1.17% StateDataPhysBCFunct::() 41 0.02956 0.03284 0.03588 0.99% StateData::FillBoundary(geom) 41 0.02946 0.03274 0.03578 0.99% Castro::construct_new_source() 50 0.02916 0.03063 0.03377 0.94% Gravity::interpolate_monopole_grav() 21 0.02752 0.02904 0.03161 0.88% Castro::finalize_do_advance() 10 0.01295 0.02296 0.02784 0.77% Castro::construct_new_gravity_source() 10 0.0231 0.02468 0.02774 0.77% Castro::post_init() 1 0.02361 0.02386 0.0242 0.67% Amr::writePlotFile() 2 0.02309 0.02324 0.02337 0.65% Castro::post_timestep() 10 0.01469 0.01586 0.01756 0.49% Castro::apply_source_to_state() 20 0.01035 0.01199 0.01281 0.36% FabArray::Saxpy() 20 0.0103 0.01194 0.01277 0.35% FabArray::setDomainBndry() 41 0.007382 0.01005 0.0124 0.34% Castro::Castro() 1 0.00956 0.01104 0.01179 0.33% Castro::check_for_nan() 20 0.009589 0.01044 0.01179 0.33% MultiFab::contains_nan() 20 0.009563 0.01041 0.01176 0.33% VisMF::Write(FabArray) 2 0.009081 0.009538 0.01151 0.32% Castro::construct_old_source() 50 0.006621 0.009102 0.01005 0.28% Castro::construct_old_gravity_source() 10 0.006559 0.009022 0.009968 0.28% Castro::computeNewDt() 9 0.009098 0.009111 0.009134 0.25% Castro::initMFs() 1 0.006364 0.007064 0.007438 0.21% Other 261 0.02557 0.03003 0.03241 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-16-g1f038e767011) finalized