Initializing AMReX (24.06-16-g1f038e767011)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-16-g1f038e767011) initialized Starting run at 05:19:46 UTC on 2024-06-20. Successfully read inputs file ... Castro git describe: 24.06-14-g5f48f9561 AMReX git describe: 24.06-16-g1f038e767 Microphysics git describe: 24.06-10-g30469dd4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.070354694 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362638637 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366548282 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334903218 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.371959236 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336890539 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315673273 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315478025 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.320879509 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.340335517 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.329285087 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009066128 seconds Ending run at 05:19:49 UTC on 2024-06-20. Run time = 3.671599011 Run time without initialization = 3.409361507 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.67 ... 3.671 ... 3.672 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3517 2.4161 2.4810 67.57% Gravity::make_radial_gravity() 21 0.2906 0.3022 0.3133 8.53% check_for_negative_density() 10 0.02884 0.09828 0.1648 4.49% Castro::initData() 1 0.04719 0.09177 0.1415 3.85% Castro::estTimeStep() 21 0.03518 0.08398 0.134 3.65% amrex::Copy() 193 0.07017 0.07597 0.08374 2.28% Castro::normalize_species() 62 0.04363 0.05522 0.07811 2.13% FabArray::setVal() 143 0.06534 0.07166 0.07714 2.10% Amr::writePlotFile() 2 0.0632 0.06643 0.06739 1.84% FabArray::ParallelCopy_finish() 41 0.04385 0.05238 0.06625 1.80% Castro::reset_internal_energy(Fab) 1008 0.04376 0.04694 0.04993 1.36% FabArray::ParallelCopy_nowait() 41 0.03617 0.03974 0.04159 1.13% StateData::FillBoundary(geom) 41 0.03021 0.03264 0.03504 0.95% FillPatchIterator::Initialize 41 0.02827 0.03122 0.03324 0.91% Gravity::interpolate_monopole_grav() 21 0.02729 0.02893 0.0299 0.81% Castro::construct_new_gravity_source() 10 0.02327 0.02485 0.027 0.74% Castro::computeTemp() 63 0.01815 0.01942 0.0207 0.56% Castro::initialize_do_advance() 10 0.01388 0.01696 0.01894 0.52% Castro::initialize_advance() 10 0.01045 0.01201 0.01373 0.37% VisMF::Write(FabArray) 2 0.009116 0.01001 0.01363 0.37% FabArray::Saxpy() 20 0.01111 0.01197 0.0128 0.35% FabArray::setDomainBndry() 41 0.00713 0.009316 0.01182 0.32% MultiFab::contains_nan() 20 0.009588 0.01061 0.01149 0.31% Amr::coarseTimeStep() 10 0.002211 0.007826 0.01105 0.30% Castro::construct_old_gravity_source() 10 0.006646 0.00917 0.00976 0.27% Castro::initMFs() 1 0.0065 0.007081 0.007683 0.21% Castro::construct_new_source() 50 0.005882 0.006088 0.006225 0.17% main() 1 0.003643 0.004181 0.004817 0.13% Gravity::get_new_grav_vector() 11 0.002885 0.003304 0.00418 0.11% Gravity::get_old_grav_vector() 10 0.001587 0.001973 0.002354 0.06% Castro::finalize_do_advance() 10 0.0004718 0.001011 0.001124 0.03% AmrLevel::FillPatch() 41 0.0006994 0.0008788 0.0009886 0.03% Amr::timeStep() 10 0.0001551 0.0002181 0.0004104 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0003019 0.0003367 0.01% Castro::clean_state() 62 0.0001494 0.0001679 0.0001925 0.01% Castro::do_advance_ctu() 10 0.0001458 0.0001585 0.000172 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001053 0.0001183 0.0001438 0.00% Amr::FinalizeInit() 1 3.187e-06 1.823e-05 0.0001172 0.00% FabArray::ParallelCopy() 41 7.769e-05 8.821e-05 0.0001073 0.00% StateDataPhysBCFunct::() 41 9.479e-05 9.911e-05 0.0001039 0.00% Castro::do_old_sources() 10 7.824e-05 9.104e-05 0.0001034 0.00% Castro::Castro() 1 7.348e-05 8.047e-05 8.852e-05 0.00% FillPatchSingleLevel 41 7.291e-05 7.739e-05 8.704e-05 0.00% Castro::construct_old_source() 50 5.54e-05 7.235e-05 8.39e-05 0.00% Castro::do_new_sources() 10 5.314e-05 6.031e-05 6.682e-05 0.00% Amr::defBaseLevel() 1 3.844e-05 5.378e-05 6.458e-05 0.00% Castro::subcycle_advance_ctu() 10 4.654e-05 5.199e-05 6.27e-05 0.00% Castro::advance() 10 4.265e-05 4.732e-05 5.965e-05 0.00% Castro::construct_new_gravity() 10 3.11e-05 3.629e-05 5.18e-05 0.00% Castro::apply_source_to_state() 