Initializing AMReX (24.06-16-g1f038e767011)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-16-g1f038e767011) initialized Starting run at 19:19:52 UTC on 2024-06-19. Successfully read inputs file ... Castro git describe: 24.06-14-g5f48f9561 AMReX git describe: 24.06-16-g1f038e767 Microphysics git describe: 24.06-10-g30469dd4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014176358 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361042654 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369026799 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.399180115 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.392464791 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362957239 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327243261 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.329100313 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.322687221 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334080389 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.336820285 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007652148 seconds Ending run at 19:19:56 UTC on 2024-06-19. Run time = 3.737635457 Run time without initialization = 3.547288221 Average number of zones advanced per microsecond: 0.739 Average number of zones advanced per microsecond per rank: 0.092 TinyProfiler total time across processes [min...avg...max]: 3.737 ... 3.737 ... 3.738 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3274 2.4614 2.5988 69.53% Gravity::make_radial_gravity() 21 0.3103 0.3191 0.3403 9.10% check_for_negative_density() 10 0.03233 0.1755 0.3166 8.47% Castro::initData() 1 0.04867 0.09161 0.1279 3.42% Castro::estTimeStep() 21 0.02685 0.07208 0.1128 3.02% FabArray::ParallelCopy_finish() 41 0.03854 0.05746 0.09999 2.68% amrex::Copy() 193 0.05799 0.07781 0.08687 2.32% FabArray::setVal() 143 0.0571 0.06485 0.07471 2.00% Castro::normalize_species() 62 0.04144 0.04914 0.06024 1.61% Castro::reset_internal_energy(Fab) 1008 0.04662 0.04805 0.05154 1.38% FabArray::ParallelCopy_nowait() 41 0.03238 0.04071 0.04293 1.15% StateData::FillBoundary(geom) 41 0.02924 0.03416 0.03948 1.06% FillPatchIterator::Initialize 41 0.0272 0.03277 0.0342 0.91% Gravity::interpolate_monopole_grav() 21 0.02809 0.02919 0.03067 0.82% Castro::construct_new_gravity_source() 10 0.02162 0.02379 0.02563 0.69% Castro::computeTemp() 63 0.01934 0.02056 0.02201 0.59% Castro::initialize_do_advance() 10 0.01252 0.01789 0.02095 0.56% Castro::initialize_advance() 10 0.005506 0.00995 0.01372 0.37% FabArray::Saxpy() 20 0.009354 0.01156 0.01256 0.34% VisMF::Write(FabArray) 2 0.009018 0.009567 0.01198 0.32% MultiFab::contains_nan() 20 0.009662 0.01084 0.01168 0.31% Amr::writePlotFile() 2 0.007354 0.009741 0.01137 0.30% FabArray::setDomainBndry() 41 0.006973 0.009678 0.01096 0.29% Castro::initMFs() 1 0.006348 0.007658 0.009925 0.27% Castro::construct_old_gravity_source() 10 0.006222 0.008749 0.009499 0.25% Amr::coarseTimeStep() 10 0.003149 0.00491 0.006915 0.19% Castro::construct_new_source() 50 0.005054 0.005935 0.006445 0.17% Gravity::get_new_grav_vector() 11 0.002605 0.003579 0.004497 0.12% main() 1 0.00341 0.00377 0.004338 0.12% Gravity::get_old_grav_vector() 10 0.001488 0.002212 0.002557 0.07% Castro::finalize_do_advance() 10 0.000478 0.0009295 0.001027 0.03% AmrLevel::FillPatch() 41 0.000657 0.0008172 0.0009009 0.02% Amr::timeStep() 10 0.0001853 0.0002352 0.0004611 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002808 0.0002967 0.0003114 0.01% Castro::clean_state() 62 0.0001493 0.0001699 0.000192 0.01% Castro::do_advance_ctu() 10 0.0001353 0.0001669 0.0001917 0.01% Castro::construct_new_gravity() 10 3.147e-05 4.76e-05 0.0001397 0.00% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001165 0.0001311 0.00% StateDataPhysBCFunct::() 41 9.657e-05 0.0001067 0.0001226 0.00% Castro::do_old_sources() 10 7.066e-05 9.376e-05 0.0001133 0.00% FabArray::ParallelCopy() 41 7.286e-05 9.371e-05 0.0001125 0.00% Castro::Castro() 1 6.47e-05 8.051e-05 0.0001012 0.00% Amr::FinalizeInit() 1 3.208e-06 1.512e-05 9.222e-05 0.00% FillPatchSingleLevel 41 6.472e-05 7.863e-05 8.714e-05 0.00% Castro::construct_old_source() 50 5.115e-05 7.372e-05 8.496e-05 0.00% Castro::do_new_sources() 10 4.641e-05 5.99e-05 6.816e-05 0.00% Amr::defBaseLevel() 1 4.088e-05 4.698e-05 6.21e-05 0.00% Castro::subcycle_advance_ctu() 10 3.726e-05 5.036e-05 6.017e-05 0.00% Castro::advance() 10 4.147e-05 4.87e-05 5.282e-05 0.00% Castro::apply_source_to_state() 