Initializing AMReX (24.06-21-g259db7cfb99e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-21-g259db7cfb99e) initialized Starting run at 05:31:21 UTC on 2024-06-21. Successfully read inputs file ... Castro git describe: 24.06-14-g5f48f9561 AMReX git describe: 24.06-21-g259db7cfb Microphysics git describe: 24.06-10-g30469dd4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015995185 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.3563492 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354309664 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330069816 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329377787 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36677973 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.314778944 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310754325 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310696507 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310144173 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31155358 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.024157615 seconds Ending run at 05:31:25 UTC on 2024-06-21. Run time = 3.51557236 Run time without initialization = 3.323829978 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.515 ... 3.515 ... 3.516 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2621 2.3707 2.4123 68.62% Gravity::make_radial_gravity() 21 0.2873 0.3072 0.3269 9.30% check_for_negative_density() 10 0.02106 0.06678 0.179 5.09% Castro::initData() 1 0.04809 0.08996 0.1242 3.53% Castro::estTimeStep() 21 0.02307 0.06109 0.1065 3.03% amrex::Copy() 193 0.06496 0.08174 0.1009 2.87% FabArray::ParallelCopy_finish() 41 0.04384 0.05322 0.08338 2.37% FabArray::setVal() 143 0.0573 0.0661 0.07375 2.10% Castro::reset_internal_energy(Fab) 1008 0.0456 0.04781 0.05269 1.50% Castro::normalize_species() 62 0.04114 0.04202 0.04313 1.23% FabArray::ParallelCopy_nowait() 41 0.03544 0.03977 0.04154 1.18% StateData::FillBoundary(geom) 41 0.03003 0.03272 0.03677 1.05% FillPatchIterator::Initialize 41 0.02776 0.0317 0.03414 0.97% Gravity::interpolate_monopole_grav() 21 0.02746 0.029 0.02997 0.85% Amr::writePlotFile() 2 0.02534 0.02765 0.02855 0.81% Castro::construct_new_gravity_source() 10 0.02163 0.02296 0.02396 0.68% Castro::computeTemp() 63 0.01948 0.0199 0.02034 0.58% Castro::initialize_do_advance() 10 0.01193 0.01617 0.01802 0.51% MultiFab::contains_nan() 20 0.009662 0.01098 0.01348 0.38% Castro::initialize_advance() 10 0.005315 0.0104 0.01319 0.38% VisMF::Write(FabArray) 2 0.009092 0.009761 0.01308 0.37% FabArray::Saxpy() 20 0.01088 0.01199 0.01294 0.37% FabArray::setDomainBndry() 41 0.006866 0.008862 0.01006 0.29% Castro::construct_old_gravity_source() 10 0.006326 0.008542 0.009245 0.26% Castro::enforce_min_density() 62 0.007084 0.007379 0.007598 0.22% Castro::construct_new_source() 50 0.005694 0.00627 0.006644 0.19% main() 1 0.003466 0.00378 0.004024 0.11% Gravity::get_new_grav_vector() 11 0.002812 0.003486 0.003912 0.11% Gravity::get_old_grav_vector() 10 0.00146 0.002062 0.002704 0.08% Amr::coarseTimeStep() 10 0.001134 0.001741 0.002242 0.06% Castro::finalize_do_advance() 10 0.000468 0.001004 0.001446 0.04% AmrLevel::FillPatch() 41 0.0007064 0.0008452 0.0009278 0.03% Amr::timeStep() 10 0.0001623 0.0002105 0.0003482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002948 0.0003055 0.0003482 0.01% Castro::clean_state() 62 0.0001401 0.0001692 0.0001913 0.01% Castro::do_advance_ctu() 10 0.0001382 0.0001614 0.0001774 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001088 0.0001151 0.0001388 0.00% StateDataPhysBCFunct::() 41 8.724e-05 0.000104 0.0001214 0.00% FabArray::ParallelCopy() 41 8.494e-05 9.552e-05 0.0001064 0.00% Castro::Castro() 1 7.513e-05 8.85e-05 0.0001006 0.00% Castro::do_old_sources() 10 7.104e-05 8.629e-05 9.554e-05 0.00% Amr::FinalizeInit() 1 3.619e-06 1.486e-05 8.933e-05 0.00% Castro::construct_old_source() 50 5.535e-05 7.148e-05 8.401e-05 0.00% FillPatchSingleLevel 41 6.74e-05 7.187e-05 7.982e-05 0.00% Castro::do_new_sources() 10 5.486e-05 6.469e-05 7.254e-05 0.00% Castro::subcycle_advance_ctu() 10 4.12e-05 4.922e-05 5.896e-05 0.00% Castro::construct_old_gravity() 10 3.118e-05 4.319e-05 5.449e-05 0.00% Castro::advance() 10 3.461e-05 4.498e-05 5.382e-05 0.00% Castro::apply_source_to_state() 20 4.011e-05 4.374e-05 