Initializing AMReX (24.06-21-g259db7cfb99e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-21-g259db7cfb99e) initialized Starting run at 05:24:10 UTC on 2024-06-24. Successfully read inputs file ... Castro git describe: 24.06-16-g830d937a6 AMReX git describe: 24.06-21-g259db7cfb Microphysics git describe: 24.06-31-g48149cdd reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014009734 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.34774572 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336409181 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.351956934 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333957297 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.386921581 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.323762716 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316825831 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315979203 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316495271 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31826441 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007912998 seconds Ending run at 05:24:14 UTC on 2024-06-24. Run time = 3.553500594 Run time without initialization = 3.360648508 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.554 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3364 2.3907 2.4683 69.46% Gravity::make_radial_gravity() 21 0.2915 0.3007 0.32 9.00% check_for_negative_density() 10 0.02023 0.1018 0.1601 4.50% Castro::initData() 1 0.04877 0.08727 0.1302 3.66% Castro::estTimeStep() 21 0.02732 0.07389 0.1185 3.33% FabArray::ParallelCopy_finish() 41 0.04499 0.05412 0.09298 2.62% amrex::Copy() 193 0.06011 0.07871 0.08444 2.38% FabArray::setVal() 143 0.05322 0.0653 0.07154 2.01% Castro::reset_internal_energy(Fab) 1008 0.0433 0.04652 0.04952 1.39% Castro::normalize_species() 62 0.0416 0.04478 0.04772 1.34% FabArray::ParallelCopy_nowait() 41 0.03566 0.03987 0.04144 1.17% StateData::FillBoundary(geom) 41 0.02914 0.03179 0.03463 0.97% FillPatchIterator::Initialize 41 0.02637 0.03124 0.03353 0.94% Gravity::interpolate_monopole_grav() 21 0.02718 0.02914 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02265 0.02369 0.02591 0.73% Castro::computeTemp() 63 0.01835 0.01982 0.02069 0.58% MultiFab::contains_nan() 20 0.009191 0.01112 0.01853 0.52% Castro::initialize_do_advance() 10 0.01117 0.01569 0.01735 0.49% Castro::initialize_advance() 10 0.005196 0.01043 0.01303 0.37% FabArray::Saxpy() 20 0.01027 0.012 0.01295 0.36% VisMF::Write(FabArray) 2 0.009037 0.009579 0.01277 0.36% FabArray::setDomainBndry() 41 0.006954 0.009194 0.01153 0.32% Amr::writePlotFile() 2 0.007635 0.009586 0.009987 0.28% Castro::construct_old_gravity_source() 10 0.006762 0.008912 0.009442 0.27% Castro::initMFs() 1 0.006431 0.006971 0.008105 0.23% Castro::construct_new_source() 50 0.005592 0.00642 0.006739 0.19% main() 1 0.003549 0.003685 0.003791 0.11% Gravity::get_new_grav_vector() 11 0.002674 0.003187 0.003464 0.10% Amr::coarseTimeStep() 10 0.001245 0.001951 0.002444 0.07% Gravity::get_old_grav_vector() 10 0.001419 0.00207 0.002432 0.07% Castro::finalize_do_advance() 10 0.0003868 0.0009719 0.001113 0.03% AmrLevel::FillPatch() 41 0.0006268 0.0008929 0.0009961 0.03% Amr::timeStep() 10 0.0001596 0.0002159 0.0003684 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002889 0.0003034 0.0003164 0.01% Castro::do_advance_ctu() 10 0.0001387 0.0001718 0.0002298 0.01% Castro::clean_state() 62 0.0001455 0.0001614 0.0001781 0.01% StateDataPhysBCFunct::() 41 9.805e-05 0.0001059 0.0001271 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001071 0.0001136 0.0001203 0.00% FabArray::ParallelCopy() 41 8.142e-05 8.977e-05 0.0001048 0.00% Castro::do_old_sources() 10 6.941e-05 8.707e-05 0.0001001 0.00% Castro::Castro() 1 7.395e-05 8.559e-05 9.483e-05 0.00% Amr::FinalizeInit() 1 3.575e-06 1.529e-05 8.785e-05 0.00% Castro::construct_old_source() 50 6.126e-05 7.281e-05 8.395e-05 0.00% Castro::construct_old_gravity() 10 3.088e-05 4.233e-05 8.126e-05 0.00% FillPatchSingleLevel 41 6.582e-05 7.324e-05 8.052e-05 0.00% Castro::do_new_sources() 10 5.348e-05 6.02e-05 6.423e-05 0.00% Castro::check_for_nan() 20 2.035e-05 2.816e-05 6.137e-05 0.00% Castro::subcycle_advance_ctu() 10 4.096e-05 4.945e-05 5.78e-05 0.00% Castro::advance() 10 3.283e-05 4.472e-05 5.119e-05 0.00% Castro::apply_source_to_state() 