Initializing AMReX (24.06-16-g1f038e767011)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-16-g1f038e767011) initialized Starting run at 05:21:00 UTC on 2024-06-19. Successfully read inputs file ... Castro git describe: 24.06-13-gbf363d809 AMReX git describe: 24.06-16-g1f038e767 Microphysics git describe: 24.06-10-g30469dd4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015609565 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360559722 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369358831 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334371735 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.370331904 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.339757513 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315175859 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315000543 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315302946 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315176362 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315598353 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007532025 seconds Ending run at 05:21:04 UTC on 2024-06-19. Run time = 3.57412574 Run time without initialization = 3.362791347 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.574 ... 3.574 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3264 2.3992 2.4693 69.09% Gravity::make_radial_gravity() 21 0.2929 0.3003 0.3187 8.92% check_for_negative_density() 10 0.01684 0.08949 0.1663 4.65% Castro::initData() 1 0.04883 0.09357 0.1425 3.99% Castro::estTimeStep() 21 0.02348 0.08089 0.1281 3.58% amrex::Copy() 193 0.06224 0.07543 0.08089 2.26% FabArray::setVal() 143 0.06497 0.07077 0.08053 2.25% FabArray::ParallelCopy_finish() 41 0.04527 0.05366 0.07957 2.23% Castro::reset_internal_energy(Fab) 1008 0.04657 0.04879 0.051 1.43% Castro::normalize_species() 62 0.042 0.04622 0.0493 1.38% FabArray::ParallelCopy_nowait() 41 0.03393 0.03938 0.04104 1.15% StateData::FillBoundary(geom) 41 0.02969 0.03243 0.03588 1.00% FillPatchIterator::Initialize 41 0.0285 0.03185 0.03437 0.96% Gravity::interpolate_monopole_grav() 21 0.02773 0.02928 0.03094 0.87% Castro::construct_new_gravity_source() 10 0.02146 0.02439 0.02727 0.76% Castro::computeTemp() 63 0.02009 0.02041 0.02104 0.59% Castro::initialize_do_advance() 10 0.0137 0.0171 0.01908 0.53% VisMF::Write(FabArray) 2 0.009054 0.009803 0.01353 0.38% Castro::initialize_advance() 10 0.005553 0.01048 0.01271 0.36% FabArray::Saxpy() 20 0.01006 0.01175 0.01238 0.35% MultiFab::contains_nan() 20 0.00946 0.01033 0.01147 0.32% Amr::writePlotFile() 2 0.008038 0.01036 0.01111 0.31% FabArray::setDomainBndry() 41 0.006999 0.008985 0.01026 0.29% Castro::construct_old_gravity_source() 10 0.006614 0.008943 0.009503 0.27% Castro::initMFs() 1 0.007553 0.007614 0.007746 0.22% Castro::construct_new_source() 50 0.00549 0.005991 0.006154 0.17% Gravity::get_new_grav_vector() 11 0.002686 0.003996 0.005343 0.15% Amr::coarseTimeStep() 10 0.003259 0.004029 0.004947 0.14% main() 1 0.003362 0.003708 0.003891 0.11% Gravity::get_old_grav_vector() 10 0.001523 0.002073 0.002667 0.07% Castro::finalize_do_advance() 10 0.0004132 0.001045 0.001259 0.04% AmrLevel::FillPatch() 41 0.0006662 0.0007625 0.0008715 0.02% Amr::timeStep() 10 0.0001441 0.000202 0.0003431 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002797 0.0002907 0.0002994 0.01% Castro::clean_state() 62 0.0001454 0.0001724 0.000214 0.01% Castro::do_advance_ctu() 10 0.0001435 0.0001599 0.0001752 0.00% Castro::Castro() 1 9.425e-05 0.0001103 0.0001411 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001031 0.0001126 0.0001195 0.00% StateDataPhysBCFunct::() 41 8.431e-05 9.486e-05 0.0001075 0.00% Castro::do_old_sources() 10 7.099e-05 8.887e-05 0.0001 0.00% FabArray::ParallelCopy() 41 7.758e-05 8.628e-05 9.342e-05 0.00% Amr::FinalizeInit() 1 3.574e-06 1.428e-05 8.521e-05 0.00% Castro::construct_old_source() 50 4.781e-05 7.043e-05 8.482e-05 0.00% FillPatchSingleLevel 41 6.796e-05 7.423e-05 8.441e-05 0.00% Castro::do_new_sources() 10 4.936e-05 5.84e-05 6.591e-05 0.00% Castro::subcycle_advance_ctu() 10 4.237e-05 5.084e-05 6.156e-05 0.00% Castro::advance() 10 3.743e-05 4.854e-05 5.879e-05 0.00% Castro::apply_source_to_state() 20 3.937e-05 4.475e-05 5.825e-05 0.00% Amr::defBaseLevel() 1 3.985e-05 4.722e-05 5.347e-05 