20 3.582e-05 4.504e-05 5.21e-05 0.00% Castro::construct_old_gravity() 10 3.26e-05 3.958e-05 4.441e-05 0.00% Castro::expand_state() 10 2.197e-05 2.952e-05 4e-05 0.00% Castro::check_for_nan() 20 2.435e-05 2.677e-05 2.879e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.141e-05 1.682e-05 2.58e-05 0.00% Castro::post_timestep() 10 1.603e-05 1.739e-05 1.982e-05 0.00% Castro::computeNewDt() 9 9.28e-06 1.094e-05 1.44e-05 0.00% Castro::post_init() 1 7.791e-06 9.333e-06 1.174e-05 0.00% Amr::InitializeInit() 1 2.562e-06 3.612e-06 5.841e-06 0.00% Castro::computeInitialDt() 2 2.905e-06 3.54e-06 3.997e-06 0.00% Amr::init() 1 2.245e-06 2.649e-06 3.487e-06 0.00% Amr::initialInit() 1 1.396e-06 1.761e-06 2.294e-06 0.00% Other 260 0.01598 0.01914 0.02273 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.737 3.737 3.738 100.00% Amr::coarseTimeStep() 10 3.535 3.535 3.535 94.59% Amr::timeStep() 10 3.517 3.519 3.521 94.20% Castro::advance() 10 3.501 3.502 3.502 93.70% Castro::subcycle_advance_ctu() 10 3.422 3.43 3.442 92.08% Castro::do_advance_ctu() 10 3.422 3.43 3.442 92.08% Castro::construct_ctu_hydro_source() 10 2.655 2.66 2.665 71.31% Gravity::make_radial_gravity() 21 0.3272 0.3348 0.3528 9.44% check_for_negative_density() 10 0.03233 0.1755 0.3166 8.47% Gravity::get_new_grav_vector() 11 0.2191 0.2222 0.2234 5.98% AmrLevel::FillPatch() 41 0.1993 0.2078 0.2189 5.86% Castro::construct_old_gravity() 10 0.1924 0.1968 0.2098 5.61% Gravity::get_old_grav_vector() 10 0.1916 0.1961 0.2092 5.60% Castro::construct_new_gravity() 10 0.197 0.2 0.2014 5.39% FillPatchIterator::Initialize 41 0.1646 0.1753 0.1962 5.25% Amr::init() 1 0.1894 0.1897 0.1898 5.08% Castro::initialize_do_advance() 10 0.1701 0.1737 0.1791 4.79% Amr::initialInit() 1 0.1751 0.1754 0.1757 4.70% FillPatchIterator::FillFromLevel0() 41 0.12 0.1328 0.162 4.34% FillPatchSingleLevel 41 0.1199 0.1327 0.1619 4.33% Amr::InitializeInit() 1 0.0676 0.1134 0.1493 3.99% Amr::defBaseLevel() 1 0.0676 0.1134 0.1493 3.99% Castro::clean_state() 62 0.1125 0.1232 0.1332 3.56% FabArray::ParallelCopy() 41 0.0802 0.09836 0.1325 3.55% Castro::initData() 1 0.0522 0.09537 0.1318 3.52% Castro::expand_state() 10 0.1102 0.1195 0.1256 3.36% Castro::estTimeStep() 21 0.02685 0.07208 0.1128 3.02% Amr::FinalizeInit() 1 0.02593 0.06204 0.1076 2.88% FabArray::ParallelCopy_finish() 41 0.03854 0.05746 0.09999 2.68% Castro::do_old_sources() 10 0.09212 0.09419 0.09612 2.57% amrex::Copy() 193 0.05799 0.07781 0.08687 2.32% Castro::computeInitialDt() 2 0.002341 0.03812 0.08385 2.24% Castro::initialize_advance() 10 0.05597 0.06822 0.0765 2.05% FabArray::setVal() 143 0.0571 0.06485 0.07471 2.00% Castro::computeTemp() 63 0.06624 0.0689 0.07386 1.98% Castro::do_new_sources() 10 0.05804 0.06541 0.07272 1.95% Castro::normalize_species() 62 0.04144 0.04914 0.06024 1.61% Castro::reset_internal_energy(MultiFab) 63 0.0469 0.04834 0.05186 1.39% Castro::reset_internal_energy(Fab) 1008 0.04662 0.04805 0.05154 1.38% FabArray::ParallelCopy_nowait() 41 0.03247 0.0408 0.04301 1.15% StateDataPhysBCFunct::() 41 0.02933 0.03427 0.03959 1.06% StateData::FillBoundary(geom) 41 0.02924 0.03416 0.03948 1.06% Castro::finalize_do_advance() 10 0.01522 0.0246 0.03249 0.87% Castro::construct_new_source() 50 0.02667 0.02972 0.03165 0.85% Gravity::interpolate_monopole_grav() 21 0.02809 0.02919 0.03067 0.82% Castro::construct_new_gravity_source() 10 0.02162 0.02379 0.02563 0.69% Castro::post_init() 1 0.02313 0.02334 0.0236 0.63% Amr::writePlotFile() 2 0.02182 0.02199 0.02236 0.60% Castro::post_timestep() 10 0.01577 0.01725 0.01901 0.51% Castro::Castro() 1 0.009521 0.01129 0.01409 0.38% Castro::apply_source_to_state() 20 0.00939 0.0116 0.0126 0.34% FabArray::Saxpy() 20 0.009354 0.01156 0.01256 0.34% VisMF::Write(FabArray) 2 0.009018 0.009567 0.01198 0.32% Castro::check_for_nan() 20 0.009689 0.01086 0.01171 0.31% MultiFab::contains_nan() 20 0.009662 0.01084 0.01168 0.31% FabArray::setDomainBndry() 41 0.006973 0.009678 0.01096 0.29% Castro::computeNewDt() 9 0.0103 0.01031 0.01032 0.28% Castro::initMFs() 1 0.006348 0.007658 0.009925 0.27% Castro::construct_old_source() 50 0.006273 0.008822 0.009584 0.26% Castro::construct_old_gravity_source() 10 0.006222 0.008749 0.009499 0.25% AmrLevel::AmrLevel(dm) 1 0.005337 0.006377 0.008245 0.22% Other 260 0.02048 0.02456 0.02932 0.78% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 41 B 47 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-16-g1f038e767011) finalized