20 3.759e-05 4.421e-05 5.013e-05 0.00% Castro::construct_old_gravity() 10 3.21e-05 3.752e-05 4.997e-05 0.00% Castro::post_timestep() 10 1.402e-05 1.936e-05 3.244e-05 0.00% Castro::check_for_nan() 20 2.152e-05 2.487e-05 2.946e-05 0.00% Castro::expand_state() 10 2.195e-05 2.435e-05 2.715e-05 0.00% Castro::computeNewDt() 9 8.286e-06 1.132e-05 1.817e-05 0.00% Castro::post_init() 1 8.686e-06 1.002e-05 1.325e-05 0.00% Amr::InitializeInit() 1 2.735e-06 7.978e-06 1.057e-05 0.00% Amr::initialInit() 1 1.656e-06 2.924e-06 9.525e-06 0.00% Castro::computeInitialDt() 2 3.225e-06 3.616e-06 4.657e-06 0.00% Amr::init() 1 1.791e-06 2.795e-06 3.392e-06 0.00% Other 261 0.01618 0.01898 0.0206 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.67 3.671 3.672 100.00% Amr::coarseTimeStep() 10 3.396 3.396 3.396 92.48% Amr::timeStep() 10 3.374 3.377 3.383 92.13% Castro::advance() 10 3.358 3.358 3.359 91.47% Castro::subcycle_advance_ctu() 10 3.272 3.278 3.283 89.41% Castro::do_advance_ctu() 10 3.272 3.278 3.283 89.41% Castro::construct_ctu_hydro_source() 10 2.533 2.538 2.541 69.20% Gravity::make_radial_gravity() 21 0.3049 0.3171 0.3282 8.94% Amr::init() 1 0.2611 0.2615 0.2616 7.13% Gravity::get_new_grav_vector() 11 0.2085 0.2113 0.213 5.80% AmrLevel::FillPatch() 41 0.1844 0.1962 0.207 5.64% Castro::construct_old_gravity() 10 0.1822 0.1887 0.1961 5.34% Gravity::get_old_grav_vector() 10 0.1815 0.1881 0.1954 5.32% Amr::initialInit() 1 0.1906 0.191 0.1912 5.21% Castro::construct_new_gravity() 10 0.1856 0.1882 0.1899 5.17% FillPatchIterator::Initialize 41 0.1573 0.1658 0.1748 4.76% Castro::initialize_do_advance() 10 0.1535 0.1636 0.1719 4.68% check_for_negative_density() 10 0.02884 0.09828 0.1648 4.49% Amr::InitializeInit() 1 0.06817 0.1133 0.1638 4.46% Amr::defBaseLevel() 1 0.06816 0.1133 0.1638 4.46% Castro::clean_state() 62 0.115 0.1271 0.1507 4.10% Castro::initData() 1 0.05101 0.0959 0.1452 3.95% FillPatchIterator::FillFromLevel0() 41 0.1185 0.1252 0.1354 3.69% FillPatchSingleLevel 41 0.1184 0.1251 0.1352 3.68% Castro::estTimeStep() 21 0.03518 0.08398 0.134 3.65% Amr::FinalizeInit() 1 0.02743 0.07771 0.1227 3.34% Castro::expand_state() 10 0.1037 0.111 0.12 3.27% FabArray::ParallelCopy() 41 0.08551 0.0923 0.1026 2.79% Castro::do_old_sources() 10 0.08783 0.09367 0.09791 2.67% Castro::computeInitialDt() 2 0.002326 0.05271 0.09779 2.66% amrex::Copy() 193 0.07017 0.07597 0.08374 2.28% Castro::initialize_advance() 10 0.07174 0.07662 0.08182 2.23% Amr::writePlotFile() 2 0.07957 0.07967 0.07986 2.18% Castro::normalize_species() 62 0.04363 0.05522 0.07811 2.13% FabArray::setVal() 143 0.06534 0.07166 0.07714 2.10% Castro::do_new_sources() 10 0.06307 0.06729 0.07181 1.96% Castro::computeTemp() 63 0.06219 0.06667 0.07036 1.92% FabArray::ParallelCopy_finish() 41 0.04385 0.05238 0.06625 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04404 0.04724 0.05025 1.37% Castro::reset_internal_energy(Fab) 1008 0.04376 0.04694 0.04993 1.36% FabArray::ParallelCopy_nowait() 41 0.03626 0.03983 0.04169 1.14% StateDataPhysBCFunct::() 41 0.03031 0.03274 0.03515 0.96% StateData::FillBoundary(geom) 41 0.03021 0.03264 0.03504 0.95% Castro::construct_new_source() 50 0.02944 0.03094 0.03296 0.90% Gravity::interpolate_monopole_grav() 21 0.02729 0.02893 0.0299 0.81% Castro::finalize_do_advance() 10 0.01789 0.02281 0.02778 0.76% Castro::construct_new_gravity_source() 10 0.02327 0.02485 0.027 0.74% Castro::post_init() 1 0.02382 0.02424 0.02466 0.67% Castro::post_timestep() 10 0.01538 0.01872 0.02462 0.67% VisMF::Write(FabArray) 2 0.009116 0.01001 0.01363 0.37% Castro::apply_source_to_state() 20 0.01115 0.01202 0.01285 0.35% FabArray::Saxpy() 20 0.01111 0.01197 0.0128 0.35% Castro::Castro() 1 0.0096 0.01097 0.0119 0.32% FabArray::setDomainBndry() 41 0.00713 0.009316 0.01182 0.32% Castro::check_for_nan() 20 0.00961 0.01063 0.01152 0.31% MultiFab::contains_nan() 20 0.009588 0.01061 0.01149 0.31% Castro::construct_old_source() 50 0.006701 0.009242 0.009834 0.27% Castro::construct_old_gravity_source() 10 0.006646 0.00917 0.00976 0.27% Castro::computeNewDt() 9 0.009462 0.009488 0.009512 0.26% Castro::initMFs() 1 0.0065 0.007081 0.007683 0.21% Other 261 0.02627 0.03091 0.03413 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 40 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-16-g1f038e767011) finalized