20 3.774e-05 4.217e-05 5.076e-05 0.00% Amr::defBaseLevel() 1 2.833e-05 3.347e-05 3.978e-05 0.00% Castro::construct_new_gravity() 10 2.793e-05 3.314e-05 3.703e-05 0.00% Castro::expand_state() 10 2.355e-05 2.492e-05 2.705e-05 0.00% Castro::post_timestep() 10 1.553e-05 1.826e-05 2.548e-05 0.00% Castro::post_init() 1 7.876e-06 9.27e-06 1.378e-05 0.00% Castro::computeNewDt() 9 6.861e-06 7.814e-06 9.747e-06 0.00% Castro::computeInitialDt() 2 2.998e-06 3.693e-06 5.136e-06 0.00% Amr::InitializeInit() 1 2.885e-06 3.585e-06 5.123e-06 0.00% Amr::init() 1 1.765e-06 2.131e-06 2.55e-06 0.00% Amr::initialInit() 1 1.309e-06 1.775e-06 2.237e-06 0.00% Other 261 0.01634 0.01955 0.02104 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.553 3.553 3.554 100.00% Amr::coarseTimeStep() 10 3.349 3.349 3.349 94.24% Amr::timeStep() 10 3.336 3.337 3.337 93.91% Castro::advance() 10 3.319 3.32 3.32 93.44% Castro::subcycle_advance_ctu() 10 3.243 3.248 3.263 91.83% Castro::do_advance_ctu() 10 3.243 3.248 3.263 91.83% Castro::construct_ctu_hydro_source() 10 2.51 2.514 2.517 70.84% Gravity::make_radial_gravity() 21 0.3071 0.3167 0.3332 9.38% AmrLevel::FillPatch() 41 0.1863 0.1988 0.2145 6.04% Castro::construct_old_gravity() 10 0.1876 0.1941 0.2076 5.84% Gravity::get_old_grav_vector() 10 0.1868 0.1934 0.207 5.83% Gravity::get_new_grav_vector() 11 0.2045 0.2056 0.2065 5.81% Amr::init() 1 0.1921 0.1923 0.1923 5.41% FillPatchIterator::Initialize 41 0.1559 0.1667 0.1916 5.39% Castro::construct_new_gravity() 10 0.1827 0.1835 0.1843 5.19% Amr::initialInit() 1 0.1779 0.1785 0.1786 5.03% Castro::initialize_do_advance() 10 0.1569 0.1606 0.1637 4.61% check_for_negative_density() 10 0.02023 0.1018 0.1601 4.50% FillPatchIterator::FillFromLevel0() 41 0.1188 0.1263 0.1582 4.45% FillPatchSingleLevel 41 0.1187 0.1261 0.1581 4.45% Amr::InitializeInit() 1 0.06902 0.1079 0.152 4.28% Amr::defBaseLevel() 1 0.06901 0.1079 0.152 4.28% Castro::initData() 1 0.05296 0.09108 0.1339 3.77% FabArray::ParallelCopy() 41 0.08625 0.09417 0.1288 3.62% Castro::clean_state() 62 0.1157 0.118 0.1215 3.42% Castro::estTimeStep() 21 0.02732 0.07389 0.1185 3.33% Castro::expand_state() 10 0.1016 0.108 0.1158 3.26% Amr::FinalizeInit() 1 0.02653 0.07061 0.1089 3.06% Castro::do_old_sources() 10 0.09296 0.09752 0.1006 2.83% FabArray::ParallelCopy_finish() 41 0.04499 0.05412 0.09298 2.62% Castro::computeInitialDt() 2 0.003055 0.04715 0.0859 2.42% amrex::Copy() 193 0.06011 0.07871 0.08444 2.38% Castro::initialize_advance() 10 0.05287 0.06847 0.07371 2.07% FabArray::setVal() 143 0.05322 0.0653 0.07154 2.01% Castro::computeTemp() 63 0.06194 0.06664 0.07049 1.98% Castro::do_new_sources() 10 0.05842 0.06342 0.06902 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04359 0.04682 0.04984 1.40% Castro::reset_internal_energy(Fab) 1008 0.0433 0.04652 0.04952 1.39% Castro::normalize_species() 62 0.0416 0.04478 0.04772 1.34% FabArray::ParallelCopy_nowait() 41 0.03575 0.03996 0.04153 1.17% StateDataPhysBCFunct::() 41 0.02924 0.03189 0.03475 0.98% StateData::FillBoundary(geom) 41 0.02914 0.03179 0.03463 0.97% Castro::construct_new_source() 50 0.02824 0.03011 0.03259 0.92% Gravity::interpolate_monopole_grav() 21 0.02718 0.02914 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02265 0.02369 0.02591 0.73% Castro::finalize_do_advance() 10 0.01233 0.0185 0.02377 0.67% Castro::post_init() 1 0.02256 0.0232 0.0234 0.66% Amr::writePlotFile() 2 0.02165 0.02175 0.0222 0.62% Castro::check_for_nan() 20 0.009215 0.01115 0.01859 0.52% MultiFab::contains_nan() 20 0.009191 0.01112 0.01853 0.52% Castro::post_timestep() 10 0.01595 0.0163 0.01671 0.47% Castro::apply_source_to_state() 20 0.01031 0.01204 0.013 0.37% FabArray::Saxpy() 20 0.01027 0.012 0.01295 0.36% VisMF::Write(FabArray) 2 0.009037 0.009579 0.01277 0.36% Castro::Castro() 1 0.009887 0.01083 0.0119 0.33% FabArray::setDomainBndry() 41 0.006954 0.009194 0.01153 0.32% Castro::construct_old_source() 50 0.006824 0.008984 0.009513 0.27% Castro::construct_old_gravity_source() 10 0.006762 0.008912 0.009442 0.27% Castro::computeNewDt() 9 0.009209 0.009219 0.009225 0.26% Castro::initMFs() 1 0.006431 0.006971 0.008105 0.23% Other 261 0.02637 0.0304 0.03268 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 39 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-21-g259db7cfb99e) finalized