4.641e-05 0.00% Castro::construct_new_gravity() 10 3.171e-05 3.517e-05 4.528e-05 0.00% Amr::defBaseLevel() 1 3.191e-05 3.571e-05 4.348e-05 0.00% Castro::expand_state() 10 2.134e-05 2.721e-05 3.57e-05 0.00% Castro::check_for_nan() 20 2.256e-05 2.7e-05 3.282e-05 0.00% Castro::post_timestep() 10 1.479e-05 1.893e-05 3.015e-05 0.00% Castro::post_init() 1 8.697e-06 1.005e-05 1.148e-05 0.00% Castro::computeNewDt() 9 7.009e-06 8.39e-06 1.131e-05 0.00% Amr::initialInit() 1 1.189e-06 2.54e-06 8.842e-06 0.00% Amr::init() 1 1.687e-06 2.796e-06 7.488e-06 0.00% Amr::InitializeInit() 1 2.843e-06 3.647e-06 6.753e-06 0.00% Castro::computeInitialDt() 2 3.309e-06 4.025e-06 5.913e-06 0.00% Other 200 0.01631 0.01998 0.02169 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.515 3.515 3.516 100.00% Amr::coarseTimeStep() 10 3.296 3.296 3.296 93.74% Amr::timeStep() 10 3.283 3.284 3.284 93.42% Castro::advance() 10 3.267 3.267 3.268 92.95% Castro::subcycle_advance_ctu() 10 3.191 3.196 3.209 91.28% Castro::do_advance_ctu() 10 3.191 3.196 3.209 91.28% Castro::construct_ctu_hydro_source() 10 2.454 2.458 2.461 70.01% Gravity::make_radial_gravity() 21 0.303 0.3227 0.34 9.67% Castro::construct_old_gravity() 10 0.1847 0.2009 0.2159 6.14% Gravity::get_old_grav_vector() 10 0.1833 0.2001 0.2153 6.12% AmrLevel::FillPatch() 41 0.1809 0.2015 0.2143 6.09% Gravity::get_new_grav_vector() 11 0.2037 0.2057 0.2078 5.91% Amr::init() 1 0.191 0.1912 0.1912 5.44% FillPatchIterator::Initialize 41 0.1509 0.1668 0.184 5.23% Castro::construct_new_gravity() 10 0.1796 0.1803 0.1816 5.16% Castro::initialize_do_advance() 10 0.154 0.1661 0.1795 5.11% check_for_negative_density() 10 0.02106 0.06678 0.179 5.09% Amr::initialInit() 1 0.1748 0.1754 0.176 5.01% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1262 0.1493 4.25% FillPatchSingleLevel 41 0.1148 0.1261 0.1492 4.24% Amr::InitializeInit() 1 0.0667 0.1113 0.1462 4.16% Amr::defBaseLevel() 1 0.06669 0.1113 0.1462 4.16% Castro::initData() 1 0.05144 0.09377 0.128 3.64% Castro::expand_state() 10 0.1008 0.112 0.1247 3.55% Castro::clean_state() 62 0.1131 0.1167 0.1222 3.48% FabArray::ParallelCopy() 41 0.08302 0.09318 0.119 3.39% Amr::FinalizeInit() 1 0.02879 0.06407 0.1092 3.11% Castro::estTimeStep() 21 0.02307 0.06109 0.1065 3.03% amrex::Copy() 193 0.06496 0.08174 0.1009 2.87% Castro::do_old_sources() 10 0.09123 0.09672 0.09955 2.83% FabArray::ParallelCopy_finish() 41 0.04384 0.05322 0.08338 2.37% Castro::computeInitialDt() 2 0.002405 0.03726 0.08195 2.33% FabArray::setVal() 143 0.0573 0.0661 0.07375 2.10% Castro::initialize_advance() 10 0.05456 0.06769 0.07311 2.08% Castro::computeTemp() 63 0.06545 0.06801 0.07294 2.07% Castro::do_new_sources() 10 0.05614 0.06171 0.06538 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04589 0.04811 0.05304 1.51% Castro::reset_internal_energy(Fab) 1008 0.0456 0.04781 0.05269 1.50% Castro::normalize_species() 62 0.04114 0.04202 0.04313 1.23% FabArray::ParallelCopy_nowait() 41 0.03554 0.03987 0.04164 1.18% Amr::writePlotFile() 2 0.03947 0.04001 0.04045 1.15% StateDataPhysBCFunct::() 41 0.03012 0.03282 0.03688 1.05% StateData::FillBoundary(geom) 41 0.03003 0.03272 0.03677 1.05% Castro::construct_new_source() 50 0.02733 0.02923 0.03039 0.86% Gravity::interpolate_monopole_grav() 21 0.02746 0.029 0.02997 0.85% Castro::post_init() 1 0.0253 0.0264 0.027 0.77% Castro::construct_new_gravity_source() 10 0.02163 0.02296 0.02396 0.68% Castro::finalize_do_advance() 10 0.01154 0.01578 0.02185 0.62% Castro::post_timestep() 10 0.01557 0.01604 0.01634 0.46% Castro::check_for_nan() 20 0.009686 0.011 0.01351 0.38% MultiFab::contains_nan() 20 0.009662 0.01098 0.01348 0.38% VisMF::Write(FabArray) 2 0.009092 0.009761 0.01308 0.37% Castro::apply_source_to_state() 20 0.01092 0.01203 0.01299 0.37% FabArray::Saxpy() 20 0.01088 0.01199 0.01294 0.37% Castro::Castro() 1 0.009496 0.01124 0.01185 0.34% FabArray::setDomainBndry() 41 0.006866 0.008862 0.01006 0.29% Castro::construct_old_source() 50 0.006381 0.008613 0.009322 0.27% Castro::construct_old_gravity_source() 10 0.006326 0.008542 0.009245 0.26% Castro::computeNewDt() 9 0.009057 0.009067 0.009081 0.26% Castro::enforce_min_density() 62 0.007084 0.007379 0.007598 0.22% Other 200 0.02645 0.03119 0.03404 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-21-g259db7cfb99e) finalized