0.00% Castro::construct_old_gravity() 10 3.054e-05 3.515e-05 4.637e-05 0.00% Castro::construct_new_gravity() 10 2.806e-05 3.54e-05 4.155e-05 0.00% Castro::expand_state() 10 2.017e-05 2.579e-05 3.79e-05 0.00% Castro::check_for_nan() 20 2.016e-05 2.331e-05 2.63e-05 0.00% Castro::post_timestep() 10 1.421e-05 1.73e-05 2.172e-05 0.00% Castro::post_init() 1 7.496e-06 9.606e-06 1.542e-05 0.00% Castro::computeNewDt() 9 7.864e-06 9.804e-06 1.154e-05 0.00% Castro::computeInitialDt() 2 3.465e-06 4.198e-06 8.123e-06 0.00% Amr::InitializeInit() 1 2.724e-06 3.558e-06 6.886e-06 0.00% Amr::init() 1 1.756e-06 2.088e-06 2.463e-06 0.00% Amr::initialInit() 1 1.362e-06 1.54e-06 1.817e-06 0.00% Other 261 0.01628 0.01914 0.02087 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.574 3.574 3.574 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 93.77% Amr::timeStep() 10 3.336 3.337 3.338 93.38% Castro::advance() 10 3.319 3.32 3.321 92.91% Castro::subcycle_advance_ctu() 10 3.237 3.244 3.253 91.02% Castro::do_advance_ctu() 10 3.237 3.244 3.253 91.02% Castro::construct_ctu_hydro_source() 10 2.508 2.512 2.514 70.35% Gravity::make_radial_gravity() 21 0.3077 0.316 0.3321 9.29% Gravity::get_new_grav_vector() 11 0.2125 0.2146 0.2169 6.07% Amr::init() 1 0.2105 0.2107 0.2107 5.90% AmrLevel::FillPatch() 41 0.1806 0.1972 0.2033 5.69% Castro::construct_old_gravity() 10 0.1799 0.1862 0.1966 5.50% Amr::initialInit() 1 0.1948 0.1955 0.196 5.48% Gravity::get_old_grav_vector() 10 0.1791 0.1855 0.1957 5.47% Castro::construct_new_gravity() 10 0.1877 0.1893 0.1919 5.37% FillPatchIterator::Initialize 41 0.152 0.1668 0.1791 5.01% Castro::initialize_do_advance() 10 0.1553 0.1642 0.1697 4.75% check_for_negative_density() 10 0.01684 0.08949 0.1663 4.65% Amr::InitializeInit() 1 0.07216 0.117 0.1662 4.65% Amr::defBaseLevel() 1 0.07215 0.117 0.1662 4.65% Castro::initData() 1 0.05294 0.0978 0.147 4.11% FillPatchIterator::FillFromLevel0() 41 0.1147 0.1259 0.1436 4.02% FillPatchSingleLevel 41 0.1146 0.1258 0.1435 4.02% Castro::estTimeStep() 21 0.02348 0.08089 0.1281 3.58% Castro::clean_state() 62 0.1141 0.1209 0.1247 3.49% Amr::FinalizeInit() 1 0.02947 0.0785 0.1237 3.46% Castro::expand_state() 10 0.09998 0.1112 0.1169 3.27% FabArray::ParallelCopy() 41 0.08399 0.09322 0.1137 3.18% Castro::computeInitialDt() 2 0.002481 0.05164 0.09653 2.70% Castro::do_old_sources() 10 0.08835 0.09212 0.09569 2.68% amrex::Copy() 193 0.06224 0.07543 0.08089 2.26% FabArray::setVal() 143 0.06497 0.07077 0.08053 2.25% Castro::initialize_advance() 10 0.06234 0.07201 0.07982 2.23% FabArray::ParallelCopy_finish() 41 0.04527 0.05366 0.07957 2.23% Castro::computeTemp() 63 0.06697 0.06948 0.07233 2.02% Castro::do_new_sources() 10 0.05505 0.0648 0.07223 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04686 0.04908 0.0513 1.44% Castro::reset_internal_energy(Fab) 1008 0.04657 0.04879 0.051 1.43% Castro::normalize_species() 62 0.042 0.04622 0.0493 1.38% FabArray::ParallelCopy_nowait() 41 0.03402 0.03947 0.04111 1.15% StateDataPhysBCFunct::() 41 0.02978 0.03252 0.03599 1.01% StateData::FillBoundary(geom) 41 0.02969 0.03243 0.03588 1.00% Castro::construct_new_source() 50 0.02695 0.03038 0.03339 0.93% Gravity::interpolate_monopole_grav() 21 0.02773 0.02928 0.03094 0.87% Castro::finalize_do_advance() 10 0.01299 0.02106 0.03092 0.87% Castro::construct_new_gravity_source() 10 0.02146 0.02439 0.02727 0.76% Castro::post_init() 1 0.02606 0.02636 0.02701 0.76% Amr::writePlotFile() 2 0.02235 0.02281 0.02341 0.66% Castro::post_timestep() 10 0.0158 0.01665 0.01723 0.48% VisMF::Write(FabArray) 2 0.009054 0.009803 0.01353 0.38% Castro::Castro() 1 0.01255 0.01272 0.01294 0.36% Castro::apply_source_to_state() 20 0.0101 0.0118 0.01244 0.35% FabArray::Saxpy() 20 0.01006 0.01175 0.01238 0.35% Castro::check_for_nan() 20 0.009482 0.01036 0.01149 0.32% MultiFab::contains_nan() 20 0.00946 0.01033 0.01147 0.32% FabArray::setDomainBndry() 41 0.006999 0.008985 0.01026 0.29% Castro::construct_old_source() 50 0.006662 0.009013 0.009579 0.27% Castro::construct_old_gravity_source() 10 0.006614 0.008943 0.009503 0.27% Castro::computeNewDt() 9 0.009239 0.009249 0.009262 0.26% Castro::initMFs() 1 0.007553 0.007614 0.007746 0.22% Other 261 0.02699 0.03103 0.03462 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-16-g1f038e767011) finalized